Lsi06G008250.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGAGAAGATCACACAAAACCCAGTTGAACGTGAAGGAGAAGTCTATACACAAAACCCAATCGAACACGAAGGAGAAGACTATGGACAAAACGCAGTCGAACGCAGAGGAGAAGGAAAAAAAAAGAAGCGGAAAAGAAAAATGAAAGAGAAGGTCCACAAGCTCCAGAGATTTGCAAAGAGAAGCTGTAGAGAGAGAACGAAGGAGAAGAATGAAAGAGATGAAGATTTTGAGCGCCCTAATGAAAGAGGGGAGGATTTCGACGGGCGCCAAAATGTTTGTTTCTATAGGGTTTTATAATAAAAGCAATGCTGAAATGCTATAACTATACAATATATATCCTAATAAAAACATCTTACTTTATCATAAATTATTTGTTTTCCTTTCTCTTCTCCAAAATGATTTAGTTTCCTTCTTCTTATTGAAAACAACTTCATTCTCTTATAAATTTTACAAAATTGTATATTTCAATACCAACCAAAATCTTTTTCTCCTTCTACCATCTATTCTTTTTTTCTCTCTTCGGCAACTACAGGTTTAAGTTCAGTATAATAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAAAAAACAAAAATGAGAGAAAAATAATAATAATCAATAGCTTTCCGGCCTATCACAACTATCCCCATTATAATGTTGCCATCAAGTTTTCACAAAGTTTCTGATTTCTTGTATTTGTCTATTAATCTATAGTAATTAAGTAGTGAAGTCTTCATACGTTGATTTTTTATATTTTATTCTTCTTTTTTCTTTTTTTTTTTTTTTGTAAAGAATGAATTTTAATTTACTATTTTTTATAATATTTTTATATTTTTTTTTAATTATATTTAAGAAATATTGTTGATTTCCACTATGGTTAAGGTACGTTACACATACAATAACAAAATAGTTGAGAAAGAGGTCTACGAAGGTGCTTCGATTATTTACGACATGAATAGTAAAAGCGTGAAGCAATCTGAGTCGTCAGAGCCGACAGGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAGCCTCCTGCAATCAACGAAGCTCCACCTAACAACAACAATGAAAATGTGGCGCCAGTGGCCGATGGAGCTCGAGATAGAATTTGGCCAATAGCAGTGATCGAAAATGTAATTGGAGCATGTAGTCGGCCATTTGTGAAGCAATTAACGAAAAGCGACATGTCAGATGGGCTAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATTTGATTCACGGGATTGATGTTATAGTTTTTGATAGTGAAGGGAGACAATACAACATGACGTTCAAGATTTGGTCTTCTAAGCTTTATGTGCTCACGAAAGGTTGGAAGGAGTTTTACCAGACTAATAATTTATTGCAATCTGGTGAGTATGTCACCGTTTGGATGTTCCGACATGTCGTTAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCTTGA ATGAAGGAGAAGATCACACAAAACCCAGTTGAACGTGAAGGAGAAGTCTATACACAAAACCCAATCGAACACGAAGGAGAAGACTATGGACAAAACGCAGTCGAACGCAGAGGAGAAGGAAAAAAAAAGAAGCGGAAAAGAAAAATGAAAGAGAAGGTCCACAAGCTCCAGAGATTTGCAAAGAGAAGCTGTAGAGAGAGAACGAAGGAGAAGAATGAAAGAGATGAAGATTTTGAGCGCCCTAATGAAAGAGGGGAGGATTTCGACGGGCGCCAAAATGTACGTTACACATACAATAACAAAATAGTTGAGAAAGAGGTCTACGAAGGTGCTTCGATTATTTACGACATGAATAGTAAAAGCGTGAAGCAATCTGAGTCGTCAGAGCCGACAGGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAGCCTCCTGCAATCAACGAAGCTCCACCTAACAACAACAATGAAAATGTGGCGCCAGTGGCCGATGGAGCTCGAGATAGAATTTGGCCAATAGCAGTGATCGAAAATGTAATTGGAGCATGTAGTCGGCCATTTGTGAAGCAATTAACGAAAAGCGACATGTCAGATGGGCTAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATTTGATTCACGGGATTGATGTTATAGTTTTTGATAGTGAAGGGAGACAATACAACATGACGTTCAAGATTTGGTCTTCTAAGCTTTATGTGCTCACGAAAGGTTGGAAGGAGTTTTACCAGACTAATAATTTATTGCAATCTGGTGAGTATGTCACCGTTTGGATGTTCCGACATGTCGTTAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCTTGA ATGAAGGAGAAGATCACACAAAACCCAGTTGAACGTGAAGGAGAAGTCTATACACAAAACCCAATCGAACACGAAGGAGAAGACTATGGACAAAACGCAGTCGAACGCAGAGGAGAAGGAAAAAAAAAGAAGCGGAAAAGAAAAATGAAAGAGAAGGTCCACAAGCTCCAGAGATTTGCAAAGAGAAGCTGTAGAGAGAGAACGAAGGAGAAGAATGAAAGAGATGAAGATTTTGAGCGCCCTAATGAAAGAGGGGAGGATTTCGACGGGCGCCAAAATGTACGTTACACATACAATAACAAAATAGTTGAGAAAGAGGTCTACGAAGGTGCTTCGATTATTTACGACATGAATAGTAAAAGCGTGAAGCAATCTGAGTCGTCAGAGCCGACAGGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAGCCTCCTGCAATCAACGAAGCTCCACCTAACAACAACAATGAAAATGTGGCGCCAGTGGCCGATGGAGCTCGAGATAGAATTTGGCCAATAGCAGTGATCGAAAATGTAATTGGAGCATGTAGTCGGCCATTTGTGAAGCAATTAACGAAAAGCGACATGTCAGATGGGCTAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATTTGATTCACGGGATTGATGTTATAGTTTTTGATAGTGAAGGGAGACAATACAACATGACGTTCAAGATTTGGTCTTCTAAGCTTTATGTGCTCACGAAAGGTTGGAAGGAGTTTTACCAGACTAATAATTTATTGCAATCTGGTGAGTATGTCACCGTTTGGATGTTCCGACATGTCGTTAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCTTGA MKEKITQNPVEREGEVYTQNPIEHEGEDYGQNAVERRGEGKKKKRKRKMKEKVHKLQRFAKRSCRERTKEKNERDEDFERPNERGEDFDGRQNVRYTYNNKIVEKEVYEGASIIYDMNSKSVKQSESSEPTGRFKNQFPGSTSTSIVNEQPPAINEAPPNNNNENVAPVADGARDRIWPIAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP
BLAST of Lsi06G008250.1 vs. Swiss-Prot
Match: Y4317_ARATH (Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.0e-18 Identity = 71/225 (31.56%), Postives = 109/225 (48.44%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. Swiss-Prot
Match: Y4316_ARATH (Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana GN=At4g03160 PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.0e-13 Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TrEMBL
Match: A0A0A0L7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073910 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 4.4e-64 Identity = 135/225 (60.00%), Postives = 164/225 (72.89%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TrEMBL
Match: A0A0A0LC65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609250 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 4.8e-42 Identity = 79/125 (63.20%), Postives = 103/125 (82.40%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TrEMBL
Match: A0A061FAT0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_033025 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27 Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TrEMBL
Match: B9N1E3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40760g PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26 Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TrEMBL
Match: M5VSG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023842mg PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 3.1e-25 Identity = 55/125 (44.00%), Postives = 85/125 (68.00%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TAIR10
Match: AT4G03170.1 (AT4G03170.1 AP2/B3-like transcriptional factor family protein) HSP 1 Score: 93.6 bits (231), Expect = 2.3e-19 Identity = 71/225 (31.56%), Postives = 109/225 (48.44%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TAIR10
Match: AT4G03160.1 (AT4G03160.1 BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1)) HSP 1 Score: 77.4 bits (189), Expect = 1.7e-14 Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. TAIR10
Match: AT1G68840.1 (AT1G68840.1 related to ABI3/VP1 2) HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06 Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. NCBI nr
Match: gi|659071538|ref|XP_008460492.1| (PREDICTED: uncharacterized protein LOC103499291 [Cucumis melo]) HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64 Identity = 133/230 (57.83%), Postives = 162/230 (70.43%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. NCBI nr
Match: gi|700200968|gb|KGN56101.1| (hypothetical protein Csa_3G073910 [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 6.4e-64 Identity = 135/225 (60.00%), Postives = 164/225 (72.89%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. NCBI nr
Match: gi|700203164|gb|KGN58297.1| (hypothetical protein Csa_3G609250 [Cucumis sativus]) HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42 Identity = 79/125 (63.20%), Postives = 103/125 (82.40%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. NCBI nr
Match: gi|764517631|ref|XP_011466877.1| (PREDICTED: putative B3 domain-containing protein At4g03170 [Fragaria vesca subsp. vesca]) HSP 1 Score: 136.3 bits (342), Expect = 8.7e-29 Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = 1
BLAST of Lsi06G008250.1 vs. NCBI nr
Match: gi|590612813|ref|XP_007022488.1| (Uncharacterized protein TCM_033025 [Theobroma cacao]) HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27 Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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