Lsi06G007480.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAATCTTTATGATATTCGAATTATACACAGAACTTCCCTATTTGTAAAAAAAAAGAGAAGAGGTAGGTTTCTAATACCACTCCCCCTTCATTAATTGATACTTTGAAAGGTGTTTCATCTGGAATGAAAGAACAAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTGATAGAGAGTCAAAATTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGACGTATAATTTAGAGACTACGAAACAAAGATTCGAATGATTAGGTGAAGTAGTCTTTTCACGTGCAATATTCTTTTTTTGTAGGGATACAATTCGAAATAGAAAATTTCAAGAAACTTATTTTCTTCCAATAAGTAGATTCGGAATTAAGGTAAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGACCCCTAAAGGCCACCCACAATATACACATAAAAATAAATTAAAGGATCCGTTTTGACATGAAATGGATANAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGGTCTTTGTTTGAGATGAAAAAAAAAACAATTGCAGATTTCTTTTTTTTTTTGGAAAAACAATATTTCTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAAGATGAGACCGTGAGATAGTTATAGTATTTGAATGAAATTAATTAGTAGATTGTGTATCACGTATATACCTTTTTAAATTCATAACTATTTAATAAAAAAGACTGTTGATTAGATCAAAATTTAAAGTAACCGATAATTTTCCTTTATCATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGC AAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGC ATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGC MVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGITEKLDYRESAAKFCVIYGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILGMTNMKIRASIRKICEKCRLIRRRRRIMKRFQNNMIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
BLAST of Lsi06G007480.1 vs. Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 1.9e-60 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. Swiss-Prot
Match: RK14_DAUCA (50S ribosomal protein L14, chloroplastic OS=Daucus carota GN=rpl14 PE=3 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 5.1e-58 Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. Swiss-Prot
Match: RK14_PANGI (50S ribosomal protein L14, chloroplastic OS=Panax ginseng GN=rpl14 PE=3 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 6.7e-58 Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 6.7e-58 Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 6.7e-58 Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TrEMBL
Match: A0A0D2QRQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G111500 PE=3 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 3.8e-68 Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TrEMBL
Match: A0A109WWN7_GYNPE (50S ribosomal protein L14, chloroplastic OS=Gynostemma pentaphyllum GN=rpl14 PE=3 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TrEMBL
Match: A0A0S2IE94_9ROSI (Ribosomal protein L14 OS=Cucurbita argyrosperma subsp. sororia GN=rpl14 PE=3 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TrEMBL
Match: A0A0S2IFA0_CUCMO (Ribosomal protein L14 OS=Cucurbita moschata GN=rpl14 PE=3 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TrEMBL
Match: A0A0S2IG93_CUCPE (Ribosomal protein L14 OS=Cucurbita pepo subsp. ovifera GN=rpl14 PE=3 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TAIR10
Match: ATCG00780.1 (ATCG00780.1 ribosomal protein L14) HSP 1 Score: 223.8 bits (569), Expect = 1.9e-58 Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TAIR10
Match: ATCG00770.1 (ATCG00770.1 ribosomal protein S8) HSP 1 Score: 168.3 bits (425), Expect = 9.4e-42 Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TAIR10
Match: AT5G46160.1 (AT5G46160.1 Ribosomal protein L14p/L23e family protein) HSP 1 Score: 93.6 bits (231), Expect = 2.9e-19 Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein) HSP 1 Score: 70.1 bits (170), Expect = 3.5e-12 Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein) HSP 1 Score: 70.1 bits (170), Expect = 3.5e-12 Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. NCBI nr
Match: gi|763752238|gb|KJB19626.1| (hypothetical protein B456_003G111500 [Gossypium raimondii]) HSP 1 Score: 266.9 bits (681), Expect = 5.5e-68 Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. NCBI nr
Match: gi|68164840|ref|YP_247636.1| (ribosomal protein L14 [Cucumis sativus]) HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. NCBI nr
Match: gi|817527840|ref|YP_009136515.1| (ribosomal protein L14 (chloroplast) [Prunus padus]) HSP 1 Score: 229.6 bits (584), Expect = 9.7e-57 Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. NCBI nr
Match: gi|317046209|ref|YP_004072498.1| (ribosomal protein L14 [Corynocarpus laevigata]) HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56 Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1
BLAST of Lsi06G007480.1 vs. NCBI nr
Match: gi|313183858|ref|YP_004021701.1| (ribosomal protein L14 [Prunus persica]) HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56 Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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