Lsi06G006230.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006230.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein TIC 214
Location	chr06 : 8895862 .. 8898752 (-)
Sequence length	837

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGTTACTTTCAAGAAGTCTTCTATGTTCCTGAGAGTTTCTAGCCCGTATGGAGTGATCTCCCCAACCCGAACCTTCGAAACGTCCTTTGGACATAATGCACAAAGAAGGAACAAGAATCCCTGCACAAACGAAACATGAATGTGTGCACTCAATTAAGTGAGCAGATTTTCAATTAACGATTGGCAACAAACCAGCATGCAAAGCATAACTTATAGTAGCCAAGTACTTTTAAGCATCAGATATGCTTTCATGGTCTTACTCGTTTAATTCTTGTGAAAGATATAACAAACTTTTTCGAACTATTGCAACATATTCATTGGAGGCCAAAAATATATATATACATGCAACTAAAACCAGTTAGAGAACGAAATAACAACTAAAATAATATGGGGGTGTGGAGTTGACTTGCATTGGGTTAAGAAATACTTTAAGCCCAAGTTTCATAGAGGTAACACTTTAGTTCTTGAACTTCCATTTGTAACTATTTAGTTCTTAACTTCCTATTAGTTTCAAATTTGTAACAATGTCGTCTCTATACTTTCAAATTTATAAAATTTAGTCCCTTCCATTATAAATTTCATCAAAATAATGTGTACTACGTAACAATTTAGTTTTATAGCTAATAAACAAATTCGATCCCTAATCAATTTACCAATCTACATAGTAAGAAATTTCATTAAATCTTAATGATATAAAAAGACCAGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTATGCGCCGACTAAATCATTATAAAAGGTAAGTAATAGACTAAATTGTTAAAAAATTGAAAATATAGGGACTAAATCATTACAAACTTAATACAAAGGAACTAAAATATTTTTTTCCATGAAAGTTCAGGGATATAAAGTGTTTTTTTGCTACCCATTTCACTATGTTTGTTGGCCACTAATCCATGGAGAGGTTTTGCCCACCCTAAGGCCAGCTCCACAAGATCAAGCTTTAAGTTAAAAAGCTTATGAAAACTACGGCCAATTAGAGATTAATATTTTATTCAGCCTGGTTGCATGCTTCATCTGGAATTAGAACGAACCCAAAAGAACTTGGGAGGTGAAGGGACAAATTTTAAGCCCCTACATGTATGTTCATTACCATTACTATCAAACTTTTTTAAAAGAGAGAAAAAATGTAATCACACAAAATGGCTCTGTAAATCTATAGAAAAAAGATGAACAGATTCCTATCAAGATGTGAAAAAACTTGTTTTTGGTTCAATCATAGCATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAAACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATAGTATGACAGTAAATACTAGTTTCAGTTTCTTTCAGCTATTCCCTATGGGTGTTCACTAATATTACAGGATAGATACTTTGAAACTAACAGCGAAGAGGTTCCATGATAATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGTAAAGAAACTCAAATGACAAAGAAAGCAAACTGAAATCGAGGTGAATCAGAACAAGAACTTATTTGTTGGAGAATGCTAACCTGGTGCGTGGAGTCAACTACACCACCTTTCTTTATGTCAGTAAGCAGAGCATAAGCCATATCTTCACCAACGTCTTCAGGATTTGGAAGCTCTTGCTTCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCAGGTGAACTGCCATTGAAAACCATATTCTTTTAAGACATAAACACAAGGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCAGGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

mRNA sequence

ATGAAACGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGACATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAAACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATACGAAGAGGTTCCATGATAATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGATTTGGAAGCTCTTGCTTCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCAGGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCAGGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

Coding sequence (CDS)

ATGAAACGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGACATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAAACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATACGAAGAGGTTCCATGATAATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGATTTGGAAGCTCTTGCTTCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCAGGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCAGGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

