Lsi06G008250 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G008250
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionB3 domain-containing protein, putative
Locationchr06 : 17553926 .. 17555975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGAAGATCACACAAAACCCAGTTGAACGTGAAGGAGAAGTCTATACACAAAACCCAATCGAACACGAAGGAGAAGACTATGGACAAAACGCAGTCGAACGCAGAGGAGAAGGAAAAAAAAAGAAGCGGAAAAGAAAAATGAAAGAGAAGGTCCACAAGCTCCAGAGATTTGCAAAGAGAAGCTGTAGAGAGAGAACGAAGGAGAAGAATGAAAGAGATGAAGATTTTGAGCGCCCTAATGAAAGAGGGGAGGATTTCGACGGGCGCCAAAATGTTTGTTTCTATAGGGTTTTATAATAAAAGCAATGCTGAAATGCTATAACTATACAATATATATCCTAATAAAAACATCTTACTTTATCATAAATTATTTGTTTTCCTTTCTCTTCTCCAAAATGATTTAGTTTCCTTCTTCTTATTGAAAACAACTTCATTCTCTTATAAATTTTACAAAATTGTATATTTCAATACCAACCAAAATCTTTTTCTCCTTCTACCATCTATTCTTTTTTTCTCTCTTCGGCAACTACAGGTTTAAGTTCAGTATAATAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAAAAAACAAAAATGAGAGAAAAATAATAATAATCAATAGCTTTCCGGCCTATCACAACTATCCCCATTATAATGTTGCCATCAAGTTTTCACAAAGTTTCTGATTTCTTGTATTTGTCTATTAATCTATAGTAATTAAGTAGTGAAGTCTTCATACGTTGATTTTTTATATTTTATTCTTCTTTTTTCTTTTTTTTTTTTTTTGTAAAGAATGAATTTTAATTTACTATTTTTTATAATATTTTTATATTTTTTTTTAATTATATTTAAGAAATATTGTTGATTTCCACTATGGTTAAGGTACGTTACACATACAATAACAAAATAGTTGAGAAAGAGGTCTACGAAGGTGCTTCGATTATTTACGACATGAATAGTAAAAGCGTGAAGCAATCTGAGTCGTCAGAGCCGACAGGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAGCCTCCTGCAATCAACGAAGCTCCACCTAACAACAACAATGAAAATGTGGCGCCAGTGGCCGATGGAGCTCGAGATAGAATTTGGCCAATAGCAGTGATCGAAAATGTAATTGGAGCATGTAGTCGGCCATTTGTGAAGCAATTAACGAAAAGCGACATGTCAGATGGGCTAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATTTGATTCACGGGATTGATGTTATAGTTTTTGATAGTGAAGGGAGACAATACAACATGACGTTCAAGATTTGGTCTTCTAAGCTTTATGTGCTCACGAAAGGTTGGAAGGAGTTTTACCAGACTAATAATTTATTGCAATCTGGTGAGTATGTCACCGTTTGGATGTTCCGACATGTCGTTAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCTTGA

mRNA sequence

ATGAAGGAGAAGATCACACAAAACCCAGTTGAACGTGAAGGAGAAGTCTATACACAAAACCCAATCGAACACGAAGGAGAAGACTATGGACAAAACGCAGTCGAACGCAGAGGAGAAGGAAAAAAAAAGAAGCGGAAAAGAAAAATGAAAGAGAAGGTCCACAAGCTCCAGAGATTTGCAAAGAGAAGCTGTAGAGAGAGAACGAAGGAGAAGAATGAAAGAGATGAAGATTTTGAGCGCCCTAATGAAAGAGGGGAGGATTTCGACGGGCGCCAAAATGTACGTTACACATACAATAACAAAATAGTTGAGAAAGAGGTCTACGAAGGTGCTTCGATTATTTACGACATGAATAGTAAAAGCGTGAAGCAATCTGAGTCGTCAGAGCCGACAGGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAGCCTCCTGCAATCAACGAAGCTCCACCTAACAACAACAATGAAAATGTGGCGCCAGTGGCCGATGGAGCTCGAGATAGAATTTGGCCAATAGCAGTGATCGAAAATGTAATTGGAGCATGTAGTCGGCCATTTGTGAAGCAATTAACGAAAAGCGACATGTCAGATGGGCTAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATTTGATTCACGGGATTGATGTTATAGTTTTTGATAGTGAAGGGAGACAATACAACATGACGTTCAAGATTTGGTCTTCTAAGCTTTATGTGCTCACGAAAGGTTGGAAGGAGTTTTACCAGACTAATAATTTATTGCAATCTGGTGAGTATGTCACCGTTTGGATGTTCCGACATGTCGTTAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCTTGA

