Lsi06G007480 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L14, chloroplastic
Location	chr06 : 13721021 .. 13723060 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAATCTTTATGATATTCGAATTATACACAGAACTTCCCTATTTGTAAAAAAAAAGAGAAGAGGTAGGTTTCTAATACCACTCCCCCTTCATTAATTGATACTTTGAAAGGTGTTTCATCTGGAATGAAAGAACAAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTGATAGAGAGTCAAAATTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGACGTATAATTTAGAGACTACGAAACAAAGATTCGAATGATTAGGTGAAGTAGTCTTTTCACGTGCAATATTCTTTTTTTGTAGGGATACAATTCGAAATAGAAAATTTCAAGAAACTTATTTTCTTCCAATAAGTAGATTCGGAATTAAGGTAAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGACCCCTAAAGGCCACCCACAATATACACATAAAAATAAATTAAAGGATCCGTTTTGACATGAAATGGATANAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGGTCTTTGTTTGAGATGAAAAAAAAAACAATTGCAGATTTCTTTTTTTTTTTGGAAAAACAATATTTCTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAAGATGAGACCGTGAGATAGTTATAGTATTTGAATGAAATTAATTAGTAGATTGTGTATCACGTATATACCTTTTTAAATTCATAACTATTTAATAAAAAAGACTGTTGATTAGATCAAAATTTAAAGTAACCGATAATTTTCCTTTATCATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGC

mRNA sequence

AAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGC

Coding sequence (CDS)

ATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTCGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGC

Protein sequence

MVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGITEKLDYRESAAKFCVIYGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILGMTNMKIRASIRKICEKCRLIRRRRRIMKRFQNNMIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Homology

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BLAST of Lsi06G007480 vs. Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.9e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. Swiss-Prot
Match: RK14_DAUCA (50S ribosomal protein L14, chloroplastic OS=Daucus carota GN=rpl14 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.1e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPN PL RSEV+RA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLARSEVVRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Lsi06G007480 vs. Swiss-Prot
Match: RK14_PANGI (50S ribosomal protein L14, chloroplastic OS=Panax ginseng GN=rpl14 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.7e-58
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPN PL RSEV+RA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLARSEVVRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+FGAIARELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Lsi06G007480 vs. Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.7e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPN PLERSEV+RA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Lsi06G007480 vs. Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.7e-58
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI RELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIVSLAPE 120

[Close]

BLAST of Lsi06G007480 vs. TrEMBL
Match: A0A0D2QRQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G111500 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.8e-68
Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 1


Query: 224 LERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNF 283
           +E SEVIRAVI+R  KELKR+N MIIRYDDN AVVIDQEGNPKGTRIFG IARELRQLNF
Sbjct: 1   MEISEVIRAVIIR--KELKRDNEMIIRYDDNVAVVIDQEGNPKGTRIFGVIARELRQLNF 60

Query: 284 TKIISLAPEDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRES 343
           TKI+SLA +D IA+IITSI N DMNRKG ++I STNITENIVK+LLRE FI NVRKH+E 
Sbjct: 61  TKIVSLALKDIIADIITSIGNVDMNRKGTIQIGSTNITENIVKMLLRESFINNVRKHQER 120

Query: 344 NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG 394
           NK F VLTLRHRRNRKGPY+TILNL+RISR GLRIYSNYQQIPRILGGMG
Sbjct: 121 NKYFLVLTLRHRRNRKGPYRTILNLRRISRLGLRIYSNYQQIPRILGGMG 168

[Close]

BLAST of Lsi06G007480 vs. TrEMBL
Match: A0A109WWN7_GYNPE (50S ribosomal protein L14, chloroplastic OS=Gynostemma pentaphyllum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. TrEMBL
Match: A0A0S2IE94_9ROSI (Ribosomal protein L14 OS=Cucurbita argyrosperma subsp. sororia GN=rpl14 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. TrEMBL
Match: A0A0S2IFA0_CUCMO (Ribosomal protein L14 OS=Cucurbita moschata GN=rpl14 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. TrEMBL
Match: A0A0S2IG93_CUCPE (Ribosomal protein L14 OS=Cucurbita pepo subsp. ovifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. TAIR10
Match: ATCG00780.1 (ATCG00780.1 ribosomal protein L14)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-58
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+A+PNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR NG IIRYDDNAAVVIDQEGNPKGTR+FGAI RELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPE 120

[Close]

BLAST of Lsi06G007480 vs. TAIR10
Match: ATCG00770.1 (ATCG00770.1 ribosomal protein S8)

HSP 1 Score: 168.3 bits (425), Expect = 9.4e-42
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1


