Lsi07G004800.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G004800.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Lys-63-specific deubiquitinase BRCC36
Location	chr07 : 5047403 .. 5049403 (-)
Sequence length	519

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTCACTTATCAACGGAAGAATAGTGAGGGCATTTGGGCATTTGAGCATTTTGGTAAGTCTAAATATTATATAAATTAGAGAGCTTAATCCATACACACTTATAAATTTTTTTTAATAAAAGCTAACTTAAAGATTTTCATAAACTCATTTGATGAAAAGTTATTTTGAGTGATTACTAAATATTCCAATTTTTTTTAAAATGATTTTTTTTTAAAGATATTTTAAAAGTTAAACCAAATCTATCCTAAATTATTGGAGGTGATTATAATATTTTTTAGGGTTCTTTTCAAATATAGAAAAATAAGTCAAACTATTTACAAATATAGAAAAATTTTACAGTCTATCATGTCTATCATGATAGACTGCGATAGAATTTTATCGCTTCCTATCGCCCCAGCGATAGAATTATTTGCTTGAGCGATAGAATTCTATCGCTTTCTATCGCGGTCTATCACTGATAGATAGTAAAATTTTTCTATATTTGTAAATAGTTTTATATTTTTTCTGTTTATAGTAATTTTCCTATTTTTTTTAACCCCATAAAAATAGGGAAATTTTCACAAAGAGAAAAAATATAAAGTATTTATAGAAAATAGTAAAAAAAATATTAATAGACATGGATAGACTTCTATCACATTTATCAGTGATAAACTTCTTTCATTTCTAATAGACTTCTATTAGCATTTATCACAACTATATAAAATTTTACTATGTAAGTAGTTTCTTTTTTTTCTCTCTCTTTTTTTTTTAATTTCTCTTGAAAATACGATGAAAGAGCAACAATTTTTTTTTTAACAAGAATTTCTTTTGCTTTCCTTAAATGCAACCAAATAAAAAAATAATTAAAAAAGAGGTCGTGTCTAAATCGCATAGTCACGAATCAGATATCAACGGGTACGCACGACCGTACTGAATTGATACTCAGCCTTGCGATCCGCTGCACAAGGTCCTTCGAACACACCGGCCAGTGAGTCTGGGTTGAGAGTTGAAATTAAAGCTCGAAGATCCTTCCGAATCTCTCTCTCTCTCTCCTTTTGCCTTCATTCATTCTCTACAGAGAGAATCGAAGTTTCTGAAATTCAGAAAGAAAGCGGCGATCCAAAGATGTCTCTGACGGCCGTGAAGATGTCCGAAGATATCTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTCCTTGGCGATATTCAGGTCACTCTCTTTATTTCCACTCTCAGTCCATTTTGCATAATCTGCTGTCGATTTTGCTTTAATTTCGGTTACTGGGTGTGTATTTCTTGCCTTGGTTGCTTATTTGAAACAAAGGTTATATTGGTTTGTTTATTTTGGCAAATGGGGTTGTTTGTGCTTTGAATTCTCTTTATTTTAGAGTTAGAGGTAAGATTTTTGTGCTCCTCTGGCTCGGTTAATTGATTTCTTAGCTATTTTGTAAAATTCACAGTGAGGAGTGGTATTTGTGGTACTCTCTGCACAGTCTTCTGACTCCATATGATGTCTGTTAGGAATGGACTTGGTTTCTTTTTCACATTAGTGCGTGTGATTTTGTTACATTAATCACACAGTTCTAACACTTGTGTTCTACCTCTTGTTAGATGGTCTATCCGAATTATGGTTCATTCGTTAACACACGATAGAGATTTTGATTCTACAATTTCTTTCAAGAGTTCGAGTAATTTCTTTTTCATGGCTGATTCTCTAAGCTTTAAGCTATTTTCATCATTTTTCTTTCAGGGTGTTTTCCTTTTTAAAAGGTAGTTGTTATTTCGGTTCTGCGTTCTTCCTGACCATGAGATTTTGCAGCATTCAAAAAATGGTAGTGTAACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGGGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCTGCCCAGGCTGAGATATCCTTTGCTCCTTTTAGCTTTGGGAAATTCTTCTTCTTCTAG

mRNA sequence

ATGGTAGTCACTTATCAACGGAAGAATAGTGAGGGCATTTGGGCATTTGAGCATTTTGCCTTGCGATCCGCTGCACAAGGTCCTTCGAACACACCGGCCAGTGAGTCTGGGTTGAGAGTTGAAATTAAAGCTCGAAGATCCTTCCGAATCTCTCTCTCTCTCTCCTTTTGCCTTCATTCATTCTCTACAGAGAGAATCGAAGTTTCTGAAATTCAGAAAGAAAGCGGCGATCCAAAGATGTCTCTGACGGCCGTGAAGATGTCCGAAGATATCTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTCCTTGGCGATATTCAGCATTCAAAAAATGGTAGTGTAACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGGGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCTGCCCAGGCTGAGATATCCTTTGCTCCTTTTAGCTTTGGGAAATTCTTCTTCTTCTAG