Protein sequence

MKRRIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRHRRSPPMSYRRRGIKPKKVAYAGVQTRAIGQWKTYSLTPGLPRIFNIMNTKTFIPINLSITDIIRRGSMIIIQINKANKKLLDNKDFNSVKKFKHLVSKVRFGSSCFSSSNSVVSSAYPYETVVSTDIKQSSVVSATSEMPNPGIQGLNFNGVNSKEKENVLSSSRSLSMISTYMHIWKQAIKHSTSCSYHSMLKLRRHSS

Homology

[Close]

BLAST of Lsi06G006230.1 vs. Swiss-Prot
Match: TI214_VITVI (Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-24
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKK+KET ETEE GESEEETDVEIE TSETKGTKQEQE STEED SPSLFSEE
Sbjct: 239 RIPSPILTKKMKETSETEERGESEEETDVEIERTSETKGTKQEQERSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230.1 vs. Swiss-Prot
Match: TI214_DRIGR (Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.5e-23
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEED  PS  SEE
Sbjct: 236 RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQEGSTEED--PSFCSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDK+DETEEIR
Sbjct: 296 KEDPDKLDETEEIR 307

[Close]

BLAST of Lsi06G006230.1 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           R+P+PIVTKKLKET +TEE GESEEE DVEIETTSETKGTKQEQE STEED SPSL SEE
Sbjct: 236 RMPAPIVTKKLKETSKTEERGESEEERDVEIETTSETKGTKQEQERSTEEDPSPSLCSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 296 KEDPDKIDETEEIR 309

[Close]

BLAST of Lsi06G006230.1 vs. Swiss-Prot
Match: TI214_CUCSA (Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI  K+  +T ET ET ESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 236 RIPSPIPLKETSKTSETAETEESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 296 KEDPDKIDETEEIR 309

[Close]

BLAST of Lsi06G006230.1 vs. Swiss-Prot
Match: TI214_CHLSC (Protein TIC 214 OS=Chloranthus spicatus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPIVTKKLKET ETEE GESEEETDVEIETTSET+GT++EQEGSTEED  PSL SEE
Sbjct: 236 RIPSPIVTKKLKETSETEEGGESEEETDVEIETTSETRGTQKEQEGSTEED--PSLCSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 296 KEDPDKIDETEEIR 307

[Close]

BLAST of Lsi06G006230.1 vs. TrEMBL
Match: G3ETV7_CUCME (Hypothetical chloroplast RF19 OS=Cucumis melo subsp. melo GN=ycf1 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230.1 vs. TrEMBL
Match: G3ETU5_CUCME (Hypothetical chloroplast RF19-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230.1 vs. TrEMBL
Match: G0YDP3_STACO (Hypothetical chloroplast RF1 (Fragment) OS=Staphylea colchica GN=ycf1 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETEE GESEEETD+EIETTSET+GTKQEQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPILTKKLKETSETEERGESEEETDIEIETTSETRGTKQEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230.1 vs. TrEMBL
Match: G0YDR4_HEUSA (Hypothetical chloroplast RF1 (Fragment) OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230.1 vs. TrEMBL
Match: D3WEH2_HEUSA (Putative RF1 protein OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230.1 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 43/74 (58.11%), Postives = 44/74 (59.46%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI TKKLK                     TSET GTKQ+QE STEE   PSLFSEE
Sbjct: 242 RIPSPIFTKKLKG--------------------TSETGGTKQDQEVSTEEAPFPSLFSEE 295

Query: 64  KEDPDKIDETEEIR 78
            ED DKIDE EEIR
Sbjct: 302 GEDLDKIDEMEEIR 295

[Close]

BLAST of Lsi06G006230.1 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 43/74 (58.11%), Postives = 44/74 (59.46%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI TKKLK                     TSET GTKQ+QE STEE   PSLFSEE
Sbjct: 242 RIPSPIFTKKLKG--------------------TSETGGTKQDQEVSTEEAPFPSLFSEE 295

Query: 64  KEDPDKIDETEEIR 78
            ED DKIDE EEIR
Sbjct: 302 GEDLDKIDEMEEIR 295

[Close]