Coding sequence (CDS)

ATGAAGGAGAAGATCACACAAAACCCAGTTGAACGTGAAGGAGAAGTCTATACACAAAACCCAATCGAACACGAAGGAGAAGACTATGGACAAAACGCAGTCGAACGCAGAGGAGAAGGAAAAAAAAAGAAGCGGAAAAGAAAAATGAAAGAGAAGGTCCACAAGCTCCAGAGATTTGCAAAGAGAAGCTGTAGAGAGAGAACGAAGGAGAAGAATGAAAGAGATGAAGATTTTGAGCGCCCTAATGAAAGAGGGGAGGATTTCGACGGGCGCCAAAATGTACGTTACACATACAATAACAAAATAGTTGAGAAAGAGGTCTACGAAGGTGCTTCGATTATTTACGACATGAATAGTAAAAGCGTGAAGCAATCTGAGTCGTCAGAGCCGACAGGTCGTTTCAAAAATCAATTTCCAGGTTCAACTTCTACTTCCATAGTAAACGAGCAGCCTCCTGCAATCAACGAAGCTCCACCTAACAACAACAATGAAAATGTGGCGCCAGTGGCCGATGGAGCTCGAGATAGAATTTGGCCAATAGCAGTGATCGAAAATGTAATTGGAGCATGTAGTCGGCCATTTGTGAAGCAATTAACGAAAAGCGACATGTCAGATGGGCTAGGGCGATTGACACTTCAAAAGGAATTTGTGAATCGTCATTTGGTTCCAATGTTCAATGATGATGAGGATTTGATTCACGGGATTGATGTTATAGTTTTTGATAGTGAAGGGAGACAATACAACATGACGTTCAAGATTTGGTCTTCTAAGCTTTATGTGCTCACGAAAGGTTGGAAGGAGTTTTACCAGACTAATAATTTATTGCAATCTGGTGAGTATGTCACCGTTTGGATGTTCCGACATGTCGTTAATCACAAGCTTTGCTTTGCTATCATTCAAGGAAGGGTTGAAGGGCCTTGA

Protein sequence

MKEKITQNPVEREGEVYTQNPIEHEGEDYGQNAVERRGEGKKKKRKRKMKEKVHKLQRFAKRSCRERTKEKNERDEDFERPNERGEDFDGRQNVRYTYNNKIVEKEVYEGASIIYDMNSKSVKQSESSEPTGRFKNQFPGSTSTSIVNEQPPAINEAPPNNNNENVAPVADGARDRIWPIAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAIIQGRVEGP
Homology
[Close]
BLAST of Lsi06G008250 vs. Swiss-Prot
Match: Y4317_ARATH (Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-18
Identity = 71/225 (31.56%), Postives = 109/225 (48.44%), Query Frame = 1 

Query: 83  ERGEDFDGRQNVRYTYNNKIVEKEVYEGASI-IYDMNSKSVKQS-------ESSEPTGRF 142
           +R ED D   ++    ++++++ E YE AS+ +   +  + KQS       E ++P  RF
Sbjct: 34  DREEDIDDEDDI----DDEVIDDEDYEVASLPLLQESQANQKQSREREEETEKNQPK-RF 93

Query: 143 KNQFPGSTSTSIVNEQPPAINEAPPNNNNENVAPVADGARDRIWPIAVIENVIGACSRPF 202
           K Q     +    +E+   + E       +      D    R++            SRP 
Sbjct: 94  KKQNMMKINIHDFSEETLRLIEVWYEAELDPQDIFGDNEVTRLF------------SRPI 153

