Lsi06G011460 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G011460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionzinc ion binding;nucleic acid binding
Locationchr06 : 21698198 .. 21700724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTTACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGTAAAAAAAACAAGTTTATCGTTCTGGTGAGCATTTTCTTCAGATAGTTTGCCTTTCTTTTGTATAAATACTTTGTGATTTGGATGAGCATTCTTTTTCCGTTGAGCTACACTCTCTTGATTTAGAGCCCGGTTGTATTAACTTGAAAAAAAAAATACTTTTCAAAACATTAGAGTGGTCAAACACATCAAGTTTTTCAAAATAATTTATTTTTTAAATTAAACACTTTTGAAAATATATTTTAAACACCCTAAATAAAAAGCATCAAGAAGAAGAACAAAGAATTACTTCTCTCAAGAATTGAGGTTTAAAATTTTTTTTAGAAGGTTGATTCTAGTTAATAAATTTAAAAAAGATGTGTGCTCCTTATCTTCATTTAATTTTTAAACATTTTCGGTGTATTTGTTTATAATTTAATGCGGAATAGAAAATTCAATCTCTAAACTTTTACGTAGAGAATATATATTTTAAGTTTGCTAAGCTATCCTCGGTTTGATTTTTTTTAGTATATGTTTACCATCATGTTCATTTGAGCATTTATTAGAGCCATATATTAGTTAGATAACAAAATAACAAACAGTACCTGACCAAAAAGATTTTGGAGATTTTTTCTTTTAAAGTTTGAAAATATGAATAAACATTTGAAAAAAATTCCAACTGCCAAAATAAAATATTAGTTTAAATATTACTTTGCTCCTTATATTTTTTATTTTGGTTCATTTTAACCCCAATATATAATTTCAAAATGTTCATTTTTGTTCTTATACTTTCTACTTTTGATTGTCATTACACTTTTAACTTTAGTCCATTTTAGTCGTTGTACTTTTAAAAGGTGATAATTTTGGTTTTTTCAATTTTAAGGAATCAAAATGATCACTTTTTTAAAATTCAAAGATCAAAATGAACCAATCTTGAAAGTACAAAGACTAAAATGAATATTTTAAAAGTAAATAGACCAAAATGAATTAAATTTCACAGTATATGGACCAAAATAGTATTTAAACCTAAACTACATAAATATATTTTCTTAGACTAGTAGAAAATTGAGTTGCTGTTAAATACTAAAACTTAGAACCCCTAAAACTCTCACTCTCCCAAACCCCAAAAACCCTAGGATCATAGTCCCTACCATAGAGACTATTTAAGAATGTTTTGCCGAACAAAAAGTACTAAATTCCAAGTATATTAAACTATAGAGACCAAATTCTAACCTAAAAAACTGAGTTTGTATTGCTCAAACATAAACATTTTCTTGATTTAATATGGTGCGTGTGGGTGTGGAAACAGCAGCTAGGAGTGCAATAAAAAATTGAAAAACCAAACCAATCCAAACCGATCCAAAAAGTATAAAATTAGACATGTTGATTTGTATTTGGAGAAAACCAAAAAGTATTGGTTTGAATCAGATTCTTGATTGAAAAAAACCAATCAAAACCGAATCGAACCAAGGGTATACCCTTAAAAATAAACTCTAACATTATGTATATTTTGTATTTTAATTGTTATGGTACATATATATTTATTGTTTAGAAAAAAAGACTAATTATTATTAAGTGTATGTTTTTTTATTTAGAAGATGTCAATAAAAAAAAAGAAATTGACTCACTTTTAATTTAAAATTAGTAAAAAGAACTTATTCAAAACAAAATTAAAATTTTGAAACAAAAAAAATGTAAAAAATCTAGAATCAAACCCATAGCAAATCCAAACCAGAAAAAAACAATTCATTGATTTTTTCTTTATTGGATATTAGTTTGGATCTCTTCTATAAATAATCGATTGGTTTGATTTAGTTCTTGGTTGACTCAAAAAACGACAAAAAGTCCAAACCAACTATCACTCCTAATTGCAGCCGAGGCCAGACTTAGGAAAATTCGAAGGGAAGAGGAAAGCTGAGGGAGAAGCAACAGCAGTAGCGGAGGCCAGTGATACTGATCAAACAATCCCAACTCCATGGATCAGTTCAAAGAAATTAGCCAAGGAAAAGTTTTTCTGTAGCATTTGCAAAGTTAAGGCCACAAGTGAGATTAATTTCATGCACATTTAAAAGGCAAGAAGCACATGGCCAAAGAAGGCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGGGCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGACTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA

mRNA sequence

ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTTACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGCAAGAAGCACATGGCCAAAGAAGGCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGGGCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGACTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA

Coding sequence (CDS)

