Lsi06G010680.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G010680.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	SAM domain (Sterile alpha motif) protein, putative
Location	chr06 : 20917442 .. 20918236 (-)
Sequence length	795

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTGGTTCTCTTGGCTCTCAAGAACCGGCCTCGACCCACTTCACACCTACGAATACGGCCTTCTTTTTGCCCGAAATGCCCTCAATCCCGACGACATTCCTCGTTTCAACCACCATTTTCTTCAAAATATCGGAATCTCCATCGCCAAACACCGCCTCGAGATTCTCAAACTCGCCAAATCCCACTCCCACCAACAAACCCATAACAAATCCCTTCTTTCCGCCTTCACCAAGACCAAAAATTGCCTCAGAAACTGCCTCCGAAAGCTAATTTTACCCACCGCCAGGCCCGAGAAGGGCCTTTTCCGGGAAGACGCGGCGGTGATTTCCCCTGAGCCGCCGACCGTGGAAGAGGAGGAGCAGGAGGTCAAGGTTAAGGAAGTCCTCAAGCCGCCGAGACGACGGAGTAAACACGTGTCGTTGTCGGGGCCTTTGGACGGGAGAACGCACGAGAAGTTCGTGATGAGCAGTAAGAGCTTGAAGTTATCTGGGCCGTTGGATAGGAAAGAGAGGCCCCCGCTTATGTTTCCGAGAAGCCCAAGAACATCTGGGCCTCTAGATGGGAGAATGTCGGATTGGGCCTTGAGTAAAAGCCCAAAATTGAATGGGCCGCCGCAAGGGAGAATGATGAGGCTGATTCCGCCAAGCCGGAGCCCAAGAGTATCTGGGCCGTTAGATGGACGAGATGGAAGCCCAAATATTTGCTGCCGGTGTAATAGGGAAAGAATAGAAACCGATGATGATTATCATTCCTTGTGGGTTTCATTGTTTTATGACATGAAGCCAACTTAA

mRNA sequence

ATGGACTGGTTCTCTTGGCTCTCAAGAACCGGCCTCGACCCACTTCACACCTACGAATACGGCCTTCTTTTTGCCCGAAATGCCCTCAATCCCGACGACATTCCTCGTTTCAACCACCATTTTCTTCAAAATATCGGAATCTCCATCGCCAAACACCGCCTCGAGATTCTCAAACTCGCCAAATCCCACTCCCACCAACAAACCCATAACAAATCCCTTCTTTCCGCCTTCACCAAGACCAAAAATTGCCTCAGAAACTGCCTCCGAAAGCTAATTTTACCCACCGCCAGGCCCGAGAAGGGCCTTTTCCGGGAAGACGCGGCGGTGATTTCCCCTGAGCCGCCGACCGTGGAAGAGGAGGAGCAGGAGGTCAAGGTTAAGGAAGTCCTCAAGCCGCCGAGACGACGGAGTAAACACGTGTCGTTGTCGGGGCCTTTGGACGGGAGAACGCACGAGAAGTTCGTGATGAGCAGTAAGAGCTTGAAGTTATCTGGGCCGTTGGATAGGAAAGAGAGGCCCCCGCTTATGTTTCCGAGAAGCCCAAGAACATCTGGGCCTCTAGATGGGAGAATGTCGGATTGGGCCTTGAGTAAAAGCCCAAAATTGAATGGGCCGCCGCAAGGGAGAATGATGAGGCTGATTCCGCCAAGCCGGAGCCCAAGAGTATCTGGGCCGTTAGATGGACGAGATGGAAGCCCAAATATTTGCTGCCGGTGTAATAGGGAAAGAATAGAAACCGATGATGATTATCATTCCTTGTGGGTTTCATTGTTTTATGACATGAAGCCAACTTAA

Coding sequence (CDS)