Coding sequence (CDS)

ATGGTAGTCACTTATCAACGGAAGAATAGTGAGGGCATTTGGGCATTTGAGCATTTTGCCTTGCGATCCGCTGCACAAGGTCCTTCGAACACACCGGCCAGTGAGTCTGGGTTGAGAGTTGAAATTAAAGCTCGAAGATCCTTCCGAATCTCTCTCTCTCTCTCCTTTTGCCTTCATTCATTCTCTACAGAGAGAATCGAAGTTTCTGAAATTCAGAAAGAAAGCGGCGATCCAAAGATGTCTCTGACGGCCGTGAAGATGTCCGAAGATATCTGGTTTACTTGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATCATGGGGCTTCTCCTTGGCGATATTCAGCATTCAAAAAATGGTAGTGTAACTGCACTAATTTGGGGAGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGGGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCTGCCCAGGCTGAGATATCCTTTGCTCCTTTTAGCTTTGGGAAATTCTTCTTCTTCTAG

Protein sequence

MVVTYQRKNSEGIWAFEHFALRSAAQGPSNTPASESGLRVEIKARRSFRISLSLSFCLHSFSTERIEVSEIQKESGDPKMSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLAAASAQAEISFAPFSFGKFFFF

Homology

[Close]

BLAST of Lsi07G004800.1 vs. Swiss-Prot
Match: BRCC3_SALSA (Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           M+++AV +  D +  C+ HALSTE EE+MGL +G++  ++   + ++I       RSD+R
Sbjct: 1   MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVI----ILRRSDKR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVE  PEQL++A+ +AE
Sbjct: 61  KDRVEISPEQLSSAATEAE 75

[Close]

BLAST of Lsi07G004800.1 vs. Swiss-Prot
Match: BRCC3_XENTR (Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis GN=brcc3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           M++ AV +  D +  C+TH+LSTE EE+MGL +G++   K   + ++I       RSD+R
Sbjct: 1   MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKVVHIHSVI----ILRRSDKR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVE  PEQL+AA+ +A+
Sbjct: 61  KDRVEISPEQLSAATTEAD 75

[Close]

BLAST of Lsi07G004800.1 vs. Swiss-Prot
Match: BRCC3_XENLA (Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           M++ AV +  D +  C+TH+LSTE EE+MGL +G++   K   + ++I       RSD+R
Sbjct: 1   MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKLVHIHSVI----ILRRSDKR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVE  PEQL+AA+ +A+
Sbjct: 61  KDRVEISPEQLSAATIEAD 75

[Close]

BLAST of Lsi07G004800.1 vs. Swiss-Prot
Match: BRCC3_CALJA (Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus GN=BRCC3 PE=3 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 81  SLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQT------ 140
           ++ AV +  D +  CL HALSTE EE+MGL +G++             G   +T      
Sbjct: 8   AVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVD 67

Query: 141 --------------RSDRRKDRVETHPEQLAAASAQAE 159
                         RSD+RKDRVE  PEQL+AAS +AE
Sbjct: 68  AVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAE 105

[Close]

BLAST of Lsi07G004800.1 vs. Swiss-Prot
Match: BRCC3_HUMAN (Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 81  SLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQT------ 140
           ++ AV +  D +  CL HALSTE EE+MGL +G++             G   +T      
Sbjct: 8   AVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVD 67

Query: 141 --------------RSDRRKDRVETHPEQLAAASAQAE 159
                         RSD+RKDRVE  PEQL+AAS +AE
Sbjct: 68  AVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAE 105

[Close]

BLAST of Lsi07G004800.1 vs. TrEMBL
Match: A0A0A0KWR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004830 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-35
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVETHPEQLAAASAQAE
Sbjct: 61  KDRVETHPEQLAAASAQAE 79

[Close]

BLAST of Lsi07G004800.1 vs. TrEMBL
Match: F6HX94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06090 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.6e-34
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           MSLT VKMSED+W TC THALSTETEEIMGLLLGDI++SKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTCVKMSEDVWLTCTTHALSTETEEIMGLLLGDIEYSKNGSVTALIWGASPQTRSDRR 60

Query: 140 KDRVETHPEQLAAASAQAEISFAPFSF 167
           KDRVET+PEQLAAASAQAEISF  F F
Sbjct: 61  KDRVETNPEQLAAASAQAEISFICFLF 87

[Close]