Query: 203 VKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIW 262
            KQL  SD+      L L KE V   ++P   D E+ + GIDV V+  +G+   M FK+W
Sbjct: 154 KKQLMSSDVDKDQCMLMLSKEQVKEKMLPFLEDSENPVKGIDVSVYGPDGKVQQMEFKMW 213

Query: 263 SS-KLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAI 299
           +  K  VLT GWK+F +   L  + ++VTVWMFRH+   KLCFAI
Sbjct: 214 NGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]
BLAST of Lsi06G008250 vs. Swiss-Prot
Match: Y4316_ARATH (Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana GN=At4g03160 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-13
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1 

Query: 192 RPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTF 251
           R   +QL  SD+ D   RL L KE V + +  +   ++    G++V V+   G  + M  
Sbjct: 63  RKVAEQLMDSDVKDNQYRLMLGKEPVKKMMDALGKTEKLGTKGLNVSVYGPNGENHKMVL 122

Query: 252 KIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAI 299
           KIW     VLT GWK F ++  L +  +++T+WMFRH    ++CFAI
Sbjct: 123 KIWIKGTPVLTSGWKNFVKSYKLEKHVDFLTIWMFRHKKTREICFAI 169

[Close]
BLAST of Lsi06G008250 vs. TrEMBL
Match: A0A0A0L7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073910 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.4e-64
Identity = 135/225 (60.00%), Postives = 164/225 (72.89%), Query Frame = 1 

Query: 93  NVRYTYNNKIVEKEVYEGASIIYDMN-SKSVKQSESSEPTGRFKNQFPGSTSTSIVNEQP 152
           +V YTYNNKIV ++VY+ + I+YDM  SKSV+  E  EP  RF NQ   STSTS+VNEQ 
Sbjct: 3   DVHYTYNNKIVAEDVYKASLILYDMALSKSVEPFE--EPIDRFNNQL-SSTSTSLVNEQS 62

Query: 153 PAINEAPP------------NNNNENVAPVADGARD--RIWPIAVIENVIGACSRPFVKQ 212
           P +NE  P            N NNENVA      RD  R  P+AVI+N+IG CS PFVKQ
Sbjct: 63  PVVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRDQGRFPPMAVIQNIIGECSPPFVKQ 122

Query: 213 LTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIWSSK 272
           LTK+D++D  GRL L KEFVN +L PMFNDDEDL  GI VIV+D EGR+Y+M FK+W+SK
Sbjct: 123 LTKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLEDGISVIVYDIEGREYDMIFKLWASK 182

Query: 273 LYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAIIQGR 303
           LYVLTK WKEFY+TN+L Q GE+++VWMFRHVV  KLCFAI++G+
Sbjct: 183 LYVLTKSWKEFYKTNDLTQPGEFISVWMFRHVVTQKLCFAIMRGQ 224

[Close]
BLAST of Lsi06G008250 vs. TrEMBL
Match: A0A0A0LC65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609250 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-42
Identity = 79/125 (63.20%), Postives = 103/125 (82.40%), Query Frame = 1 

Query: 180 IAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIV 239
           +AVI+N+IG CS PFVKQL K+D+++  GRL L KEFV R+L+PMFN  E+L +GI V V
Sbjct: 1   MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 60

Query: 240 FDSEGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAII 299
           +DSEGR+Y+M FK W+SKLYVLTK W +FY++NNL + GE+++VWMFRHVVN KLCFAI+
Sbjct: 61  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISVWMFRHVVNRKLCFAIM 120

Query: 300 QGRVE 305
           +G  E
Sbjct: 121 RGDAE 125

[Close]
BLAST of Lsi06G008250 vs. TrEMBL
Match: A0A061FAT0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_033025 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 179 PIAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVI 238
           P+A + ++IG CSRP+ KQLT++D+ D   RL+L K  V +  +P+  + ED+  GI VI
Sbjct: 82  PVATLAHLIGECSRPYSKQLTETDLKDNQIRLSLNKNHVGKSFIPLLKEHEDVNKGIQVI 141