ATGGACTGGTTCTCTTGGCTCTCAAGAACCGGCCTCGACCCACTTCACACCTACGAATACGGCCTTCTTTTTGCCCGAAATGCCCTCAATCCCGACGACATTCCTCGTTTCAACCACCATTTTCTTCAAAATATCGGAATCTCCATCGCCAAACACCGCCTCGAGATTCTCAAACTCGCCAAATCCCACTCCCACCAACAAACCCATAACAAATCCCTTCTTTCCGCCTTCACCAAGACCAAAAATTGCCTCAGAAACTGCCTCCGAAAGCTAATTTTACCCACCGCCAGGCCCGAGAAGGGCCTTTTCCGGGAAGACGCGGCGGTGATTTCCCCTGAGCCGCCGACCGTGGAAGAGGAGGAGCAGGAGGTCAAGGTTAAGGAAGTCCTCAAGCCGCCGAGACGACGGAGTAAACACGTGTCGTTGTCGGGGCCTTTGGACGGGAGAACGCACGAGAAGTTCGTGATGAGCAGTAAGAGCTTGAAGTTATCTGGGCCGTTGGATAGGAAAGAGAGGCCCCCGCTTATGTTTCCGAGAAGCCCAAGAACATCTGGGCCTCTAGATGGGAGAATGTCGGATTGGGCCTTGAGTAAAAGCCCAAAATTGAATGGGCCGCCGCAAGGGAGAATGATGAGGCTGATTCCGCCAAGCCGGAGCCCAAGAGTATCTGGGCCGTTAGATGGACGAGATGGAAGCCCAAATATTTGCTGCCGGTGTAATAGGGAAAGAATAGAAACCGATGATGATTATCATTCCTTGTGGGTTTCATTGTTTTATGACATGAAGCCAACTTAA

Protein sequence

MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLAKSHSHQQTHNKSLLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPEPPTVEEEEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRKERPPLMFPRSPRTSGPLDGRMSDWALSKSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPNICCRCNRERIETDDDYHSLWVSLFYDMKPT

Homology

[Close]

BLAST of Lsi06G010680.1 vs. TrEMBL
Match: A0A0A0LTT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264010 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.8e-115
Identity = 218/274 (79.56%), Postives = 233/274 (85.04%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGLLFARNAL P+DIPRFNHHFLQ IGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSHSHQQTHNKSLLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPEPPTVEEE 120
           KSH+HQ   N  L+SAF KTK CLRNCLR+LI P+   EK        +ISPEPP    +
Sbjct: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEK-------PIISPEPPPSSLD 120

Query: 121 EQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRKERPPL----- 180
           E +VKVKEVLKPPRRRSKHVSLSGPLD RTHEKFVMSSKSLKLSGPLDRKER P      
Sbjct: 121 EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSSKSLKLSGPLDRKERAPSSPSPS 180

Query: 181 ----MFPRSPRTSGPLDGRMSDWALS-KSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRD 240
               MF RSPRTSGPLDGR+SDW+LS KSPK+NGPPQGRMMRLIPPSRSPRVSGPLDGRD
Sbjct: 181 PLPPMFTRSPRTSGPLDGRISDWSLSNKSPKMNGPPQGRMMRLIPPSRSPRVSGPLDGRD 240

Query: 241 GSPNICCRCNRERIETDDDYHSLWVSLFYDMKPT 265
           GSP ICCRCNRER+E++DDYHSLWVSLFYDMKPT
Sbjct: 241 GSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 266

[Close]

BLAST of Lsi06G010680.1 vs. TrEMBL
Match: W9RH70_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016186 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.1e-45
Identity = 120/279 (43.01%), Postives = 168/279 (60.22%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+TGLDP   Y+YGL FARN L  +DI  FNH FLQ++GI++AKHRLEILK+A
Sbjct: 1   MDWFSWLSKTGLDPPLIYDYGLAFARNELQYEDIAYFNHEFLQSMGITVAKHRLEILKVA 60

Query: 61  KSHSHQQTHNKS-LLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPE---PPT 120
           K  +     + S L  A +KTK      + K +       K L        S E      
Sbjct: 61  KKENGGNPRSLSRLFLALSKTKKSFGKYISKFVFQDDMSSKDLPDHHYRERSQEHWRGAL 120

Query: 121 VEEEEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRKERPPLM 180
           + ++    ++++    P  +++ ++LSGPLD R HE+ + ++KSLKLSGPLD K    LM
Sbjct: 121 LRKQRSGDEMRD--NGPGLKNRALALSGPLDSRVHERLISNTKSLKLSGPLDGKLHERLM 180

Query: 181 FP-RSPRT--SGPLDGR-----MSDWALSKSPKLNGPPQGRM--MRLIPPSRSPRVSGPL 240
           +P RSP+   SGPL+GR           ++SP+L+GP  GR+     +  ++SP++SGPL
Sbjct: 181 YPNRSPKLTGSGPLNGRGPLPERLMITTTRSPRLSGPLDGRVHDRIFVTTTKSPKMSGPL 240