Query: 292 EDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLT 351
           +DTIA+IITSIRNADMNRKG VRI STNITE+IVKILLREGFIENVRKHRE+N+ F +LT
Sbjct: 3   KDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLILT 62

Query: 352 LRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG 394
           LRHRRN+K  YKTILNLKRISRPGLRIYSN Q+IPRILGG+G
Sbjct: 63  LRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIG 104

[Close]

BLAST of Lsi06G007480 vs. TAIR10
Match: AT5G46160.1 (AT5G46160.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-19
Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 1


Query: 170 QNNMIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEV 229
           +   IQ  T+L V DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V
Sbjct: 44  RRTFIQMGTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAV 103

Query: 230 IRAVIVRTCKELKRENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGAIARELRQLN 289
           +  V+VR   +  R +G  +R+DDNA V++D        +  P GTR+FG +  ELR+  
Sbjct: 104 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKK 163

Query: 290 FTKIISLA 291
             KI++LA
Sbjct: 164 HLKILALA 169

[Close]

BLAST of Lsi06G007480 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 180 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKKAVPNTPLERSEVIRAVIV 239
           +N ADN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIV
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 240 RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 282
           R  K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128

[Close]

BLAST of Lsi06G007480 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 180 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKKAVPNTPLERSEVIRAVIV 239
           +N ADN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIV
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 240 RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 282
           R  K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128

[Close]

BLAST of Lsi06G007480 vs. NCBI nr
Match: gi|763752238|gb|KJB19626.1| (hypothetical protein B456_003G111500 [Gossypium raimondii])

HSP 1 Score: 266.9 bits (681), Expect = 5.5e-68
Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 1


Query: 224 LERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNF 283
           +E SEVIRAVI+R  KELKR+N MIIRYDDN AVVIDQEGNPKGTRIFG IARELRQLNF
Sbjct: 1   MEISEVIRAVIIR--KELKRDNEMIIRYDDNVAVVIDQEGNPKGTRIFGVIARELRQLNF 60

Query: 284 TKIISLAPEDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRES 343
           TKI+SLA +D IA+IITSI N DMNRKG ++I STNITENIVK+LLRE FI NVRKH+E 
Sbjct: 61  TKIVSLALKDIIADIITSIGNVDMNRKGTIQIGSTNITENIVKMLLRESFINNVRKHQER 120

Query: 344 NKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG 394
           NK F VLTLRHRRNRKGPY+TILNL+RISR GLRIYSNYQQIPRILGGMG
Sbjct: 121 NKYFLVLTLRHRRNRKGPYRTILNLRRISRLGLRIYSNYQQIPRILGGMG 168

[Close]

BLAST of Lsi06G007480 vs. NCBI nr
Match: gi|68164840|ref|YP_247636.1| (ribosomal protein L14 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. NCBI nr
Match: gi|817527840|ref|YP_009136515.1| (ribosomal protein L14 (chloroplast) [Prunus padus])

HSP 1 Score: 229.6 bits (584), Expect = 9.7e-57
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Lsi06G007480 vs. NCBI nr
Match: gi|317046209|ref|YP_004072498.1| (ribosomal protein L14 [Corynocarpus laevigata])

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQ+ LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRA
Sbjct: 1   MIQPQSHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 120

[Close]

BLAST of Lsi06G007480 vs. NCBI nr
Match: gi|313183858|ref|YP_004021701.1| (ribosomal protein L14 [Prunus persica])

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 173 MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 232
           MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 233 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE 292
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKI+SLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPE 120

The following BLAST results are available for this feature:

BLAST of Lsi06G007480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK14_CUCSA	1.9e-60	100.00	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1	[more]
RK14_DAUCA	5.1e-58	95.00	50S ribosomal protein L14, chloroplastic OS=Daucus carota GN=rpl14 PE=3 SV=1	[more]
RK14_PANGI	6.7e-58	94.17	50S ribosomal protein L14, chloroplastic OS=Panax ginseng GN=rpl14 PE=3 SV=1	[more]
RK14_COFAR	6.7e-58	95.00	50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1	[more]
RK14_CARPA	6.7e-58	95.83	50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1	[more]

BLAST of Lsi06G007480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2QRQ0_GOSRA	3.8e-68	82.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G111500 PE=3 SV=1	[more]
A0A109WWN7_GYNPE	2.1e-58	100.00	50S ribosomal protein L14, chloroplastic OS=Gynostemma pentaphyllum GN=rpl14 PE=...	[more]
A0A0S2IE94_9ROSI	2.1e-58	100.00	Ribosomal protein L14 OS=Cucurbita argyrosperma subsp. sororia GN=rpl14 PE=3 SV=...	[more]
A0A0S2IFA0_CUCMO	2.1e-58	100.00	Ribosomal protein L14 OS=Cucurbita moschata GN=rpl14 PE=3 SV=1	[more]
A0A0S2IG93_CUCPE	2.1e-58	100.00	Ribosomal protein L14 OS=Cucurbita pepo subsp. ovifera GN=rpl14 PE=3 SV=1	[more]

