Lsi06G010950 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G010950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 21229278 .. 21229655 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

mRNA sequence

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

Coding sequence (CDS)

ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA

Protein sequence

MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGGHGK

Homology

[Close]

BLAST of Lsi06G010950 vs. TrEMBL
Match: A0A0A0LWP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLS-HSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M   KSLVLAALLVSSLFV+S  SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSG--SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           SGSGSG  S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR G GSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 126
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

[Close]

BLAST of Lsi06G010950 vs. TrEMBL
Match: U5FI04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGEGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSG-------SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGG--GSGY 120
           GSGSGSG       SSSSSS SSSSS  GSD+GSEAGSYAGSRAGSGSGGR+GG  GSG 
Sbjct: 61  GSGSGSGSRSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGEGSGS 120

Query: 121 GGGYGSGYGGGHGK 126
           G G+G GYG G G+
Sbjct: 121 GSGHGEGYGEGSGR 134

[Close]

BLAST of Lsi06G010950 vs. TrEMBL
Match: A0A0A0LTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 1   MSCFKSL-VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M+  KSL ++  LL+S   +LS  RVARKDLGIDLGGVGVG+G GIG+G+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSS----SSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           SGSGSGSGSSSS    SSSSSS SG+GS++GS AGSYAGSRAGSGSGG   GGSGYG GY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GSGYGGGHG 125
           G G G G G
Sbjct: 121 GGGSGRGGG 129

[Close]

BLAST of Lsi06G010950 vs. TrEMBL
Match: F6HS59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+  +SL L ALLVSS  V+S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGLDLGGVGVGLGVGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSS---SSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           GSGSGSG+SS   S+SSS S SGSGS++GS AGSYAGSRAGSGSG  +G GSG G G G 
Sbjct: 61  GSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQGH 120

Query: 121 GYGGGHG 125
           G G G G
Sbjct: 121 GQGSGSG 127

[Close]

BLAST of Lsi06G010950 vs. TrEMBL
Match: A5AIY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-18
Identity = 91/129 (70.54%), Postives = 102/129 (79.07%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+  +SL L ALLVSS  V+S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSGSGS
Sbjct: 1   MAGLRSLALVALLVSSFVVVSQSRVARKDLGVDLGGVGVGVGIGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSSS-----SSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           GSGSGSGS +SS     SSS S SGSGS++GS AGSYAGSRAGSGSG  +G GSG G G 
Sbjct: 61  GSGSGSGSGASSGAGSASSSGSGSGSGSEAGSYAGSYAGSRAGSGSGSNQGRGSGSGSGQ 120

Query: 121 GSGYGGGHG 125
           G G G G G
Sbjct: 121 GHGQGSGSG 129

[Close]

BLAST of Lsi06G010950 vs. TAIR10
Match: AT4G30460.1 (AT4G30460.1 glycine-rich protein)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-18
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 1


Query: 6   SLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG 65
           SL+L  L++++  ++S SRVARKDLG+DLGG+G GIG GIGIG GGSGSG+G+GSGSG G
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  ---SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGG 125
              S SSSSSSSSSSS G G D+GSEAGSYAGS AGSGSGGR G G G G G G G+GGG
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

[Close]

BLAST of Lsi06G010950 vs. TAIR10
Match: AT4G30450.1 (AT4G30450.1 glycine-rich protein)

HSP 1 Score: 83.6 bits (205), Expect = 9.6e-17
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 8   VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLG---GSGSGSGSGSGSGS 67
           +L  +++SSL +L+ SR+ARKDLGIDLGG+G+G+G G+GIGLG   GSG+G+GSGSGSGS
Sbjct: 9   LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68

Query: 68  GSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG 103
            S SSSSSSSSSSSSGSG  +GS AGS+AGSRAGSGSG
Sbjct: 69  RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: gi|449457853|ref|XP_004146662.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLS-HSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M   KSLVLAALLVSSLFV+S  SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSG
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSG--SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
           SGSGSG  S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR G GSGYGGGYGS
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120

Query: 121 GYGGGHGK 126
           GYGGGHGK
Sbjct: 121 GYGGGHGK 128

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: gi|743941324|ref|XP_011015149.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica])

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+GAG+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGAGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSGSSSSSSS-----SSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           GSGSGS S SSSSS     SSSSS  GSD+GSEAGSYAGSRAGSGSGGR+GGG+G G G+
Sbjct: 61  GSGSGSSSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGAGSGSGH 120

Query: 121 GSGYGGGHGK 126
           G GYG G G+
Sbjct: 121 GEGYGEGSGR 130

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: gi|566215231|ref|XP_006372107.1| (hypothetical protein POPTR_0018s10920g [Populus trichocarpa])

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+G G+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGEGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSG-------SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGG--GSGY 120
           GSGSGSG       SSSSSS SSSSS  GSD+GSEAGSYAGSRAGSGSGGR+GG  GSG 
Sbjct: 61  GSGSGSGSRSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGGRQGGGEGSGS 120