Query: 241 DGRDGSPNICCRCNRERIETDD-DYHSLWVSLFYDMKPT 265
           DGR  SP  C    +E+ + D+ D HSLW +LF+DMKPT
Sbjct: 241 DGRVLSPKFCTPYEKEKADVDEFDDHSLWTTLFHDMKPT 277

[Close]

BLAST of Lsi06G010680.1 vs. TrEMBL
Match: A0A059CKQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00478 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 118/281 (41.99%), Postives = 163/281 (58.01%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+  LDP   YEYG +FA N L  +DI  F+H FLQ++GIS+AKHRLEILKLA
Sbjct: 1   MDWFSWLSKGSLDPSLIYEYGRVFALNQLQEEDISYFDHEFLQSMGISVAKHRLEILKLA 60

Query: 61  KSHSHQQTHNKSLLSAFTKTKNCLRNCLRKLIL------PTARPEKGLFRED--AAVISP 120
           K           L+ AF +TK  + N + KL+         A PE   +RE    A++S 
Sbjct: 61  KKELGGPRPISGLIMAFNRTKRSVGNYISKLVSHDQDKDVKASPEPSRYREQWRGALLSR 120

Query: 121 EPPTVEEEEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRK-- 180
           +       E+E+K K ++   RR    ++LSGPLDGR  +K++M+ KS + SGPLD +  
Sbjct: 121 K----HRSEKEMKQKTIVCQDRR---SMTLSGPLDGRVQDKYMMAHKSQQFSGPLDTRAH 180

Query: 181 ERPPLMFPRSPR---TSGPLDGRMSDWAL--SKSPKLNGPPQGRMMRLIPPSRSPRVSGP 240
           ++P    PR P    +SGPLD R+ +  L   +SPKL+G   GR+       RSP++S P
Sbjct: 181 QKPVFALPRCPSPKFSSGPLDARVDEKVLYPMRSPKLSGMLGGRIPERFTVPRSPKLSRP 240

Query: 241 LDGRDGSPNIC-CRCNRERIET-DDDYHSLWVSLFYDMKPT 265
           L+    SP +     N+ +++  + D HSLW  LF DMKPT
Sbjct: 241 LERTAQSPKLLWSDFNKVKMDAYEYDEHSLWAKLFDDMKPT 274

[Close]

BLAST of Lsi06G010680.1 vs. TrEMBL
Match: A0A067F767_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025779mg PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 118/279 (42.29%), Postives = 157/279 (56.27%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLSRT L+P   YEYGL F RN L  +D+  FNH FLQ++GIS+AKHRLEILKLA
Sbjct: 1   MDWFSWLSRTNLEPSLVYEYGLAFVRNELQKEDLSYFNHEFLQSMGISVAKHRLEILKLA 60

Query: 61  KSHSHQQTHNKS-LLSAFTKTKNCLRNCLRKLILPTA-------RPEKGLFRED--AAVI 120
           +        + S L+SA  KT+  +  CL KLI            PE  L++E    A++
Sbjct: 61  RKEVGVGPKSFSKLVSALNKTRKNIAKCLHKLIFHDVVSIKRLPEPEPTLYQEQCKGAIM 120

Query: 121 SPEPPTVEEEEQEVKVKEVLKPPRRRSKHVSLSGPLDGR-THEKFVMSSKSLKLSGPLDR 180
           +       + E+E+KV++ +  PRR +K    SGPLDGR   E   ++++SLKLSGPLDR
Sbjct: 121 T----RTYKSEKEIKVEKPVLKPRRIAK----SGPLDGRVAQENLTVANRSLKLSGPLDR 180

Query: 181 KERPPLMFP-RSPRTSGPLDGRMSDWALSKSPKLNGPPQGRMMRLIPPSRSPRVSGPLDG 240
             +   MF  RSP  SGP+DGRM                         +RSP++SGPLD 
Sbjct: 181 SMQERAMFTYRSPILSGPIDGRMY-----------------------ANRSPKLSGPLDR 240

