Lsi07G003680.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G003680.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Humj1, putative
Location	chr07 : 3947708 .. 3948850 (-)
Sequence length	923

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGAGTTGTTCGTGAGATTAGTTGAGGTGTGTGTAAGTTGGTCCAGACACGGATCACAGATATAAAAAAAAAACTTTAGTTTTATAATTATTTGTCAATATTTCTCTAGCTTAATCTCTTTGTATGTGTGTGTGGGTAGAAGAGTGTTTATATTTGGTATTTGGCTGTTTTTATTGATATATGATGTTAGGTAGAGTTTTGAAGGGGAGAAATTAGAAGAGATCATCAGTTGCAAAAAGATGGGAACAATCACAGAGGCTTTAGAATGCTCTCTAAAAAAATGTTCTTTAAGCAGCCATCTTCAAACAACAACTCAATCTATTTCTTCTTCAGATTCTTCCAACAACGACAACGACGACGACGACGACAACAACAAAATCCCTTCTTCTATTCATCAATCAACCTCTTTGGATCTCAACTCCCATCTCTCTTTGCCTTACCATTGGGAGCAATGTCTTGATTTAAAGGTTTTTCCTTTTTCTTTCTTCATCCTCTTTTGTTTCTTACCTTTAATATATAATTCCCAATAAGAAACAAAAGTAGGGTTTGAGTTTTTCTTTTTTTAGAAAAAAAAAATCCCCCATTTTTGCCCTTTTAATGCTTCTACAATTCATGATGGAGGGTTAGGGTTTGAATTTCAAGATGATGGATTTATTTATTTATTTTTATTTTTTTTAATTTTGAAAGACAGGGGAGATATACTATATAAATTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGGTCTACAAGAGAAGATGATCAATATAGTGAAGATTATTGTTATTACTATTCTGACGACGACGACGAGAGCTCTTACGACAGCGAAGAGTCGTCGACGGAATCGTCAAATAACAACAACAACAAAAACAAGAAGTTCGTGGTAGAAGAAGAAGAAGAAGAAAAAGATGTTTTGGTGGTTGGAGGTTGCAAGAGATGCCTAATGTATTTTATGGTTCCAAAACATCTTGAAGATTGCCCTAAATGCAATGGTCAGCTTCTTCATTTTGATCGCTCATGAATATCAGACAAACCCCTTCCTCTATTTTTCAATTCCATTATTCCATTTCTTTTCTTTTTTTCTTTTTTCATGGGAAAAAGAGAGGAAGAAAGAGGAAGAAATTAAAAGAGAGAGAGAGAG

mRNA sequence

ACGAGTTGTTCGTGAGATTAGTTGAGGTGTGTGTAAGTTGGTCCAGACACGGATCACAGATATAAAAAAAAAACTTTAGTTTTATAATTATTTGTCAATATTTCTCTAGCTTAATCTCTTTGTATGTGTGTGTGGGTAGAAGAGTGTTTATATTTGGTATTTGGCTGTTTTTATTGATATATGATGTTAGGTAGAGTTTTGAAGGGGAGAAATTAGAAGAGATCATCAGTTGCAAAAAGATGGGAACAATCACAGAGGCTTTAGAATGCTCTCTAAAAAAATGTTCTTTAAGCAGCCATCTTCAAACAACAACTCAATCTATTTCTTCTTCAGATTCTTCCAACAACGACAACGACGACGACGACGACAACAACAAAATCCCTTCTTCTATTCATCAATCAACCTCTTTGGATCTCAACTCCCATCTCTCTTTGCCTTACCATTGGGAGCAATGTCTTGATTTAAAGACAGGGGAGATATACTATATAAATTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGGTCTACAAGAGAAGATGATCAATATAGTGAAGATTATTGTTATTACTATTCTGACGACGACGACGAGAGCTCTTACGACAGCGAAGAGTCGTCGACGGAATCGTCAAATAACAACAACAACAAAAACAAGAAGTTCGTGGTAGAAGAAGAAGAAGAAGAAAAAGATGTTTTGGTGGTTGGAGGTTGCAAGAGATGCCTAATGTATTTTATGGTTCCAAAACATCTTGAAGATTGCCCTAAATGCAATGGTCAGCTTCTTCATTTTGATCGCTCATGAATATCAGACAAACCCCTTCCTCTATTTTTCAATTCCATTATTCCATTTCTTTTCTTTTTTTCTTTTTTCATGGGAAAAAGAGAGGAAGAAAGAGGAAGAAATTAAAAGAGAGAGAGAGAG