Query: 121 GGGYGSGYGGGHGK 126
           G G+G GYG G G+
Sbjct: 121 GSGHGEGYGEGSGR 134

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: gi|743807847|ref|XP_011018098.1| (PREDICTED: putative glycine-rich cell wall structural protein 1 [Populus euphratica])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 1   MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
           M+ ++SL L ALLV    + S SRVARKDLG+DLGGVGVG+GAG+G+GLGGSGSGSG+GS
Sbjct: 1   MAPYRSLALIALLVIMSAIESESRVARKDLGVDLGGVGVGLGAGVGVGLGGSGSGSGAGS 60

Query: 61  GSGSGSGSSSSSSS-----SSSSSGSGSDSGSEAGSYAGSRA--GSGSGGREGGGSGYGG 120
           GSGSGS S SSSSS     SSSSS  GSD+GSEAGSYAGSRA  GSGSGGR+GGG+G G 
Sbjct: 61  GSGSGSSSGSSSSSSSSSRSSSSSNGGSDAGSEAGSYAGSRAGSGSGSGGRQGGGAGSGS 120

Query: 121 GYGSGYGGGHGK 126
           G+G GYG G G+
Sbjct: 121 GHGEGYGEGSGR 132

[Close]

BLAST of Lsi06G010950 vs. NCBI nr
Match: gi|778660326|ref|XP_004146660.2| (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 1


Query: 1   MSCFKSL-VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
           M+  KSL ++  LL+S   +LS  RVARKDLGIDLGGVGVG+G GIG+G+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSS----SSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGY 120
           SGSGSGSGSSSS    SSSSSS SG+GS++GS AGSYAGSRAGSGSGG   GGSGYG GY
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 GSGYGGGHG 125
           G G G G G
Sbjct: 121 GGGSGRGGG 129

The following BLAST results are available for this feature:

BLAST of Lsi06G010950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G010950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWP0_CUCSA	1.1e-29	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G277980 PE=4 SV=1	[more]
U5FI04_POPTR	1.2e-18	70.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10920g PE=4 SV=1	[more]
A0A0A0LTK9_CUCSA	3.4e-18	72.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G278500 PE=4 SV=1	[more]
F6HS59_VITVI	5.7e-18	71.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00680 PE=4 SV=...	[more]
A5AIY9_VITVI	9.8e-18	70.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013093 PE=4 SV=1	[more]

BLAST of Lsi06G010950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30460.1	2.3e-18	68.85	glycine-rich protein	[more]
AT4G30450.1	9.6e-17	71.43	glycine-rich protein	[more]

BLAST of Lsi06G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457853\|ref\|XP_004146662.1\|	1.6e-29	87.50	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]
gi\|743941324\|ref\|XP_011015149.1\|	6.7e-20	71.54	PREDICTED: glycine-rich cell wall structural protein 2-like [Populus euphratica]	[more]
gi\|566215231\|ref\|XP_006372107.1\|	1.7e-18	70.15	hypothetical protein POPTR_0018s10920g [Populus trichocarpa]	[more]
gi\|743807847\|ref\|XP_011018098.1\|	2.2e-18	70.45	PREDICTED: putative glycine-rich cell wall structural protein 1 [Populus euphrat...	[more]
gi\|778660326\|ref\|XP_004146660.2\|	4.8e-18	72.09	PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010950.1	Lsi06G010950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38934	FAMILY NOT NAMED	coord: 1..124 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G010950	Wild cucumber (PI 183967)	cpilsiB064
Lsi06G010950	Cucumber (Chinese Long) v2	culsiB065
Lsi06G010950	Melon (DHL92) v3.5.1	lsimeB404
Lsi06G010950	Watermelon (Charleston Gray)	lsiwcgB374
Lsi06G010950	Watermelon (97103) v1	lsiwmB416
Lsi06G010950	Cucumber (Gy14) v2	cgyblsiB060
Lsi06G010950	Melon (DHL92) v3.6.1	lsimedB426
Lsi06G010950	Silver-seed gourd	carlsiB116
Lsi06G010950	Silver-seed gourd	carlsiB463
Lsi06G010950	Cucumber (Chinese Long) v3	cuclsiB074
Lsi06G010950	Watermelon (97103) v2	lsiwmbB376
Lsi06G010950	Wax gourd	lsiwgoB523
Lsi06G010950	Cucurbita maxima (Rimu)	cmalsiB077
Lsi06G010950	Cucurbita maxima (Rimu)	cmalsiB148
Lsi06G010950	Cucurbita moschata (Rifu)	cmolsiB063
Lsi06G010950	Cucurbita moschata (Rifu)	cmolsiB132
Lsi06G010950	Cucurbita pepo (Zucchini)	cpelsiB303
Lsi06G010950	Cucurbita pepo (Zucchini)	cpelsiB558