Query: 241 RDGSPNICCRCNRERIETDD---DYHSLWVSLFYDMKPT 265
           R  SP +    ++ER+       D  +LW +LF D+KPT
Sbjct: 241 RPPSPRVYADSSKERLSGGGGGFDDQTLWATLFQDLKPT 248

[Close]

BLAST of Lsi06G010680.1 vs. TrEMBL
Match: D7T4Z0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00550 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 117/270 (43.33%), Postives = 156/270 (57.78%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+T L+P  TYEYGL FARN L  +D+  FNH FLQ++GIS+AKHRLEILKLA
Sbjct: 1   MDWFSWLSKTDLEPSLTYEYGLAFARNELQEEDVVHFNHEFLQSMGISVAKHRLEILKLA 60

Query: 61  KSHSHQQTHN--KSLLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPEPPTVE 120
           K  S ++ HN    LL   +K K     C+ KL           F  D+A  SP P +  
Sbjct: 61  KKESGER-HNTLSGLLQVISKAKRSFAKCVTKL----------AFHGDSA-RSPLPISTS 120

Query: 121 EEEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLD--RKERPPLM 180
            +     V  + +P    S+   LSGPLD R H++   +++S  LSGPLD   +ER P +
Sbjct: 121 CQGSWRGVL-LSRPLDATSRSPRLSGPLDRRVHDRSRFTNRSPNLSGPLDGRAQERMPSI 180

Query: 181 FPRSPRTSGPLDGRMSDWALS--KSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPN 240
             RSP  S  +DGR  +   +  +   ++GP  GRM     P+RSPR+SGPL+GR     
Sbjct: 181 ANRSPIVSRAVDGRAQEILRTPYRGRSVSGPQDGRMPEGNRPNRSPRLSGPLEGR----- 240

Query: 241 ICCRCNRERIETDDDYHSLWVSLFYDMKPT 265
                ++E+IE  D Y S+W ++F DMKPT
Sbjct: 241 -AMGLDKEKIEGVDGYDSIWATMFQDMKPT 251

[Close]

BLAST of Lsi06G010680.1 vs. TAIR10
Match: AT2G12462.1 (AT2G12462.1 BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1))

HSP 1 Score: 128.6 bits (322), Expect = 5.5e-30
Identity = 99/285 (34.74%), Postives = 149/285 (52.28%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+T LDP  +YEYGL+FA+  L  +DI  FNH+FL+ +G+++ KHR+EILKL+
Sbjct: 1   MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60

Query: 61  K-------SHSHQQTHNKSLLSAFTKTKNCLRNCLRKLI----------LPTARPEKGLF 120
           K       S++H+    K L+S   K    + N L K +          L   +     +
Sbjct: 61  KRETQALSSYNHRPVSAK-LISVVIKATKSVGNRLNKWLSLGGTAVVEPLKEKQSPPPAY 120

Query: 121 REDAAVISPEPPTVEEEEQEVKVKEVLKPPRRRSKHVSLSGPLD---GRTHEKFVMSSKS 180
           R   A ++     V  E+  V+V+ +   P  + K +  SGPLD   G   +  ++S++S
Sbjct: 121 RT-GAFLTGNNNKVNAEKAVVQVERL---PVIKRKRIVKSGPLDRNHGIQEKMTLVSNRS 180

Query: 181 LKLSGPLDRKERPPLMFP-RSPRTSGPLDGRMSDWALSKSPKLNGPPQGRMMRLIPPSRS 240
           + LSGPLDR  +  L+   RSP  SG LDG +++                  RL      
Sbjct: 181 MNLSGPLDRSVQERLILAYRSPIVSGQLDGNLNE------------------RL------ 240

Query: 241 PRVSGPLDGRDGSPNICCRCNRERIETDDDYHSLWVSLFYDMKPT 265
            R+SGPL GR  SP++    N+     DDD  + W ++F+++KPT
Sbjct: 241 -RLSGPLKGRPPSPSVYVEYNKR----DDD--TRWDAMFHNLKPT 249

[Close]

BLAST of Lsi06G010680.1 vs. TAIR10
Match: AT1G80520.1 (AT1G80520.1 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-18
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 1  MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
          MDWFSWLSRT L+    YEYGL F+ N L  +DI  FNH FLQ++GISIAKHRLEILKLA
Sbjct: 1  MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61 K 62
          +
Sbjct: 61 R 61

[Close]

