Lsi06G010270 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G010270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 20441209 .. 20441544 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCTTACTCTACATTGCCATTTTAGCATCATCCGTAACAACTCGTCTGACGACGGTGGCAGCAACAACGCCTGCTCCTTTGACAACGAAAGATTTCTCTTTATTTCCTTGCATATCATTTGTTCCTGAGGCGATAAAATGTGTGATTGATGTGCTTAAGAATGCAGTAGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTTCATGATTGTTCCTCCGAGTTTCTCAGAGACATTCCCTTTGGAGATATGATTTTGATTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

mRNA sequence

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCTTACTCTACATTGCCATTTTAGCATCATCCGTAACAACTCGTCTGACGACGGTGGCAGCAACAACGCCTGCTCCTTTGACAACGAAAGATTTCTCTTTATTTCCTTGCATATCATTTGTTCCTGAGGCGATAAAATGTGTGATTGATGTGCTTAAGAATGCAGTAGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTTCATGATTGTTCCTCCGAGTTTCTCAGAGACATTCCCTTTGGAGATATGATTTTGATTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

Coding sequence (CDS)

ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCTTACTCTACATTGCCATTTTAGCATCATCCGTAACAACTCGTCTGACGACGGTGGCAGCAACAACGCCTGCTCCTTTGACAACGAAAGATTTCTCTTTATTTCCTTGCATATCATTTGTTCCTGAGGCGATAAAATGTGTGATTGATGTGCTTAAGAATGCAGTAGCTCCTCATCCTTCTTGTTGCGAAGCTATTTCTAAACTTCATGATTGTTCCTCCGAGTTTCTCAGAGACATTCCCTTTGGAGATATGATTTTGATTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATTTCTTAA

Protein sequence

MATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVIDVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWGVSIS

Homology

[Close]

BLAST of Lsi06G010270 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-22
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 1   MATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVI 60
           + T   KL LV +   AI A         +A T P P  T+D S FPC SFVPEA KC+I
Sbjct: 6   LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWGVSIS 112
           DV K+ +A HP+CC+AISKL  CSS F   IP  DMI+IKSVC  WG SIS
Sbjct: 66  DVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]

BLAST of Lsi06G010270 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 4   SATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVIDVL 63
           ++ KLP++ L+ IAILA  V TR TT    T    +TKD +   C  F  EA KC+IDV+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTT----TLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 64  KNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWG 108
           KN++ PHPSCC AI KL+DC+ E  +D+P  D  LIK +C LWG
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of Lsi06G010270 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 2   ATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFP-CISFVPEAIKCVI 61
           + S  +L +V L+ I ILA SVT R    A +    L  +D S F  C  F+ EA  CV+
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 67

Query: 62  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCAL 106
           DV+K  VA HPSCC+AIS L+DC+ +  + IP  DM +IK +C L
Sbjct: 68  DVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]

BLAST of Lsi06G010270 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-22
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 1   MATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVI 60
           + T   KL LV +   AI A         +A T P P  T+D S FPC SFVPEA KC+I
Sbjct: 6   LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWGVSIS 112
           DV K+ +A HP+CC+AISKL  CSS F   IP  DMI+IKSVC  WG SIS
Sbjct: 66  DVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]

BLAST of Lsi06G010270 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-17
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 4   SATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFPCISFVPEAIKCVIDVL 63
           ++ KLP++ L+ IAILA  V TR TT    T    +TKD +   C  F  EA KC+IDV+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTRTTT----TLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 64  KNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCALWG 108
           KN++ PHPSCC AI KL+DC+ E  +D+P  D  LIK +C LWG
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of Lsi06G010270 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 2   ATSATKLPLVLLLYIAILASSVTTRLTTVAATTPAPLTTKDFSLFP-CISFVPEAIKCVI 61
           + S  +L +V L+ I ILA SVT R    A +    L  +D S F  C  F+ EA  CV+
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 67

Query: 62  DVLKNAVAPHPSCCEAISKLHDCSSEFLRDIPFGDMILIKSVCAL 106
           DV+K  VA HPSCC+AIS L+DC+ +  + IP  DM +IK +C L
Sbjct: 68  DVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

The following BLAST results are available for this feature:

BLAST of Lsi06G010270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G010270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYQ3_CUCSA	2.0e-22	53.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1	[more]
A0A0A0LTE1_CUCSA	1.9e-17	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1	[more]
A0A0A0LTD6_CUCSA	1.3e-10	44.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1	[more]

BLAST of Lsi06G010270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G010270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210000\|gb\|KGN65096.1\|	2.9e-22	53.15	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
gi\|700210099\|gb\|KGN65195.1\|	2.8e-17	50.00	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
gi\|700210094\|gb\|KGN65190.1\|	1.9e-10	44.76	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010270.1	Lsi06G010270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G010270	ClCG06G011830	Watermelon (Charleston Gray)	lsiwcgB373
Lsi06G010270	CsaV3_1G028160	Cucumber (Chinese Long) v3	cuclsiB073

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G010270	Wax gourd	lsiwgoB518
Lsi06G010270	Bottle gourd (USVL1VR-Ls)	lsilsiB057
Lsi06G010270	Cucurbita maxima (Rimu)	cmalsiB031
Lsi06G010270	Cucurbita maxima (Rimu)	cmalsiB147
Lsi06G010270	Cucurbita moschata (Rifu)	cmolsiB019
Lsi06G010270	Cucurbita moschata (Rifu)	cmolsiB131
Lsi06G010270	Cucurbita pepo (Zucchini)	cpelsiB300
Lsi06G010270	Cucurbita pepo (Zucchini)	cpelsiB557
Lsi06G010270	Cucurbita pepo (Zucchini)	cpelsiB565
Lsi06G010270	Cucurbita pepo (Zucchini)	cpelsiB643
Lsi06G010270	Watermelon (Charleston Gray)	lsiwcgB354
Lsi06G010270	Watermelon (Charleston Gray)	lsiwcgB371
Lsi06G010270	Watermelon (97103) v1	lsiwmB405
Lsi06G010270	Watermelon (97103) v1	lsiwmB415
Lsi06G010270	Cucumber (Gy14) v2	cgyblsiB063
Lsi06G010270	Silver-seed gourd	carlsiB115
Lsi06G010270	Silver-seed gourd	carlsiB578