BLAST of Lsi06G007480 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00780.1	1.9e-58	93.33	ATCG00780.1 ribosomal protein L14	[more]
ATCG00770.1	9.4e-42	84.31	ATCG00770.1 ribosomal protein S8	[more]
AT5G46160.1	2.9e-19	38.28	Ribosomal protein L14p/L23e family protein	[more]
AT1G04480.1	3.5e-12	36.79	Ribosomal protein L14p/L23e family protein	[more]
AT2G33370.1	3.5e-12	36.79	Ribosomal protein L14p/L23e family protein	[more]

BLAST of Lsi06G007480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763752238\|gb\|KJB19626.1\|	5.5e-68	82.35	hypothetical protein B456_003G111500 [Gossypium raimondii]	[more]
gi\|68164840\|ref\|YP_247636.1\|	3.0e-58	100.00	ribosomal protein L14 [Cucumis sativus]	[more]
gi\|817527840\|ref\|YP_009136515.1\|	9.7e-57	96.67	ribosomal protein L14 (chloroplast) [Prunus padus]	[more]
gi\|317046209\|ref\|YP_004072498.1\|	1.7e-56	97.50	ribosomal protein L14 [Corynocarpus laevigata]	[more]
gi\|313183858\|ref\|YP_004021701.1\|	1.7e-56	96.67	ribosomal protein L14 [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR019972	Ribosomal_L14P_CS
IPR012340	NA-bd_OB-fold
IPR006196	RNA-binding_domain_S1_IF1
IPR005745	Ribosomal_L14P_bac-type
IPR000630	Ribosomal_S8
IPR000473	Ribosomal_L36
IPR000218	Ribosomal_L14P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007480.1	Lsi06G007480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	GENE3D	G3DSA:2.40.150.20		coord: 170..292 score: 1.3
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 173..299 score: 25
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 173..296 score: 7.0
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 173..292 score: 5.7
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 173..294 score: 1.3
IPR000218	Ribosomal protein L14P	unknown	SSF50193	Ribosomal protein L14	coord: 173..292 score: 1.16
IPR000473	Ribosomal protein L36	TIGRFAMs	TIGR01022	TIGR01022	coord: 143..166 score: 6.
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 2..83 score: 1.0E-15coord: 293..393 score: 3.7
IPR000630	Ribosomal protein S8	unknown	SSF56047	Ribosomal protein S8	coord: 2..83 score: 1.31E-18coord: 293..393 score: 2.49
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAMs	TIGR01067	TIGR01067	coord: 173..292 score: 3.8
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 99..163 score: 9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 97..148 score: 6.8
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 96..138 score: 3.7
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 232..258 scor
None	No IPR available	GENE3D	G3DSA:3.30.1370.30		coord: 293..360 score: 1.2E-23coord: 2..49 score: 4.3
None	No IPR available	GENE3D	G3DSA:3.30.1490.10		coord: 367..393 score: 1.0E-7coord: 56..83 score: 8.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007480	Melon (DHL92) v3.6.1	lsimedB432
Lsi06G007480	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007480	Silver-seed gourd	carlsiB251
Lsi06G007480	Silver-seed gourd	carlsiB830
Lsi06G007480	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007480	Cucumber (Chinese Long) v3	cuclsiB090
Lsi06G007480	Watermelon (97103) v2	lsiwmbB362
Lsi06G007480	Wax gourd	lsiwgoB521
Lsi06G007480	Cucumber (Gy14) v1	cgylsiB640
Lsi06G007480	Cucurbita maxima (Rimu)	cmalsiB078
Lsi06G007480	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007480	Cucurbita moschata (Rifu)	cmolsiB064
Lsi06G007480	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007480	Cucurbita pepo (Zucchini)	cpelsiB304
Lsi06G007480	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007480	Wild cucumber (PI 183967)	cpilsiB080
Lsi06G007480	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007480	Cucumber (Chinese Long) v2	culsiB082
Lsi06G007480	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007480	Melon (DHL92) v3.5.1	lsimeB410
Lsi06G007480	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007480	Watermelon (97103) v1	lsiwmB391
Lsi06G007480	Watermelon (97103) v1	lsiwmB398
Lsi06G007480	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007480	Cucumber (Gy14) v2	cgyblsiB076