BLAST of Lsi06G010680.1 vs. TAIR10
Match: AT1G15760.1 (AT1G15760.1 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-17
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 3  WFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLAKS 62
          WFSWLSRT L+P   +EYGL F++N L  +DI  F+H FLQ++GISIAKHRLEILKLA+ 
Sbjct: 5  WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 63 HSHQQTHNKS-----LLSAFTKTKNCLRNCLRKLI 93
                   S     +++A  KT+ CL + +R  I
Sbjct: 65 DRKNSPPLTSRSISRVVTAIKKTRKCLSDHVRAWI 99

[Close]

BLAST of Lsi06G010680.1 vs. NCBI nr
Match: gi|659086414|ref|XP_008443922.1| (PREDICTED: uncharacterized protein LOC103487398 [Cucumis melo])

HSP 1 Score: 428.3 bits (1100), Expect = 9.6e-117
Identity = 221/275 (80.36%), Postives = 235/275 (85.45%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPLHTYEYGLLFARNAL P+DIPRFNHHFLQ IGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSHS-HQQTHNKSLLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPEPPTVEE 120
           KSH+ HQ   N  L+SAF KTK CLRNCLR+LI P+  P+K        +ISPEPP    
Sbjct: 61  KSHTTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPAPDK-------PIISPEPPPSSL 120

Query: 121 EEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRKERPPL---- 180
           +E +VKVKEVLKPPRRRSKHVSLSGPLD RTHEKFVMSSKSLKLSGPLDRKERPP     
Sbjct: 121 DEPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSSKSLKLSGPLDRKERPPPSPSP 180

Query: 181 -----MFPRSPRTSGPLDGRMSDWALS-KSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGR 240
                MFPRSPRTSGPLDGR+SDW LS KSPK+NGPPQGRMMRLIPPSRSPRVSGPLDGR
Sbjct: 181 SPLPPMFPRSPRTSGPLDGRISDWGLSNKSPKVNGPPQGRMMRLIPPSRSPRVSGPLDGR 240

Query: 241 DGSPNICCRCNRERIETDDDYHSLWVSLFYDMKPT 265
           DGSP ICCRCNRER+E++DDYHSLWVSLFYDMKPT
Sbjct: 241 DGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 267

[Close]

BLAST of Lsi06G010680.1 vs. NCBI nr
Match: gi|449458009|ref|XP_004146740.1| (PREDICTED: uncharacterized protein LOC101205285 [Cucumis sativus])

HSP 1 Score: 422.9 bits (1086), Expect = 4.0e-115
Identity = 218/274 (79.56%), Postives = 233/274 (85.04%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGLLFARNAL P+DIPRFNHHFLQ IGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSHSHQQTHNKSLLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPEPPTVEEE 120
           KSH+HQ   N  L+SAF KTK CLRNCLR+LI P+   EK        +ISPEPP    +
Sbjct: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEK-------PIISPEPPPSSLD 120

Query: 121 EQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRKERPPL----- 180
           E +VKVKEVLKPPRRRSKHVSLSGPLD RTHEKFVMSSKSLKLSGPLDRKER P      
Sbjct: 121 EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSSKSLKLSGPLDRKERAPSSPSPS 180

Query: 181 ----MFPRSPRTSGPLDGRMSDWALS-KSPKLNGPPQGRMMRLIPPSRSPRVSGPLDGRD 240
               MF RSPRTSGPLDGR+SDW+LS KSPK+NGPPQGRMMRLIPPSRSPRVSGPLDGRD
Sbjct: 181 PLPPMFTRSPRTSGPLDGRISDWSLSNKSPKMNGPPQGRMMRLIPPSRSPRVSGPLDGRD 240

Query: 241 GSPNICCRCNRERIETDDDYHSLWVSLFYDMKPT 265
           GSP ICCRCNRER+E++DDYHSLWVSLFYDMKPT
Sbjct: 241 GSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 266

[Close]

BLAST of Lsi06G010680.1 vs. NCBI nr
Match: gi|703120232|ref|XP_010102056.1| (hypothetical protein L484_016186 [Morus notabilis])

HSP 1 Score: 190.3 bits (482), Expect = 4.4e-45
Identity = 120/279 (43.01%), Postives = 168/279 (60.22%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+TGLDP   Y+YGL FARN L  +DI  FNH FLQ++GI++AKHRLEILK+A
Sbjct: 1   MDWFSWLSKTGLDPPLIYDYGLAFARNELQYEDIAYFNHEFLQSMGITVAKHRLEILKVA 60