Query: 239 VFDSEGRQYNMTFKIWSSKLYVL-TKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFA 298
            +D EG++Y M F  W+SK+YVL T GWK FY+ ++ L+  + VTVWMFRH   H LCFA
Sbjct: 142 TYDPEGKEYPMKFVFWTSKMYVLTTSGWKRFYK-DHALKESDIVTVWMFRHRHTHNLCFA 201

[Close]
BLAST of Lsi06G008250 vs. TrEMBL
Match: B9N1E3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40760g PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 1 

Query: 183 IENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDS 242
           +  +IG CS+PF KQLT+SD+ D   RL++ K    ++L P+ N+DE+L  GI+V  +D 
Sbjct: 136 LNGIIGRCSKPFEKQLTESDLRDDQSRLSINKADAQKYLYPLLNEDENLAEGINVTTYDP 195

Query: 243 EGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAIIQGR 302
            G+++ M FKIW SK++VL  GWK F+  + L +  ++VT+WMFR +   KLCF I   R
Sbjct: 196 NGKEFEMVFKIWVSKIHVLIGGWKAFFHEHQLRKDQDFVTLWMFRRLDTEKLCFVINWRR 255

Query: 303 VEG 306
           + G
Sbjct: 256 LPG 258

[Close]
BLAST of Lsi06G008250 vs. TrEMBL
Match: M5VSG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023842mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-25
Identity = 55/125 (44.00%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 179 PIAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVI 238
           PI  ++N+I  CS+PF KQLT+SD+ +   RL++ KE V  +++P+  + ++   GIDV 
Sbjct: 100 PIPSLQNLIQDCSKPFEKQLTRSDVKEDQCRLSMNKEDVEYNIMPLLRNGDNFNEGIDVT 159

Query: 239 VFDSEGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAI 298
            +D  G +Y M FKIW++K++VLT GWK F     L+++ ++VT+W+FRHV N  LCFAI
Sbjct: 160 TYDMAGTEYPMVFKIWATKIHVLTGGWKTFCNDLGLVENQDFVTLWVFRHVDNGGLCFAI 219

Query: 299 IQGRV 304
              R+
Sbjct: 220 HSRRL 224

[Close]
BLAST of Lsi06G008250 vs. TAIR10
Match: AT4G03170.1 (AT4G03170.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-19
Identity = 71/225 (31.56%), Postives = 109/225 (48.44%), Query Frame = 1 

Query: 83  ERGEDFDGRQNVRYTYNNKIVEKEVYEGASI-IYDMNSKSVKQS-------ESSEPTGRF 142
           +R ED D   ++    ++++++ E YE AS+ +   +  + KQS       E ++P  RF
Sbjct: 34  DREEDIDDEDDI----DDEVIDDEDYEVASLPLLQESQANQKQSREREEETEKNQPK-RF 93

Query: 143 KNQFPGSTSTSIVNEQPPAINEAPPNNNNENVAPVADGARDRIWPIAVIENVIGACSRPF 202
           K Q     +    +E+   + E       +      D    R++            SRP 
Sbjct: 94  KKQNMMKINIHDFSEETLRLIEVWYEAELDPQDIFGDNEVTRLF------------SRPI 153

Query: 203 VKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIW 262
            KQL  SD+      L L KE V   ++P   D E+ + GIDV V+  +G+   M FK+W
Sbjct: 154 KKQLMSSDVDKDQCMLMLSKEQVKEKMLPFLEDSENPVKGIDVSVYGPDGKVQQMEFKMW 213

Query: 263 SS-KLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAI 299
           +  K  VLT GWK+F +   L  + ++VTVWMFRH+   KLCFAI
Sbjct: 214 NGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]
BLAST of Lsi06G008250 vs. TAIR10
Match: AT4G03160.1 (AT4G03160.1 BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1))

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-14
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1 

