Lsi06G010270.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G010270.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 20441209 .. 20441544 (-)
Sequence length336
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCTTACTCTACATTGCCATTTTAGCATCATCCGTAACAACTCGTCTGACGACGGTGGCAGCAACAACGCCTGCTCCTTTGACAACGAAAGATTTCTCTTTATTTCCTTGCATATCATTTGTTCCTGAGGCGATAAAATGTGTGATTGATGTGCTTAAGAATGCAGTAGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTTCATGATTGTTCCTCCGAGTTTCTCAGAGACATTCCCTTTGGAGATATGATTTTGATTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

mRNA sequence

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCTTACTCTACATTGCCATTTTAGCATCATCCGTAACAACTCGTCTGACGACGGTGGCAGCAACAACGCCTGCTCCTTTGACAACGAAAGATTTCTCTTTATTTCCTTGCATATCATTTGTTCCTGAGGCGATAAAATGTGTGATTGATGTGCTTAAGAATGCAGTAGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTTCATGATTGTTCCTCCGAGTTTCTCAGAGACATTCCCTTTGGAGATATGATTTTGATTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

Coding sequence (CDS)

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCTTACTCTACATTGCCATTTTAGCATCATCCGTAACAACTCGTCTGACGACGGTGGCAGCAACAACGCCTGCTCCTTTGACAACGAAAGATTTCTCTTTATTTCCTTGCATATCATTTGTTCCTGAGGCGATAAAATGTGTGATTGATGTGCTTAAGAATGCAGTAGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTTCATGATTGTTCCTCCGAGTTTCTCAGAGACATTCCCTTTGGAGATATGATTTTGATTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

Protein sequence

MATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVIDVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWGVSIS
Homology
[Close]
BLAST of Lsi06G010270.1 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 1 

Query: 1   MATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVI 60
           + T   KL LV +   AI A         +A T P P  T+D S FPC SFVPEA KC+I
Sbjct: 6   LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWGVSIS 112
           DV K+ +A HP+CC+AISKL  CSS F   IP  DMI+IKSVC  WG SIS
Sbjct: 66  DVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of Lsi06G010270.1 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 4   SATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVIDVL 63
           ++ KLP++ L+ IAILA  V TR TT    T    +TKD +   C  F  EA KC+IDV+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTT----TLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 64  KNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWG 108
           KN++ PHPSCC AI KL+DC+ E  +D+P  D  LIK +C LWG
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]
BLAST of Lsi06G010270.1 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 2   ATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFP-CISFVPEAIKCVI 61
           + S  +L +V L+ I ILA SVT R    A +    L  +D S F  C  F+ EA  CV+
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 67

Query: 62  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCAL 106
           DV+K  VA HPSCC+AIS L+DC+ +  + IP  DM +IK +C L
Sbjct: 68  DVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of Lsi06G010270.1 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-22
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 1 

Query: 1   MATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVI 60
           + T   KL LV +   AI A         +A T P P  T+D S FPC SFVPEA KC+I
Sbjct: 6   LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWGVSIS 112
           DV K+ +A HP+CC+AISKL  CSS F   IP  DMI+IKSVC  WG SIS
Sbjct: 66  DVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of Lsi06G010270.1 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-17
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 4   SATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVIDVL 63
           ++ KLP++ L+ IAILA  V TR TT    T    +TKD +   C  F  EA KC+IDV+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTT----TLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 64  KNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWG 108
           KN++ PHPSCC AI KL+DC+ E  +D+P  D  LIK +C LWG
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]
BLAST of Lsi06G010270.1 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 2   ATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFP-CISFVPEAIKCVI 61
           + S  +L +V L+ I ILA SVT R    A +    L  +D S F  C  F+ EA  CV+
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 67

Query: 62  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCAL 106
           DV+K  VA HPSCC+AIS L+DC+ +  + IP  DM +IK +C L
Sbjct: 68  DVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

The following BLAST results are available for this feature:
BLAST of Lsi06G010270.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G010270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYQ3_CUCSA2.0e-2253.15Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA1.9e-1750.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
A0A0A0LTD6_CUCSA1.3e-1044.76Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
BLAST of Lsi06G010270.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G010270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210000|gb|KGN65096.1|2.9e-2253.15hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|2.8e-1750.00hypothetical protein Csa_1G263980 [Cucumis sativus][more]
gi|700210094|gb|KGN65190.1|1.9e-1044.76hypothetical protein Csa_1G263450 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G010270Lsi06G010270gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G010270.1.CDS.1Lsi06G010270.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G010270.1Lsi06G010270.1-proteinpolypeptide