Coding sequence (CDS)

ATGGGAACAATCACAGAGGCTTTAGAATGCTCTCTAAAAAAATGTTCTTTAAGCAGCCATCTTCAAACAACAACTCAATCTATTTCTTCTTCAGATTCTTCCAACAACGACAACGACGACGACGACGACAACAACAAAATCCCTTCTTCTATTCATCAATCAACCTCTTTGGATCTCAACTCCCATCTCTCTTTGCCTTACCATTGGGAGCAATGTCTTGATTTAAAGACAGGGGAGATATACTATATAAATTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGGTCTACAAGAGAAGATGATCAATATAGTGAAGATTATTGTTATTACTATTCTGACGACGACGACGAGAGCTCTTACGACAGCGAAGAGTCGTCGACGGAATCGTCAAATAACAACAACAACAAAAACAAGAAGTTCGTGGTAGAAGAAGAAGAAGAAGAAAAAGATGTTTTGGTGGTTGGAGGTTGCAAGAGATGCCTAATGTATTTTATGGTTCCAAAACATCTTGAAGATTGCCCTAAATGCAATGGTCAGCTTCTTCATTTTGATCGCTCATGA

Protein sequence

MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTREDDQYSEDYCYYYSDDDDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCNGQLLHFDRS

Homology

[Close]

BLAST of Lsi07G003680.1 vs. TrEMBL
Match: A0A0A0KTY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G009890 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.3e-62
Identity = 146/202 (72.28%), Postives = 154/202 (76.24%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQ-----ST 60
           MGTITEALECSL+K    SH Q    S SSS S ++ +          SSIHQ     ST
Sbjct: 12  MGTITEALECSLQK----SHQQPLISSSSSSSSFSSSS----------SSIHQHQHQQST 71

Query: 61  SLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRST-----REDDQYSEDYCY 120
           SLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRST      +DD+YSEDYCY
Sbjct: 72  SLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSEDYCY 131

Query: 121 YYSDD----DDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFM 180
           YYSDD    DD SSYDSEESSTES+  N  K KK  V EEEEEKDVLVVGGCKRCLMYFM
Sbjct: 132 YYSDDHEEEDDISSYDSEESSTEST--NMRKKKKTFVVEEEEEKDVLVVGGCKRCLMYFM 191

Query: 181 VPKHLEDCPKC-NGQLLHFDRS 188
           VPKHL+DCPKC NGQLLHFDRS
Sbjct: 192 VPKHLQDCPKCNNGQLLHFDRS 197

[Close]

BLAST of Lsi07G003680.1 vs. TrEMBL
Match: A0A061E5U3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008431 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 116/198 (58.59%), Postives = 141/198 (71.21%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQSTSLDLN 60
           M TIT +LE SL+ CSL+ H + +++S    +          D+N +P+++   TSL+LN
Sbjct: 6   METITASLERSLQNCSLN-HERRSSRSGGGGEQGIIRRSSTSDDNNLPTTV-SDTSLELN 65

Query: 61  SHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTRE--DDQYSEDYCYYYSDDDDE 120
           SHLSLPYHWEQCLDLKTGEIYYINWR+GMKAKEDPR+  E   D YSE+      +DDD+
Sbjct: 66  SHLSLPYHWEQCLDLKTGEIYYINWRDGMKAKEDPRTAAEYSGDFYSEE---EEEEDDDD 125

Query: 121 SSYDSEESSTESS---------NNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPK 180
           SSYDSEESS+ESS         NNNNN N   V   E+++ +VLVV GCK CLMYFMVPK
Sbjct: 126 SSYDSEESSSESSPSSRERAHYNNNNNNNHHRV---EKDKDNVLVVAGCKSCLMYFMVPK 185