BLAST of Lsi06G006230.1 vs. NCBI nr
Match: gi|346578252|ref|YP_004841843.1| (hypothetical chloroplast RF19 [Cucumis melo subsp. melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.9e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230.1 vs. NCBI nr
Match: gi|346578240|ref|YP_004841831.1| (hypothetical chloroplast RF19-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.9e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230.1 vs. NCBI nr
Match: gi|340807120|gb|AEK71720.1| (hypothetical chloroplast RF1 [Staphylea colchica])

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETEE GESEEETD+EIETTSET+GTKQEQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPILTKKLKETSETEERGESEEETDIEIETTSETRGTKQEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230.1 vs. NCBI nr
Match: gi|290489068|gb|ADD30918.1| (putative RF1 protein (chloroplast) [Heuchera sanguinea])

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230.1 vs. NCBI nr
Match: gi|924443806|gb|ALB78336.1| (hypothetical chloroplast RF1 (chloroplast) [Heuchera parviflora var. saurensis])

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

The following BLAST results are available for this feature:

BLAST of Lsi06G006230.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_VITVI	4.5e-24	90.54	Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1	[more]
TI214_DRIGR	6.5e-23	90.54	Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	1.4e-22	87.84	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_CUCSA	1.4e-22	87.84	Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2	[more]
TI214_CHLSC	3.2e-22	89.19	Protein TIC 214 OS=Chloranthus spicatus GN=TIC214 PE=3 SV=1	[more]

BLAST of Lsi06G006230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
G3ETV7_CUCME	4.1e-24	94.59	Hypothetical chloroplast RF19 OS=Cucumis melo subsp. melo GN=ycf1 PE=4 SV=1	[more]
G3ETU5_CUCME	4.1e-24	94.59	Hypothetical chloroplast RF19-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
G0YDP3_STACO	2.0e-23	91.89	Hypothetical chloroplast RF1 (Fragment) OS=Staphylea colchica GN=ycf1 PE=4 SV=1	[more]
G0YDR4_HEUSA	2.6e-23	93.24	Hypothetical chloroplast RF1 (Fragment) OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1	[more]
D3WEH2_HEUSA	2.6e-23	93.24	Putative RF1 protein OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1	[more]

BLAST of Lsi06G006230.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	2.8e-08	58.11	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	2.8e-08	58.11	ATCG01000.1 Ycf1 protein	[more]

BLAST of Lsi06G006230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|346578252\|ref\|YP_004841843.1\|	5.9e-24	94.59	hypothetical chloroplast RF19 [Cucumis melo subsp. melo]	[more]
gi\|346578240\|ref\|YP_004841831.1\|	5.9e-24	94.59	hypothetical chloroplast RF19-like protein [Cucumis melo subsp. melo]	[more]
gi\|340807120\|gb\|AEK71720.1\|	2.9e-23	91.89	hypothetical chloroplast RF1 [Staphylea colchica]	[more]
gi\|290489068\|gb\|ADD30918.1\|	3.8e-23	93.24	putative RF1 protein (chloroplast) [Heuchera sanguinea]	[more]
gi\|924443806\|gb\|ALB78336.1\|	3.8e-23	93.24	hypothetical chloroplast RF1 (chloroplast) [Heuchera parviflora var. saurensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G006230	Lsi06G006230	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G006230.1	Lsi06G006230.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G006230.1.CDS.6	Lsi06G006230.1.CDS.6	CDS
Lsi06G006230.1.CDS.5	Lsi06G006230.1.CDS.5	CDS
Lsi06G006230.1.CDS.4	Lsi06G006230.1.CDS.4	CDS
Lsi06G006230.1.CDS.3	Lsi06G006230.1.CDS.3	CDS
Lsi06G006230.1.CDS.2	Lsi06G006230.1.CDS.2	CDS
Lsi06G006230.1.CDS.1	Lsi06G006230.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 4..78 score: 4.3
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 4..77 score: 3.6
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 4..77 score: 3.6