Query: 192 RPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTF 251
           R   +QL  SD+ D   RL L KE V + +  +   ++    G++V V+   G  + M  
Sbjct: 63  RKVAEQLMDSDVKDNQYRLMLGKEPVKKMMDALGKTEKLGTKGLNVSVYGPNGENHKMVL 122

Query: 252 KIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAI 299
           KIW     VLT GWK F ++  L +  +++T+WMFRH    ++CFAI
Sbjct: 123 KIWIKGTPVLTSGWKNFVKSYKLEKHVDFLTIWMFRHKKTREICFAI 169

[Close]
BLAST of Lsi06G008250 vs. TAIR10
Match: AT1G68840.1 (AT1G68840.1 related to ABI3/VP1 2)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 194 FVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKI 253
           F K +T SD+   L RL + K+   +H  P+ +    +  G+ +   D  G+ +   +  
Sbjct: 188 FEKAVTPSDVGK-LNRLVIPKQHAEKHF-PLPSPSPAVTKGVLINFEDVNGKVWRFRYSY 247

Query: 254 W-SSKLYVLTKGWKEFYQTNNLLQSGEYVT 283
           W SS+ YVLTKGW  F +  N L++G+ VT
Sbjct: 248 WNSSQSYVLTKGWSRFVKEKN-LRAGDVVT 274

[Close]
BLAST of Lsi06G008250 vs. NCBI nr
Match: gi|659071538|ref|XP_008460492.1| (PREDICTED: uncharacterized protein LOC103499291 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 133/230 (57.83%), Postives = 162/230 (70.43%), Query Frame = 1 

Query: 94  VRYTYNNKIVEKEVYEGASIIYDMNSKSVKQSESSEPTGRFKNQFPGSTSTSIVNEQPPA 153
           V Y YNNKIVEKEVYE    + +M        +SSEP     NQFP STS S+V++QPP 
Sbjct: 4   VGYIYNNKIVEKEVYEACLALCEMK-------KSSEPFEE-PNQFPSSTSISMVDDQPPV 63

Query: 154 INEAPP-----------------NNNNENVAPV-ADGARDRIWPIAVIENVIGACSRPFV 213
           +NE PP                 NNNNENVA V AD    R+ P+ VI+N+IG CS PFV
Sbjct: 64  VNEQPPIVNEHAPVVNEALLNNNNNNNENVAAVVADRDLGRLPPMVVIQNIIGECSPPFV 123

Query: 214 KQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIWS 273
           KQLTK+D++D  GRL L KEFVNR+LVPMFN DE L +GI V V+DSEGR+Y+MTF++W+
Sbjct: 124 KQLTKTDVTDSQGRLALHKEFVNRNLVPMFNGDEILTNGISVTVYDSEGREYDMTFRLWT 183

Query: 274 SKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAIIQGRVEG 306
           SKLYVLTK WK+FY  N L +  E++T+WMFRHVVNHKLCFAI++G VEG
Sbjct: 184 SKLYVLTKSWKKFYHDNGLTRPDEFITLWMFRHVVNHKLCFAIMRGNVEG 225

[Close]
BLAST of Lsi06G008250 vs. NCBI nr
Match: gi|700200968|gb|KGN56101.1| (hypothetical protein Csa_3G073910 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 6.4e-64
Identity = 135/225 (60.00%), Postives = 164/225 (72.89%), Query Frame = 1 

Query: 93  NVRYTYNNKIVEKEVYEGASIIYDMN-SKSVKQSESSEPTGRFKNQFPGSTSTSIVNEQP 152
           +V YTYNNKIV ++VY+ + I+YDM  SKSV+  E  EP  RF NQ   STSTS+VNEQ 
Sbjct: 3   DVHYTYNNKIVAEDVYKASLILYDMALSKSVEPFE--EPIDRFNNQL-SSTSTSLVNEQS 62

Query: 153 PAINEAPP------------NNNNENVAPVADGARD--RIWPIAVIENVIGACSRPFVKQ 212
           P +NE  P            N NNENVA      RD  R  P+AVI+N+IG CS PFVKQ
Sbjct: 63  PVVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRDQGRFPPMAVIQNIIGECSPPFVKQ 122