Query: 181 HLEDCPKCNGQLLHFDRS 188
            +EDCPKCNGQLLHFDRS
Sbjct: 186 QVEDCPKCNGQLLHFDRS 195

[Close]

BLAST of Lsi07G003680.1 vs. TrEMBL
Match: B9RFX1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437780 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 117/199 (58.79%), Postives = 140/199 (70.35%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSH-----LQTTTQSISSSDSSN----NDNDDDDDNNKI---P 60
           M TIT +LE SL+ CSL+ H     L    +  SSSD ++       +D + NN +    
Sbjct: 6   MATITASLERSLQNCSLNHHQSRGVLGGAGERSSSSDDADFGAAQQQEDQNHNNNLNLPT 65

Query: 61  SSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTREDDQYSEDY 120
           S+    T+L+LNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR T+E   YS D 
Sbjct: 66  SNSSTDTTLELNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRVTQE---YSGD- 125

Query: 121 CYYYSDDDDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVP 180
             YYS  +DESSYDSEESS+ESS  ++ ++  +    E++E  VLVV GCK CLMYFMVP
Sbjct: 126 --YYS--EDESSYDSEESSSESSPPSSREH--YTSRGEQKEDHVLVVAGCKSCLMYFMVP 185

Query: 181 KHLEDCPKCNGQLLHFDRS 188
           K +EDCPKCNGQLLHFDRS
Sbjct: 186 KQVEDCPKCNGQLLHFDRS 194

[Close]

BLAST of Lsi07G003680.1 vs. TrEMBL
Match: V4TQC8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032280mg PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44
Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQS-------ISSSDSSNNDNDDDDDNNKIPSSIHQ 60
           M TITE+LE SL+ CSL++H + +  +        SSSD   N+NDD  + +        
Sbjct: 105 MSTITESLERSLRNCSLNNHQRRSGVNGGRGIGRSSSSDDHINNNDDLQNGD-------- 164

Query: 61  STSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTRE---DDQYSEDYCY 120
             +L+LNSH+SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR+T E   D  YSE+   
Sbjct: 165 -ATLELNSHMSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRTTAESSGDFYYSEE--- 224

Query: 121 YYSDDDDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPKH 180
              D+D++SSYDSEES++ESS   ++K       ++    +VLVV GCK CLMYFMVPK 
Sbjct: 225 --EDEDEDSSYDSEESTSESSPAPSSKEHYHRSVKDNNNNNVLVVAGCKSCLMYFMVPKQ 284

Query: 181 LEDCPKCNGQLLHFDRS 188
           +EDCPKCNGQLLHFDRS
Sbjct: 285 VEDCPKCNGQLLHFDRS 287

[Close]

BLAST of Lsi07G003680.1 vs. TrEMBL
Match: A0A067GU35_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029456mg PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-44
Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQS-------ISSSDSSNNDNDDDDDNNKIPSSIHQ 60
           M TITE+LE SL+ CSL++H + +  +        SSSD   N+NDD  + +        
Sbjct: 6   MSTITESLERSLRNCSLNNHQRRSGVNGGRGIGRSSSSDDHINNNDDLQNGD-------- 65

Query: 61  STSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTRE---DDQYSEDYCY 120
             +L+LNSH+SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR+T E   D  YSE+   
Sbjct: 66  -ATLELNSHMSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRTTAESSGDFYYSEE--- 125

Query: 121 YYSDDDDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPKH 180
              D+D++SSYDSEES++ESS   ++K       ++    +VLVV GCK CLMYFMVPK 
Sbjct: 126 --EDEDEDSSYDSEESTSESSPAPSSKEHYHRSVKDNNNNNVLVVAGCKSCLMYFMVPKQ 185

Query: 181 LEDCPKCNGQLLHFDRS 188
           +EDCPKCNGQLLHFDRS
Sbjct: 186 VEDCPKCNGQLLHFDRS 188

[Close]

BLAST of Lsi07G003680.1 vs. TAIR10
Match: AT2G33510.2 (AT2G33510.2 unknown protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-37
Identity = 101/204 (49.51%), Postives = 118/204 (57.84%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQSTSLDLN 60
           M TITE+LE S+  CSL+   +          SSN       D            +L+LN
Sbjct: 6   METITESLEKSMMNCSLNDRRRRVVGDGFGRSSSNEHMTPISDR-----------TLELN 65

