Lsi06G010950.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G010950.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 21229278 .. 21229655 (-)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

mRNA sequence

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

Coding sequence (CDS)

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

Protein sequence

MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGGHGK

Homology

[Close]

BLAST of Lsi06G010950.1 vs. TrEMBL
Match: A0A0A0LWP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLS-HSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M   KSLVLAALLVSSLFV+S  SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSG--SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           SGSGSG  S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR G GSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 126
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

[Close]

BLAST of Lsi06G010950.1 vs. TrEMBL
Match: U5FI04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGEGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSG-------SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGG--GSGY 120
           GSGSGSG       SSSSSS SSSSS  GSD+GSEAGSYAGSRAGSGSGGR+GG  GSG 
Sbjct: 61  GSGSGSGSRSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGEGSGS 120

Query: 121 GGGYGSGYGGGHGK 126
           G G+G GYG G G+
Sbjct: 121 GSGHGEGYGEGSGR 134

[Close]

BLAST of Lsi06G010950.1 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 1   MSCFKSL-VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M+  KSL ++  LL+S   +LS  RVARKDLGIDLGGVGVG+G GIG+G+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSS----SSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           SGSGSGSGSSSS    SSSSSS SG+GS++GS AGSYAGSRAGSGSGG   GGSGYG GY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GSGYGGGHG 125
           G G G G G
Sbjct: 121 GGGSGRGGG 129

[Close]

BLAST of Lsi06G010950.1 vs. TrEMBL
Match: F6HS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+  +SL L ALLVSS  V+S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGLDLGGVGVGLGVGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSS---SSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           GSGSGSG+SS   S+SSS S SGSGS++GS AGSYAGSRAGSGSG  +G GSG G G G 
Sbjct: 61  GSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQGH 120

Query: 121 GYGGGHG 125
           G G G G
Sbjct: 121 GQGSGSG 127

[Close]

BLAST of Lsi06G010950.1 vs. TrEMBL
Match: A5AIY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-18
Identity = 91/129 (70.54%), Postives = 102/129 (79.07%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+  +SL L ALLVSS  V+S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGVDLGGVGVGVGIGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSS-----SSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           GSGSGSGS +SS     SSS S SGSGS++GS AGSYAGSRAGSGSG  +G GSG G G 
Sbjct: 61  GSGSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQ 120

Query: 121 GSGYGGGHG 125
           G G G G G
Sbjct: 121 GHGQGSGSG 129

[Close]

BLAST of Lsi06G010950.1 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-18
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 1


Query: 6   SLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG 65
           SL+L  L++++  ++S SRVARKDLG+DLGG+G GIG GIGIG GGSGSG+G+GSGSG G
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  ---SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGG 125
              S SSSSSSSSSSS G G D+GSEAGSYAGS AGSGSGGR G G G G G G G+GGG
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

[Close]

BLAST of Lsi06G010950.1 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein)

HSP 1 Score: 83.6 bits (205), Expect = 9.6e-17
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 8   VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLG---GSGSGSGSGSGSGS 67
           +L  +++SSL +L+ SR+ARKDLGIDLGG+G+G+G G+GIGLG   GSG+G+GSGSGSGS
Sbjct: 9   LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68

Query: 68  GSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG 103
            S SSSSSSSSSSSSGSG  +GS AGS+AGSRAGSGSG
Sbjct: 69  RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

[Close]

BLAST of Lsi06G010950.1 vs. NCBI nr
Match: gi|449457853|ref|XP_004146662.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLS-HSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M   KSLVLAALLVSSLFV+S  SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSG--SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           SGSGSG  S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR G GSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 126
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

[Close]

BLAST of Lsi06G010950.1 vs. NCBI nr
Match: gi|743941324|ref|XP_011015149.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica])

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+GAG+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGAGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSGSSSSSSS-----SSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           GSGSGS S SSSSS     SSSSS  GSD+GSEAGSYAGSRAGSGSGGR+GGG+G G G+
Sbjct: 61  GSGSGSSSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGAGSGSGH 120

Query: 121 GSGYGGGHGK 126
           G GYG G G+
Sbjct: 121 GEGYGEGSGR 130

[Close]

BLAST of Lsi06G010950.1 vs. NCBI nr
Match: gi|566215231|ref|XP_006372107.1| (hypothetical protein POPTR_0018s10920g [Populus trichocarpa])

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGEGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSG-------SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGG--GSGY 120
           GSGSGSG       SSSSSS SSSSS  GSD+GSEAGSYAGSRAGSGSGGR+GG  GSG 
Sbjct: 61  GSGSGSGSRSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGEGSGS 120

Query: 121 GGGYGSGYGGGHGK 126
           G G+G GYG G G+
Sbjct: 121 GSGHGEGYGEGSGR 134

[Close]

BLAST of Lsi06G010950.1 vs. NCBI nr
Match: gi|743807847|ref|XP_011018098.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Populus euphratica])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+GAG+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGAGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSGSSSSSSS-----SSSSSGSGSDSGSEAGSYAGSRA--GSGSGGREGGGSGYGG 120
           GSGSGS S SSSSS     SSSSS  GSD+GSEAGSYAGSRA  GSGSGGR+GGG+G G 
Sbjct: 61  GSGSGSSSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGSGGRQGGGAGSGS 120

Query: 121 GYGSGYGGGHGK 126
           G+G GYG G G+
Sbjct: 121 GHGEGYGEGSGR 132

[Close]

BLAST of Lsi06G010950.1 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 1   MSCFKSL-VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M+  KSL ++  LL+S   +LS  RVARKDLGIDLGGVGVG+G GIG+G+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSS----SSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           SGSGSGSGSSSS    SSSSSS SG+GS++GS AGSYAGSRAGSGSGG   GGSGYG GY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GSGYGGGHG 125
           G G G G G
Sbjct: 121 GGGSGRGGG 129

The following BLAST results are available for this feature:

BLAST of Lsi06G010950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G010950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWP0_CUCSA	1.1e-29	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1	[more]
U5FI04_POPTR	1.2e-18	70.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1	[more]
A0A0A0LTK9_CUCSA	3.4e-18	72.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1	[more]
F6HS59_VITVI	5.7e-18	71.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=...	[more]
A5AIY9_VITVI	9.8e-18	70.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1	[more]

BLAST of Lsi06G010950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30460.1	2.3e-18	68.85	glycine-rich protein	[more]
AT4G30450.1	9.6e-17	71.43	glycine-rich protein	[more]

BLAST of Lsi06G010950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457853\|ref\|XP_004146662.1\|	1.6e-29	87.50	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]
gi\|743941324\|ref\|XP_011015149.1\|	6.7e-20	71.54	PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica]	[more]
gi\|566215231\|ref\|XP_006372107.1\|	1.7e-18	70.15	hypothetical protein POPTR_0018s10920g [Populus trichocarpa]	[more]
gi\|743807847\|ref\|XP_011018098.1\|	2.2e-18	70.45	PREDICTED: putative glycine-rich cell wall structural protein 1 [Populus euphrat...	[more]
gi\|778660326\|ref\|XP_004146660.2\|	4.8e-18	72.09	PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G010950	Lsi06G010950	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G010950.1.CDS.1	Lsi06G010950.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G010950.1	Lsi06G010950.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38934	FAMILY NOT NAMED	coord: 1..124 score: 3.1