Query: 213 LTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIVFDSEGRQYNMTFKIWSSK 272
           LTK+D++D  GRL L KEFVN +L PMFNDDEDL  GI VIV+D EGR+Y+M FK+W+SK
Sbjct: 123 LTKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLEDGISVIVYDIEGREYDMIFKLWASK 182

Query: 273 LYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAIIQGR 303
           LYVLTK WKEFY+TN+L Q GE+++VWMFRHVV  KLCFAI++G+
Sbjct: 183 LYVLTKSWKEFYKTNDLTQPGEFISVWMFRHVVTQKLCFAIMRGQ 224

[Close]
BLAST of Lsi06G008250 vs. NCBI nr
Match: gi|700203164|gb|KGN58297.1| (hypothetical protein Csa_3G609250 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42
Identity = 79/125 (63.20%), Postives = 103/125 (82.40%), Query Frame = 1 

Query: 180 IAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVIV 239
           +AVI+N+IG CS PFVKQL K+D+++  GRL L KEFV R+L+PMFN  E+L +GI V V
Sbjct: 1   MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 60

Query: 240 FDSEGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAII 299
           +DSEGR+Y+M FK W+SKLYVLTK W +FY++NNL + GE+++VWMFRHVVN KLCFAI+
Sbjct: 61  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISVWMFRHVVNRKLCFAIM 120

Query: 300 QGRVE 305
           +G  E
Sbjct: 121 RGDAE 125

[Close]
BLAST of Lsi06G008250 vs. NCBI nr
Match: gi|764517631|ref|XP_011466877.1| (PREDICTED: putative B3 domain-containing protein At4g03170 [Fragaria vesca subsp. vesca])

HSP 1 Score: 136.3 bits (342), Expect = 8.7e-29
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = 1 

Query: 179 PIAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVI 238
           P+  +   IG CS PF KQLT SD+ DG  RL + KE+V + L+P+ N++EDL  GIDV+
Sbjct: 107 PVPSLHQFIGICSEPFEKQLTPSDVRDGQSRLAMSKEYVQKRLMPLLNENEDLNEGIDVM 166

Query: 239 VFDSEGRQYNMTFKIWSSKLYVLTKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFAI 298
            +D  G++Y M F+ W SK++VLT GWK F + + L+++  +VTVWMFR++   KLCF I
Sbjct: 167 TYDLAGKEYPMKFRTWVSKIHVLTAGWKAFRKDHKLVENQHWVTVWMFRNIATGKLCFVI 226

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BLAST of Lsi06G008250 vs. NCBI nr
Match: gi|590612813|ref|XP_007022488.1| (Uncharacterized protein TCM_033025 [Theobroma cacao])

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 179 PIAVIENVIGACSRPFVKQLTKSDMSDGLGRLTLQKEFVNRHLVPMFNDDEDLIHGIDVI 238
           P+A + ++IG CSRP+ KQLT++D+ D   RL+L K  V +  +P+  + ED+  GI VI
Sbjct: 82  PVATLAHLIGECSRPYSKQLTETDLKDNQIRLSLNKNHVGKSFIPLLKEHEDVNKGIQVI 141

Query: 239 VFDSEGRQYNMTFKIWSSKLYVL-TKGWKEFYQTNNLLQSGEYVTVWMFRHVVNHKLCFA 298
            +D EG++Y M F  W+SK+YVL T GWK FY+ ++ L+  + VTVWMFRH   H LCFA
Sbjct: 142 TYDPEGKEYPMKFVFWTSKMYVLTTSGWKRFYK-DHALKESDIVTVWMFRHRHTHNLCFA 201