Query: 61  SHLSLPYHWEQCLDLK---------------TGEIYYINWRNGMKAKEDPRSTREDDQYS 120
           SHLSLP HWEQCLDLK               TGEIYYINW+NGM+ KEDPR     D  S
Sbjct: 66  SHLSLPCHWEQCLDLKVKLITTETSNSCRFRTGEIYYINWKNGMRVKEDPRKVMNADPDS 125

Query: 121 EDYCYYYSDDDDESSYDSEESSTESS---NNNNNKNKKFVVEEEEEEKDVLVVGGCKRCL 180
            D       ++D S YDSEESS+ESS     N+ + ++   EEEEEE+DVLVV GCK C 
Sbjct: 126 GDSYGTVCSEEDSSYYDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLVVAGCKACF 185

Query: 181 MYFMVPKHLEDCPKCNGQLLHFDR 187
           MYFMVPK +EDCPKC  QLLHFDR
Sbjct: 186 MYFMVPKLVEDCPKCAAQLLHFDR 198

[Close]

BLAST of Lsi07G003680.1 vs. TAIR10
Match: AT1G28070.1 (AT1G28070.1 unknown protein)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-31
Identity = 87/191 (45.55%), Postives = 111/191 (58.12%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQSTSLDLN 60
           M  ITE LE S++ CSL     +       SD              IP S      L+L+
Sbjct: 1   MADITEYLERSMQNCSLIDRRSSMGDGFGMSDEH------------IPIS---DRFLELS 60

Query: 61  SHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTREDDQYS-----EDYCYYYSDD 120
           SH S+P H EQCLDLKTGEIYY +W +GM+ KEDPR +     Y+     E     +S +
Sbjct: 61  SHFSVPSHLEQCLDLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSGESSGTVFSSE 120

Query: 121 DDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCP 180
           +  S Y+SEESS+ESS ++   +K      EE+++DVLVV GCK CLMYFMVPK  +DCP
Sbjct: 121 EVSSYYESEESSSESSPSSRKYHK------EEQDEDVLVVAGCKACLMYFMVPKLFKDCP 170

Query: 181 KCNGQLLHFDR 187
           KC  QLLHFD+
Sbjct: 181 KCATQLLHFDQ 170

[Close]

BLAST of Lsi07G003680.1 vs. NCBI nr
Match: gi|659108282|ref|XP_008454114.1| (PREDICTED: knob-associated histidine-rich protein-like [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 8.7e-64
Identity = 148/212 (69.81%), Postives = 160/212 (75.47%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSS--------HLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIH 60
           MGTITEALECSL+KCSL+         H QT  Q + SS SS++ +     ++ I    H
Sbjct: 12  MGTITEALECSLQKCSLTHNHHHHHHHHHQTHQQPLISSSSSSSSSSSSSSSS-IHQHHH 71

Query: 61  QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRST-----REDDQYSED 120
           QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRST      +DD+YSED
Sbjct: 72  QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSED 131

Query: 121 YCYYYSD--------DDDESSYDSEESSTESSN---NNNNKNKKFVVEEEEEEKDVLVVG 180
           YCYYYSD        DDD SSYDSEESSTES+N       K K FVVEE EEEKDVLVVG
Sbjct: 132 YCYYYSDENHEEEEEDDDISSYDSEESSTESTNMMMMKKKKKKTFVVEEGEEEKDVLVVG 191

Query: 181 GCKRCLMYFMVPKHLEDCPKC-NGQLLHFDRS 188
           GCKRCLMYFMVPKHL+DCPKC NGQLLHFDRS
Sbjct: 192 GCKRCLMYFMVPKHLQDCPKCNNGQLLHFDRS 222

[Close]

BLAST of Lsi07G003680.1 vs. NCBI nr
Match: gi|700197830|gb|KGN52988.1| (hypothetical protein Csa_4G009890 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 6.2e-62
Identity = 146/202 (72.28%), Postives = 154/202 (76.24%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQ-----ST 60
           MGTITEALECSL+K    SH Q    S SSS S ++ +          SSIHQ     ST
Sbjct: 12  MGTITEALECSLQK----SHQQPLISSSSSSSSFSSSS----------SSIHQHQHQQST 71