Query: 61  KSHSHQQTHNKS-LLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPE---PPT 120
           K  +     + S L  A +KTK      + K +       K L        S E      
Sbjct: 61  KKENGGNPRSLSRLFLALSKTKKSFGKYISKFVFQDDMSSKDLPDHHYRERSQEHWRGAL 120

Query: 121 VEEEEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSKSLKLSGPLDRKERPPLM 180
           + ++    ++++    P  +++ ++LSGPLD R HE+ + ++KSLKLSGPLD K    LM
Sbjct: 121 LRKQRSGDEMRD--NGPGLKNRALALSGPLDSRVHERLISNTKSLKLSGPLDGKLHERLM 180

Query: 181 FP-RSPRT--SGPLDGR-----MSDWALSKSPKLNGPPQGRM--MRLIPPSRSPRVSGPL 240
           +P RSP+   SGPL+GR           ++SP+L+GP  GR+     +  ++SP++SGPL
Sbjct: 181 YPNRSPKLTGSGPLNGRGPLPERLMITTTRSPRLSGPLDGRVHDRIFVTTTKSPKMSGPL 240

Query: 241 DGRDGSPNICCRCNRERIETDD-DYHSLWVSLFYDMKPT 265
           DGR  SP  C    +E+ + D+ D HSLW +LF+DMKPT
Sbjct: 241 DGRVLSPKFCTPYEKEKADVDEFDDHSLWTTLFHDMKPT 277

[Close]

BLAST of Lsi06G010680.1 vs. NCBI nr
Match: gi|645275645|ref|XP_008242921.1| (PREDICTED: uncharacterized protein LOC103341216 [Prunus mume])

HSP 1 Score: 187.6 bits (475), Expect = 2.8e-44
Identity = 132/288 (45.83%), Postives = 172/288 (59.72%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+TGLDP   YEYGL F+RN L  +D+  F+H FLQ++GIS+AKHRLEILKLA
Sbjct: 2   MDWFSWLSKTGLDPSLIYEYGLAFSRNELQFEDVSYFDHEFLQSMGISVAKHRLEILKLA 61

Query: 61  -KSHSHQQTHNKSL--LS-AFTKTKNCLRNCLRK------LILPTARPEKGLFRED--AA 120
            K  S    H +SL  LS A  +TK C      K      L L  A      +++    A
Sbjct: 62  KKERSGLGGHPRSLSRLSWALIRTKKCFSKYFNKWVFHEDLSLKDAGEGAARYQDHWRGA 121

Query: 121 VISPEPPTVEEEEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVMSSK---SLKLSG 180
           ++     TV  E +E       KP   +++ ++LSGPLDGR  E+ +  +    +LKLSG
Sbjct: 122 LLRRHKATVNGEVKEE------KPVMFKTRSIALSGPLDGRVQERLMAKNNNNGTLKLSG 181

Query: 181 PLDRKERPPLMFP-RSPRTSGPLD--GRMSDWAL---SKSPKLNGPPQGRM-MRLIPPSR 240
           PLD K    LM+  RSPR +GPLD  GR  +  L   ++SPKL+GP +GR   R +  ++
Sbjct: 182 PLDGKVHERLMYTNRSPRLTGPLDVNGRAPERLLVETTRSPKLSGPLEGRTHERFMVSNK 241

Query: 241 SPRVSGPLDGR-DGSPNICCRCNRERIE-TDDDYHSLWVSLFYDMKPT 265
           SPR+SGPLDGR   SPN C    +ER++  D D H LW +LF DMKPT
Sbjct: 242 SPRLSGPLDGRLVVSPNFCTPYEKERVDGIDYDDHPLWTALFQDMKPT 283

[Close]

BLAST of Lsi06G010680.1 vs. NCBI nr
Match: gi|1009125376|ref|XP_015879581.1| (PREDICTED: uncharacterized protein LOC107415710 [Ziziphus jujuba])

HSP 1 Score: 186.0 bits (471), Expect = 8.3e-44
Identity = 121/274 (44.16%), Postives = 166/274 (60.58%), Query Frame = 1