The following BLAST results are available for this feature:
BLAST of Lsi06G008250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4317_ARATH4.0e-1831.56Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g0... [more]
Y4316_ARATH3.0e-1335.51Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana GN=At4g0... [more]
BLAST of Lsi06G008250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7L0_CUCSA4.4e-6460.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073910 PE=4 SV=1[more]
A0A0A0LC65_CUCSA4.8e-4263.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609250 PE=4 SV=1[more]
A0A061FAT0_THECC5.7e-2748.76Uncharacterized protein OS=Theobroma cacao GN=TCM_033025 PE=4 SV=1[more]
B9N1E3_POPTR2.2e-2643.90Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40760g PE=4 SV=1[more]
M5VSG9_PRUPE3.1e-2544.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023842mg PE=4 SV=1[more]
BLAST of Lsi06G008250 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G03170.12.3e-1931.56 AP2/B3-like transcriptional factor family protein[more]
AT4G03160.11.7e-1435.51 BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptio... [more]
AT1G68840.12.2e-0633.33 related to ABI3/VP1 2[more]
BLAST of Lsi06G008250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071538|ref|XP_008460492.1|2.2e-6457.83PREDICTED: uncharacterized protein LOC103499291 [Cucumis melo][more]
gi|700200968|gb|KGN56101.1|6.4e-6460.00hypothetical protein Csa_3G073910 [Cucumis sativus][more]
gi|700203164|gb|KGN58297.1|6.9e-4263.20hypothetical protein Csa_3G609250 [Cucumis sativus][more]
gi|764517631|ref|XP_011466877.1|8.7e-2948.33PREDICTED: putative B3 domain-containing protein At4g03170 [Fragaria vesca subsp... [more]
gi|590612813|ref|XP_007022488.1|8.1e-2748.76Uncharacterized protein TCM_033025 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
IPR003340B3_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G008250.1Lsi06G008250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 194..296
score: 4.4
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 194..302
score: 1.
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 195..302
score: 9
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 193..288
score: 2.7
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 194..292
score: 2.55
NoneNo IPR availablePANTHERPTHR31541FAMILY NOT NAMEDcoord: 148..305
score: 8.1
NoneNo IPR availablePANTHERPTHR31541:SF20SUBFAMILY NOT NAMEDcoord: 148..305
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G008250Cucumber (Chinese Long) v3cuclsiB142
Lsi06G008250Watermelon (97103) v2lsiwmbB358
Lsi06G008250Watermelon (97103) v2lsiwmbB378
Lsi06G008250Wax gourdlsiwgoB474
Lsi06G008250Wax gourdlsiwgoB521
Lsi06G008250Bottle gourd (USVL1VR-Ls)lsilsiB057
Lsi06G008250Cucumber (Gy14) v1cgylsiB165
Lsi06G008250Cucurbita maxima (Rimu)cmalsiB074
Lsi06G008250Cucurbita maxima (Rimu)cmalsiB145
Lsi06G008250Cucurbita maxima (Rimu)cmalsiB182
Lsi06G008250Cucurbita maxima (Rimu)cmalsiB735
Lsi06G008250Cucurbita moschata (Rifu)cmolsiB060
Lsi06G008250Cucurbita moschata (Rifu)cmolsiB129
Lsi06G008250Cucurbita moschata (Rifu)cmolsiB172
Lsi06G008250Cucurbita moschata (Rifu)cmolsiB725
Lsi06G008250Cucurbita pepo (Zucchini)cpelsiB300
Lsi06G008250Cucurbita pepo (Zucchini)cpelsiB557
Lsi06G008250Wild cucumber (PI 183967)cpilsiB130
Lsi06G008250Cucumber (Chinese Long) v2culsiB131
Lsi06G008250Melon (DHL92) v3.5.1lsimeB418
Lsi06G008250Watermelon (Charleston Gray)lsiwcgB354
Lsi06G008250Watermelon (Charleston Gray)lsiwcgB377
Lsi06G008250Watermelon (97103) v1lsiwmB412
Lsi06G008250Watermelon (97103) v1lsiwmB419
Lsi06G008250Melon (DHL92) v3.6.1lsimedB427
Lsi06G008250Melon (DHL92) v3.6.1lsimedB440
Lsi06G008250Silver-seed gourdcarlsiB037
Lsi06G008250Silver-seed gourdcarlsiB115
Lsi06G008250Silver-seed gourdcarlsiB518
Lsi06G008250Silver-seed gourdcarlsiB818