Lsi06G011460.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G011460.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionzinc ion binding;nucleic acid binding
Locationchr06 : 21698198 .. 21700724 (+)
Sequence length477
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTTACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGTAAAAAAAACAAGTTTATCGTTCTGGTGAGCATTTTCTTCAGATAGTTTGCCTTTCTTTTGTATAAATACTTTGTGATTTGGATGAGCATTCTTTTTCCGTTGAGCTACACTCTCTTGATTTAGAGCCCGGTTGTATTAACTTGAAAAAAAAAATACTTTTCAAAACATTAGAGTGGTCAAACACATCAAGTTTTTCAAAATAATTTATTTTTTAAATTAAACACTTTTGAAAATATATTTTAAACACCCTAAATAAAAAGCATCAAGAAGAAGAACAAAGAATTACTTCTCTCAAGAATTGAGGTTTAAAATTTTTTTTAGAAGGTTGATTCTAGTTAATAAATTTAAAAAAGATGTGTGCTCCTTATCTTCATTTAATTTTTAAACATTTTCGGTGTATTTGTTTATAATTTAATGCGGAATAGAAAATTCAATCTCTAAACTTTTACGTAGAGAATATATATTTTAAGTTTGCTAAGCTATCCTCGGTTTGATTTTTTTTAGTATATGTTTACCATCATGTTCATTTGAGCATTTATTAGAGCCATATATTAGTTAGATAACAAAATAACAAACAGTACCTGACCAAAAAGATTTTGGAGATTTTTTCTTTTAAAGTTTGAAAATATGAATAAACATTTGAAAAAAATTCCAACTGCCAAAATAAAATATTAGTTTAAATATTACTTTGCTCCTTATATTTTTTATTTTGGTTCATTTTAACCCCAATATATAATTTCAAAATGTTCATTTTTGTTCTTATACTTTCTACTTTTGATTGTCATTACACTTTTAACTTTAGTCCATTTTAGTCGTTGTACTTTTAAAAGGTGATAATTTTGGTTTTTTCAATTTTAAGGAATCAAAATGATCACTTTTTTAAAATTCAAAGATCAAAATGAACCAATCTTGAAAGTACAAAGACTAAAATGAATATTTTAAAAGTAAATAGACCAAAATGAATTAAATTTCACAGTATATGGACCAAAATAGTATTTAAACCTAAACTACATAAATATATTTTCTTAGACTAGTAGAAAATTGAGTTGCTGTTAAATACTAAAACTTAGAACCCCTAAAACTCTCACTCTCCCAAACCCCAAAAACCCTAGGATCATAGTCCCTACCATAGAGACTATTTAAGAATGTTTTGCCGAACAAAAAGTACTAAATTCCAAGTATATTAAACTATAGAGACCAAATTCTAACCTAAAAAACTGAGTTTGTATTGCTCAAACATAAACATTTTCTTGATTTAATATGGTGCGTGTGGGTGTGGAAACAGCAGCTAGGAGTGCAATAAAAAATTGAAAAACCAAACCAATCCAAACCGATCCAAAAAGTATAAAATTAGACATGTTGATTTGTATTTGGAGAAAACCAAAAAGTATTGGTTTGAATCAGATTCTTGATTGAAAAAAACCAATCAAAACCGAATCGAACCAAGGGTATACCCTTAAAAATAAACTCTAACATTATGTATATTTTGTATTTTAATTGTTATGGTACATATATATTTATTGTTTAGAAAAAAAGACTAATTATTATTAAGTGTATGTTTTTTTATTTAGAAGATGTCAATAAAAAAAAAGAAATTGACTCACTTTTAATTTAAAATTAGTAAAAAGAACTTATTCAAAACAAAATTAAAATTTTGAAACAAAAAAAATGTAAAAAATCTAGAATCAAACCCATAGCAAATCCAAACCAGAAAAAAACAATTCATTGATTTTTTCTTTATTGGATATTAGTTTGGATCTCTTCTATAAATAATCGATTGGTTTGATTTAGTTCTTGGTTGACTCAAAAAACGACAAAAAGTCCAAACCAACTATCACTCCTAATTGCAGCCGAGGCCAGACTTAGGAAAATTCGAAGGGAAGAGGAAAGCTGAGGGAGAAGCAACAGCAGTAGCGGAGGCCAGTGATACTGATCAAACAATCCCAACTCCATGGATCAGTTCAAAGAAATTAGCCAAGGAAAAGTTTTTCTGTAGCATTTGCAAAGTTAAGGCCACAAGTGAGATTAATTTCATGCACATTTAAAAGGCAAGAAGCACATGGCCAAAGAAGGCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGGGCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGACTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA

mRNA sequence

ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTTACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGCAAGAAGCACATGGCCAAAGAAGGCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGGGCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGACTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA

Coding sequence (CDS)

ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTTACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGCAAGAAGCACATGGCCAAAGAAGGCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGGGCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGACTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA

Protein sequence

MRRAEGRTEGLSFDDQFSVRLLDQIRMNHIVNPSRGLQTVPVSSSLLLPVRPVPDPQNEEPKPFDGKKHMAKEGRRGLQTQEPSEEEDQKEKLDDPQKSAEQKAAVENKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKEKPL
Homology
[Close]
BLAST of Lsi06G011460.1 vs. NCBI nr
Match: gi|659086276|ref|XP_008443847.1| (PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-17
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 65  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICE 124
           +GKKH AKEGRR +Q    +EP++ EED KEKLD P K+ ++  A+E NKR KF C+IC 
Sbjct: 208 NGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDKNPALEKNKRLKFRCEICN 267

Query: 125 IGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE 156
           +G   MA MV+HNNG+KHKARLLKLS  CK ED K+
Sbjct: 268 VGVPWMAVMVSHNNGRKHKARLLKLSQQCKSEDQKD 303

The following BLAST results are available for this feature:
BLAST of Lsi06G011460.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G011460.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi06G011460.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G011460.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086276|ref|XP_008443847.1|2.3e-1759.38PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G011460Lsi06G011460gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G011460.1.CDS.1Lsi06G011460.1.CDS.1CDS
Lsi06G011460.1.CDS.2Lsi06G011460.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G011460.1Lsi06G011460.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 110..144
score: 5.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 104..141
score: 8.5