BLAST of Lsi07G004800.1 vs. TrEMBL
Match: A0A078IZ76_BRANA (BnaA07g38320D protein OS=Brassica napus GN=BnaA07g38320D PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           M+LT V MSED+W TCLTHALSTETEEIMGLLLGDIQ+SKNGS TA+IWGASPQ+RSDR+
Sbjct: 1   MALTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIQYSKNGSATAMIWGASPQSRSDRQ 60

Query: 140 KDRVETHPEQLAAASAQAEISFAPFSFGKFFFF 173
           KDRVET+PEQLAAASAQAEISF  F+    F+F
Sbjct: 61  KDRVETNPEQLAAASAQAEISFLFFAIITIFYF 93

[Close]

BLAST of Lsi07G004800.1 vs. TrEMBL
Match: V4SII3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025661mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-32
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           MSLT VKMSED+W TCLTHALSTETEEIMGLLLGDI+HSKNG+VTALIWGASPQ+RSDRR
Sbjct: 1   MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVET+PEQLAAASAQA+
Sbjct: 61  KDRVETNPEQLAAASAQAD 79

[Close]

BLAST of Lsi07G004800.1 vs. TrEMBL
Match: A0A067ECR8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014126mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-32
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           MSLT VKMSED+W TCLTHALSTETEEIMGLLLGDI+HSKNG+VTALIWGASPQ+RSDRR
Sbjct: 1   MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVET+PEQLAAASAQA+
Sbjct: 61  KDRVETNPEQLAAASAQAD 79

[Close]

BLAST of Lsi07G004800.1 vs. TAIR10
Match: AT3G06820.2 (AT3G06820.2 Mov34/MPN/PAD-1 family protein)

HSP 1 Score: 134.0 bits (336), Expect = 8.6e-32
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNG-SVTALIWGASPQTRSDR 139
           MSLT V MSED+W TCLTHALSTETEEIMGLLLGDI++SKNG S TA+IWGASPQ RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKNGESATAMIWGASPQPRSDR 60

Query: 140 RKDRVETHPEQLAAASAQAE 159
           +KDRVET+PEQLAAASAQA+
Sbjct: 61  QKDRVETNPEQLAAASAQAD 80

[Close]

BLAST of Lsi07G004800.1 vs. TAIR10
Match: AT1G80210.1 (AT1G80210.1 Mov34/MPN/PAD-1 family protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-31
Identity = 66/80 (82.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKN-GSVTALIWGASPQTRSDR 139
           MSLT V MSED+W TCLTHALSTETEEIMGLLLGDI++SK+ GS TA+IWGASPQ+RSDR
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASPQSRSDR 60

Query: 140 RKDRVETHPEQLAAASAQAE 159
           +KDRVET+PEQLAAASAQA+
Sbjct: 61  QKDRVETNPEQLAAASAQAD 80

[Close]

BLAST of Lsi07G004800.1 vs. NCBI nr
Match: gi|449469008|ref|XP_004152213.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-35
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVETHPEQLAAASAQAE
Sbjct: 61  KDRVETHPEQLAAASAQAE 79

[Close]

BLAST of Lsi07G004800.1 vs. NCBI nr
Match: gi|659108552|ref|XP_008454260.1| (PREDICTED: COP9 signalosome complex subunit 5-like isoform X1 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-35
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           MSLTAVKMSED+WFTCLTHALSTETEEIMGLLLGDI+HSKNGSVTALIWGASPQTRSDRR
Sbjct: 1   MSLTAVKMSEDVWFTCLTHALSTETEEIMGLLLGDIEHSKNGSVTALIWGASPQTRSDRR 60

Query: 140 KDRVETHPEQLAAASAQAE 159
           KDRVETHPEQLAAASAQAE
Sbjct: 61  KDRVETHPEQLAAASAQAE 79

[Close]

BLAST of Lsi07G004800.1 vs. NCBI nr
Match: gi|1009174413|ref|XP_015868334.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 7.3e-33
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 1


Query: 37  GLRVEIKARRSFRISLSLSFCLHSFSTERIEVSEIQKESGDP-----KMSLTAVKMSEDI 96
           GLR EI+  R F    + +   HS  T+ ++      E+GD      +MSLT VKMSED+
Sbjct: 7   GLRSEIQ--RFFFFCFARAIRTHS--TKALQGMVWTLEAGDRERTRIRMSLTGVKMSEDV 66

Query: 97  WFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLA 156
           W TCLTHALSTETEEIMGLLLGDI++SKNGS TALIWGASPQTRSDRRKDRVET+PEQLA
Sbjct: 67  WLTCLTHALSTETEEIMGLLLGDIEYSKNGSATALIWGASPQTRSDRRKDRVETNPEQLA 126

Query: 157 AASAQAE 159
           AASAQAE
Sbjct: 127 AASAQAE 129

[Close]