ATGCGTAGGGCTGAGGGCAGGACGGAAGGCTTATCGTTTGACGATCAGTTTTCCGTCAGATTGTTGGACCAGATCAGGATGAATCACATCGTGAATCCGTCTAGAGGTTTACAGACTGTTCCAGTTTCCAGTTCTTTGCTCTTACCTGTTCGTCCAGTTCCGGACCCTCAAAACGAAGAACCGAAGCCTTTCGATGGCAAGAAGCACATGGCCAAAGAAGGCCGGCGTGGCTTACAAACTCAAGAACCGAGCGAAGAGGAAGATCAGAAAGAAAAATTAGACGATCCTCAGAAGAGCGCAGAACAAAAAGCAGCCGTTGAAAACAAGCGGGCTAAATTCTGGTGCAAGATTTGCGAAATTGGAACCCATTGTATGGCTAATATGGTCACACATAACAATGGGAAGAAGCATAAGGCTCGTCTGTTGAAACTTTCTAATGACTGCAAATTGGAAGACCACAAGGAGAAACCCTTATGA

Protein sequence

MRRAEGRTEGLSFDDQFSVRLLDQIRMNHIVNPSRGLQTVPVSSSLLLPVRPVPDPQNEEPKPFDGKKHMAKEGRRGLQTQEPSEEEDQKEKLDDPQKSAEQKAAVENKRAKFWCKICEIGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKEKPL
Homology
[Close]
BLAST of Lsi06G011460 vs. NCBI nr
Match: gi|659086276|ref|XP_008443847.1| (PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-17
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 65  DGKKHMAKEGRRGLQT---QEPSE-EEDQKEKLDDPQKSAEQKAAVE-NKRAKFWCKICE 124
           +GKKH AKEGRR +Q    +EP++ EED KEKLD P K+ ++  A+E NKR KF C+IC 
Sbjct: 208 NGKKHKAKEGRRQVQQTTHKEPNQGEEDLKEKLDHPVKNIDKNPALEKNKRLKFRCEICN 267

Query: 125 IGTHCMANMVTHNNGKKHKARLLKLSNDCKLEDHKE 156
           +G   MA MV+HNNG+KHKARLLKLS  CK ED K+
Sbjct: 268 VGVPWMAVMVSHNNGRKHKARLLKLSQQCKSEDQKD 303

The following BLAST results are available for this feature:
BLAST of Lsi06G011460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G011460 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi06G011460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G011460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086276|ref|XP_008443847.1|2.3e-1759.38PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G011460.1Lsi06G011460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 110..144
score: 5.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 104..141
score: 8.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G011460Cla018742Watermelon (97103) v1lsiwmB421
Lsi06G011460Cla97C06G121720Watermelon (97103) v2lsiwmbB380
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G011460Wax gourdlsiwgoB500
Lsi06G011460Wax gourdlsiwgoB503
Lsi06G011460Bottle gourd (USVL1VR-Ls)lsilsiB061
Lsi06G011460Cucumber (Gy14) v1cgylsiB440
Lsi06G011460Cucurbita maxima (Rimu)cmalsiB066
Lsi06G011460Cucurbita maxima (Rimu)cmalsiB131
Lsi06G011460Cucurbita maxima (Rimu)cmalsiB447
Lsi06G011460Cucurbita moschata (Rifu)cmolsiB053
Lsi06G011460Cucurbita moschata (Rifu)cmolsiB121
Lsi06G011460Cucurbita pepo (Zucchini)cpelsiB307
Lsi06G011460Cucurbita pepo (Zucchini)cpelsiB567
Lsi06G011460Wild cucumber (PI 183967)cpilsiB075
Lsi06G011460Wild cucumber (PI 183967)cpilsiB301
Lsi06G011460Cucumber (Chinese Long) v2culsiB076
Lsi06G011460Cucumber (Chinese Long) v2culsiB301
Lsi06G011460Melon (DHL92) v3.5.1lsimeB402
Lsi06G011460Melon (DHL92) v3.5.1lsimeB424
Lsi06G011460Watermelon (Charleston Gray)lsiwcgB370
Lsi06G011460Watermelon (Charleston Gray)lsiwcgB379
Lsi06G011460Watermelon (97103) v1lsiwmB404
Lsi06G011460Cucumber (Gy14) v2cgyblsiB071
Lsi06G011460Melon (DHL92) v3.6.1lsimedB423
Lsi06G011460Melon (DHL92) v3.6.1lsimedB444
Lsi06G011460Silver-seed gourdcarlsiB117
Lsi06G011460Silver-seed gourdcarlsiB461
Lsi06G011460Cucumber (Chinese Long) v3cuclsiB085
Lsi06G011460Cucumber (Chinese Long) v3cuclsiB146
Lsi06G011460Cucumber (Chinese Long) v3cuclsiB321
Lsi06G011460Watermelon (97103) v2lsiwmbB372