Query: 61  SLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRST-----REDDQYSEDYCY 120
           SLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRST      +DD+YSEDYCY
Sbjct: 72  SLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSEDYCY 131

Query: 121 YYSDD----DDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFM 180
           YYSDD    DD SSYDSEESSTES+  N  K KK  V EEEEEKDVLVVGGCKRCLMYFM
Sbjct: 132 YYSDDHEEEDDISSYDSEESSTEST--NMRKKKKTFVVEEEEEKDVLVVGGCKRCLMYFM 191

Query: 181 VPKHLEDCPKC-NGQLLHFDRS 188
           VPKHL+DCPKC NGQLLHFDRS
Sbjct: 192 VPKHLQDCPKCNNGQLLHFDRS 197

[Close]

BLAST of Lsi07G003680.1 vs. NCBI nr
Match: gi|778689802|ref|XP_004152315.2| (PREDICTED: uncharacterized protein LOC101222996, partial [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 6.7e-56
Identity = 132/184 (71.74%), Postives = 140/184 (76.09%), Query Frame = 1


Query: 19  SHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQ-----STSLDLNSHLSLPYHWEQCL 78
           +H Q    S SSS S ++ +          SSIHQ     STSLDLNSHLSLPYHWEQCL
Sbjct: 2   AHQQPLISSSSSSSSFSSSS----------SSIHQHQHQQSTSLDLNSHLSLPYHWEQCL 61

Query: 79  DLKTGEIYYINWRNGMKAKEDPRST-----REDDQYSEDYCYYYSDD----DDESSYDSE 138
           DLKTGEIYYINWRNGMKAKEDPRST      +DD+YSEDYCYYYSDD    DD SSYDSE
Sbjct: 62  DLKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSEDYCYYYSDDHEEEDDISSYDSE 121

Query: 139 ESSTESSNNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-NGQLLH 188
           ESSTES+  N  K KK  V EEEEEKDVLVVGGCKRCLMYFMVPKHL+DCPKC NGQLLH
Sbjct: 122 ESSTEST--NMRKKKKTFVVEEEEEKDVLVVGGCKRCLMYFMVPKHLQDCPKCNNGQLLH 173

[Close]

BLAST of Lsi07G003680.1 vs. NCBI nr
Match: gi|590691662|ref|XP_007043845.1| (Uncharacterized protein TCM_008431 [Theobroma cacao])

HSP 1 Score: 191.0 bits (484), Expect = 1.8e-45
Identity = 116/198 (58.59%), Postives = 141/198 (71.21%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTTTQSISSSDSSNNDNDDDDDNNKIPSSIHQSTSLDLN 60
           M TIT +LE SL+ CSL+ H + +++S    +          D+N +P+++   TSL+LN
Sbjct: 6   METITASLERSLQNCSLN-HERRSSRSGGGGEQGIIRRSSTSDDNNLPTTV-SDTSLELN 65

Query: 61  SHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTRE--DDQYSEDYCYYYSDDDDE 120
           SHLSLPYHWEQCLDLKTGEIYYINWR+GMKAKEDPR+  E   D YSE+      +DDD+
Sbjct: 66  SHLSLPYHWEQCLDLKTGEIYYINWRDGMKAKEDPRTAAEYSGDFYSEE---EEEEDDDD 125

Query: 121 SSYDSEESSTESS---------NNNNNKNKKFVVEEEEEEKDVLVVGGCKRCLMYFMVPK 180
           SSYDSEESS+ESS         NNNNN N   V   E+++ +VLVV GCK CLMYFMVPK
Sbjct: 126 SSYDSEESSSESSPSSRERAHYNNNNNNNHHRV---EKDKDNVLVVAGCKSCLMYFMVPK 185

Query: 181 HLEDCPKCNGQLLHFDRS 188
            +EDCPKCNGQLLHFDRS
Sbjct: 186 QVEDCPKCNGQLLHFDRS 195

[Close]

BLAST of Lsi07G003680.1 vs. NCBI nr
Match: gi|470149188|ref|XP_004310123.1| (PREDICTED: uncharacterized protein LOC101297903 [Fragaria vesca subsp. vesca])