BLAST of Lsi07G004800.1 vs. NCBI nr
Match: gi|1009180540|ref|XP_015871678.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36-like, partial [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 7.3e-33
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 1


Query: 37  GLRVEIKARRSFRISLSLSFCLHSFSTERIEVSEIQKESGDP-----KMSLTAVKMSEDI 96
           GLR EI+  R F    + +   HS  T+ ++      E+GD      +MSLT VKMSED+
Sbjct: 7   GLRSEIQ--RFFFFCFARAIRTHS--TKALQGMVWTLEAGDRERTRIRMSLTGVKMSEDV 66

Query: 97  WFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETHPEQLA 156
           W TCLTHALSTETEEIMGLLLGDI++SKNGS TALIWGASPQTRSDRRKDRVET+PEQLA
Sbjct: 67  WLTCLTHALSTETEEIMGLLLGDIEYSKNGSATALIWGASPQTRSDRRKDRVETNPEQLA 126

Query: 157 AASAQAE 159
           AASAQAE
Sbjct: 127 AASAQAE 129

[Close]

BLAST of Lsi07G004800.1 vs. NCBI nr
Match: gi|674875258|emb|CDY57692.1| (BnaA07g38320D [Brassica napus])

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 80  MSLTAVKMSEDIWFTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRR 139
           M+LT V MSED+W TCLTHALSTETEEIMGLLLGDIQ+SKNGS TA+IWGASPQ+RSDR+
Sbjct: 1   MALTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIQYSKNGSATAMIWGASPQSRSDRQ 60

Query: 140 KDRVETHPEQLAAASAQAEISFAPFSFGKFFFF 173
           KDRVET+PEQLAAASAQAEISF  F+    F+F
Sbjct: 61  KDRVETNPEQLAAASAQAEISFLFFAIITIFYF 93

The following BLAST results are available for this feature:

BLAST of Lsi07G004800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRCC3_SALSA	1.3e-10	43.04	Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2 SV=1	[more]
BRCC3_XENTR	2.3e-10	44.30	Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis GN=brcc3 PE=2 SV=1	[more]
BRCC3_XENLA	3.0e-10	44.30	Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3 PE=2 SV=1	[more]
BRCC3_CALJA	3.3e-09	37.76	Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus GN=BRCC3 PE=3 SV=2	[more]
BRCC3_HUMAN	3.3e-09	37.76	Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1 SV=2	[more]

BLAST of Lsi07G004800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWR1_CUCSA	2.4e-35	97.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004830 PE=4 SV=1	[more]
F6HX94_VITVI	4.6e-34	88.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06090 PE=4 SV=...	[more]
A0A078IZ76_BRANA	1.9e-32	79.57	BnaA07g38320D protein OS=Brassica napus GN=BnaA07g38320D PE=4 SV=1	[more]
V4SII3_9ROSI	3.3e-32	89.87	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025661mg PE=4 SV=1	[more]
A0A067ECR8_CITSI	3.3e-32	89.87	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014126mg PE=4 SV=1	[more]

BLAST of Lsi07G004800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06820.2	8.6e-32	83.75	Mov34/MPN/PAD-1 family protein	[more]
AT1G80210.1	1.9e-31	82.50	Mov34/MPN/PAD-1 family protein	[more]

BLAST of Lsi07G004800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469008\|ref\|XP_004152213.1\|	3.5e-35	97.47	PREDICTED: lys-63-specific deubiquitinase BRCC36 [Cucumis sativus]	[more]
gi\|659108552\|ref\|XP_008454260.1\|	3.5e-35	97.47	PREDICTED: COP9 signalosome complex subunit 5-like isoform X1 [Cucumis melo]	[more]
gi\|1009174413\|ref\|XP_015868334.1\|	7.3e-33	66.93	PREDICTED: lys-63-specific deubiquitinase BRCC36 [Ziziphus jujuba]	[more]
gi\|1009180540\|ref\|XP_015871678.1\|	7.3e-33	66.93	PREDICTED: lys-63-specific deubiquitinase BRCC36-like, partial [Ziziphus jujuba]	[more]
gi\|674875258\|emb\|CDY57692.1\|	2.8e-32	79.57	BnaA07g38320D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000555	JAMM/MPN+_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G004800	Lsi07G004800	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G004800.1.CDS.3	Lsi07G004800.1.CDS.3	CDS
Lsi07G004800.1.CDS.2	Lsi07G004800.1.CDS.2	CDS
Lsi07G004800.1.CDS.1	Lsi07G004800.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G004800.1	Lsi07G004800.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	PFAM	PF01398	JAB	coord: 82..148 score: 4.
None	No IPR available	PANTHER	PTHR10410	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	coord: 40..158 score: 5.5
None	No IPR available	PANTHER	PTHR10410:SF2	LYS-63-SPECIFIC DEUBIQUITINASE BRCC36	coord: 40..158 score: 5.5