Query: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALNPDDIPRFNHHFLQNIGISIAKHRLEILKLA 60
           MDWFSWLS+T LD  H YEYGL+FARN L  DDI  FNH FLQ++GIS+AKHRLEILKLA
Sbjct: 10  MDWFSWLSKTTLDTSHIYEYGLVFARNELQFDDITYFNHEFLQSMGISVAKHRLEILKLA 69

Query: 61  KSHSHQQTHNKS-LLSAFTKTKNCLRNCLRKLILPTARPEKGLFREDAAVISPEPPTVEE 120
           +  +   T + S L+ A +KT+  L     KL           F + A         +  
Sbjct: 70  RKENGGTTKSLSRLIWAISKTRKSLVKYFSKLAFHDQEMSLKDFPDSAQSREYWKGVLLR 129

Query: 121 EEQEVKVKEVLKPPRRRSKHVSLSGPLDGRTHEKFVM--SSKSLKLSGPLDRKERPPLMF 180
            ++  ++KE    P   ++ ++LSGP+DGR HE+ +   ++++LKLSGPLD K    L++
Sbjct: 130 RQRSEELKE--DRPVLTTRSMALSGPIDGRVHERLMAPNNTRNLKLSGPLDGKMHDRLLY 189

Query: 181 P-RSPRTSGPLDGR-MSDWAL----SKSPKLNGPPQGRMM-RLIPPSRSPRVSGPLDGRD 240
             RSPR +G LDGR +    L    ++SPKL+GP   R   R +  +R+P++SGPLDGR 
Sbjct: 190 TNRSPRFTGTLDGRAIVPQRLMIPNNRSPKLSGPLDYRANDRALSINRNPKLSGPLDGRA 249

Query: 241 GSPNICCRCNRERIETDDDYHSLWVSLFYDMKPT 265
            SP  C    +++ + D D HSLW +LF DMKPT
Sbjct: 250 MSPKFCTPYEKDKGDDDFDDHSLWSALFQDMKPT 281

The following BLAST results are available for this feature:

BLAST of Lsi06G010680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G010680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTT1_CUCSA	2.8e-115	79.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264010 PE=4 SV=1	[more]
W9RH70_9ROSA	3.1e-45	43.01	Uncharacterized protein OS=Morus notabilis GN=L484_016186 PE=4 SV=1	[more]
A0A059CKQ3_EUCGR	1.2e-41	41.99	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00478 PE=4 SV=1	[more]
A0A067F767_CITSI	2.7e-41	42.29	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025779mg PE=4 SV=1	[more]
D7T4Z0_VITVI	2.7e-41	43.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00550 PE=4 SV=...	[more]

BLAST of Lsi06G010680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G12462.1	5.5e-30	34.74	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM...	[more]
AT1G80520.1	3.7e-18	68.85	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G15760.1	1.8e-17	49.47	Sterile alpha motif (SAM) domain-containing protein	[more]

BLAST of Lsi06G010680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086414\|ref\|XP_008443922.1\|	9.6e-117	80.36	PREDICTED: uncharacterized protein LOC103487398 [Cucumis melo]	[more]
gi\|449458009\|ref\|XP_004146740.1\|	4.0e-115	79.56	PREDICTED: uncharacterized protein LOC101205285 [Cucumis sativus]	[more]
gi\|703120232\|ref\|XP_010102056.1\|	4.4e-45	43.01	hypothetical protein L484_016186 [Morus notabilis]	[more]
gi\|645275645\|ref\|XP_008242921.1\|	2.8e-44	45.83	PREDICTED: uncharacterized protein LOC103341216 [Prunus mume]	[more]
gi\|1009125376\|ref\|XP_015879581.1\|	8.3e-44	44.16	PREDICTED: uncharacterized protein LOC107415710 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013761	SAM/pointed_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G010680	Lsi06G010680	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G010680.1.CDS.1	Lsi06G010680.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G010680.1	Lsi06G010680.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013761	Sterile alpha motif/pointed domain	GENE3D	G3DSA:1.10.150.50		coord: 6..70 score: 1.
IPR013761	Sterile alpha motif/pointed domain	unknown	SSF47769	SAM/Pointed domain	coord: 12..67 score: 7.9
None	No IPR available	PANTHER	PTHR33915	FAMILY NOT NAMED	coord: 1..264 score: 3.1
None	No IPR available	PANTHER	PTHR33915:SF3	SUBFAMILY NOT NAMED	coord: 1..264 score: 3.1