HSP 1 Score: 189.5 bits (480), Expect = 5.3e-45
Identity = 114/211 (54.03%), Postives = 147/211 (69.67%), Query Frame = 1


Query: 1   MGTITEALECSLKKCSLSSHLQTT-------TQSIS----------SSDSSNNDNDDDDD 60
           M TI  +LE S++ CSL+ H QTT       +QS            SS +S+  +D    
Sbjct: 6   MATIAASLERSMQNCSLNHHRQTTIGDGGNGSQSSQGSSHVGMRGRSSSTSSTSDDAAQQ 65

Query: 61  NNKIPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSTREDDQ 120
           N   P++ ++ T+L+LNS++SLPYHWEQCLDLKTGEIYYINWRNGMKA+EDPR+T    Q
Sbjct: 66  NQFTPNNNNEDTALELNSNVSLPYHWEQCLDLKTGEIYYINWRNGMKAREDPRTTA---Q 125

Query: 121 YSEDYCYYY--SDDDDESSYDSEESSTESSNNNNNKNKKFVVEEEEEEKD-----VLVVG 180
           YS D CYY    DDDD+SSYDSEESSTESS +++ + + +  +++E +++     VLVV 
Sbjct: 126 YSRD-CYYSDDDDDDDDSSYDSEESSTESSPSSSREREPYNNQQKESDQNNKQDHVLVVA 185

Query: 181 GCKRCLMYFMVPKHLEDCPKCNGQLLHFDRS 188
           GCK CLMY+MVPK  EDCPKC+GQLLHFDRS
Sbjct: 186 GCKSCLMYYMVPKQHEDCPKCSGQLLHFDRS 212

The following BLAST results are available for this feature:

BLAST of Lsi07G003680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G003680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTY3_CUCSA	4.3e-62	72.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G009890 PE=4 SV=1	[more]
A0A061E5U3_THECC	1.3e-45	58.59	Uncharacterized protein OS=Theobroma cacao GN=TCM_008431 PE=4 SV=1	[more]
B9RFX1_RICCO	1.4e-44	58.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437780 PE=4 SV=1	[more]
V4TQC8_9ROSI	9.1e-44	56.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032280mg PE=4 SV=1	[more]
A0A067GU35_CITSI	9.1e-44	56.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029456mg PE=4 SV=1	[more]

BLAST of Lsi07G003680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33510.2	1.1e-37	49.51	unknown protein	[more]
AT1G28070.1	2.1e-31	45.55	unknown protein	[more]

BLAST of Lsi07G003680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108282\|ref\|XP_008454114.1\|	8.7e-64	69.81	PREDICTED: knob-associated histidine-rich protein-like [Cucumis melo]	[more]
gi\|700197830\|gb\|KGN52988.1\|	6.2e-62	72.28	hypothetical protein Csa_4G009890 [Cucumis sativus]	[more]
gi\|778689802\|ref\|XP_004152315.2\|	6.7e-56	71.74	PREDICTED: uncharacterized protein LOC101222996, partial [Cucumis sativus]	[more]
gi\|590691662\|ref\|XP_007043845.1\|	1.8e-45	58.59	Uncharacterized protein TCM_008431 [Theobroma cacao]	[more]
gi\|470149188\|ref\|XP_004310123.1\|	5.3e-45	54.03	PREDICTED: uncharacterized protein LOC101297903 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G003680	Lsi07G003680	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G003680.1.three_prime_UTR.1	Lsi07G003680.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G003680.1.CDS.2	Lsi07G003680.1.CDS.2	CDS
Lsi07G003680.1.CDS.1	Lsi07G003680.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G003680.1.five_prime_UTR.1	Lsi07G003680.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G003680.1	Lsi07G003680.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	unknown	SSF51045	WW domain	coord: 61..96 score: 5.5
None	No IPR available	GENE3D	G3DSA:2.20.70.10		coord: 60..96 score: 2.
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 1..187 score: 6.1
None	No IPR available	PANTHER	PTHR14791:SF27	SUBFAMILY NOT NAMED	coord: 1..187 score: 6.1