Lsi06G006230 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein TIC 214
Location	chr06 : 8895862 .. 8898752 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGTTACTTTCAAGAAGTCTTCTATGTTCCTGAGAGTTTCTAGCCCGTATGGAGTGATCTCCCCAACCCGAACCTTCGAAACGTCCTTTGGACATAATGCACAAAGAAGGAACAAGAATCCCTGCACAAACGAAACATGAATGTGTGCACTCAATTAAGTGAGCAGATTTTCAATTAACGATTGGCAACAAACCAGCATGCAAAGCATAACTTATAGTAGCCAAGTACTTTTAAGCATCAGATATGCTTTCATGGTCTTACTCGTTTAATTCTTGTGAAAGATATAACAAACTTTTTCGAACTATTGCAACATATTCATTGGAGGCCAAAAATATATATATACATGCAACTAAAACCAGTTAGAGAACGAAATAACAACTAAAATAATATGGGGGTGTGGAGTTGACTTGCATTGGGTTAAGAAATACTTTAAGCCCAAGTTTCATAGAGGTAACACTTTAGTTCTTGAACTTCCATTTGTAACTATTTAGTTCTTAACTTCCTATTAGTTTCAAATTTGTAACAATGTCGTCTCTATACTTTCAAATTTATAAAATTTAGTCCCTTCCATTATAAATTTCATCAAAATAATGTGTACTACGTAACAATTTAGTTTTATAGCTAATAAACAAATTCGATCCCTAATCAATTTACCAATCTACATAGTAAGAAATTTCATTAAATCTTAATGATATAAAAAGACCAGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTATGCGCCGACTAAATCATTATAAAAGGTAAGTAATAGACTAAATTGTTAAAAAATTGAAAATATAGGGACTAAATCATTACAAACTTAATACAAAGGAACTAAAATATTTTTTTCCATGAAAGTTCAGGGATATAAAGTGTTTTTTTGCTACCCATTTCACTATGTTTGTTGGCCACTAATCCATGGAGAGGTTTTGCCCACCCTAAGGCCAGCTCCACAAGATCAAGCTTTAAGTTAAAAAGCTTATGAAAACTACGGCCAATTAGAGATTAATATTTTATTCAGCCTGGTTGCATGCTTCATCTGGAATTAGAACGAACCCAAAAGAACTTGGGAGGTGAAGGGACAAATTTTAAGCCCCTACATGTATGTTCATTACCATTACTATCAAACTTTTTTAAAAGAGAGAAAAAATGTAATCACACAAAATGGCTCTGTAAATCTATAGAAAAAAGATGAACAGATTCCTATCAAGATGTGAAAAAACTTGTTTTTGGTTCAATCATAGCATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAAACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATAGTATGACAGTAAATACTAGTTTCAGTTTCTTTCAGCTATTCCCTATGGGTGTTCACTAATATTACAGGATAGATACTTTGAAACTAACAGCGAAGAGGTTCCATGATAATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGTAAAGAAACTCAAATGACAAAGAAAGCAAACTGAAATCGAGGTGAATCAGAACAAGAACTTATTTGTTGGAGAATGCTAACCTGGTGCGTGGAGTCAACTACACCACCTTTCTTTATGTCAGTAAGCAGAGCATAAGCCATATCTTCACCAACGTCTTCAGGATTTGGAAGCTCTTGCTTCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCAGGTGAACTGCCATTGAAAACCATATTCTTTTAAGACATAAACACAAGGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCAGGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

mRNA sequence

ATGAAACGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGACATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAAACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATACGAAGAGGTTCCATGATAATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGATTTGGAAGCTCTTGCTTCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCAGGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCAGGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

Coding sequence (CDS)

ATGAAACGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGACATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAAACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATACGAAGAGGTTCCATGATAATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGATTTGGAAGCTCTTGCTTCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCAGGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCAGGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

Protein sequence

MKRRIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRHRRSPPMSYRRRGIKPKKVAYAGVQTRAIGQWKTYSLTPGLPRIFNIMNTKTFIPINLSITDIIRRGSMIIIQINKANKKLLDNKDFNSVKKFKHLVSKVRFGSSCFSSSNSVVSSAYPYETVVSTDIKQSSVVSATSEMPNPGIQGLNFNGVNSKEKENVLSSSRSLSMISTYMHIWKQAIKHSTSCSYHSMLKLRRHSS

Homology

[Close]

BLAST of Lsi06G006230 vs. Swiss-Prot
Match: TI214_VITVI (Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-24
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKK+KET ETEE GESEEETDVEIE TSETKGTKQEQE STEED SPSLFSEE
Sbjct: 239 RIPSPILTKKMKETSETEERGESEEETDVEIERTSETKGTKQEQERSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230 vs. Swiss-Prot
Match: TI214_DRIGR (Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.5e-23
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEED  PS  SEE
Sbjct: 236 RIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQEGSTEED--PSFCSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDK+DETEEIR
Sbjct: 296 KEDPDKLDETEEIR 307

[Close]

BLAST of Lsi06G006230 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           R+P+PIVTKKLKET +TEE GESEEE DVEIETTSETKGTKQEQE STEED SPSL SEE
Sbjct: 236 RMPAPIVTKKLKETSKTEERGESEEERDVEIETTSETKGTKQEQERSTEEDPSPSLCSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 296 KEDPDKIDETEEIR 309

[Close]

BLAST of Lsi06G006230 vs. Swiss-Prot
Match: TI214_CUCSA (Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI  K+  +T ET ET ESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 236 RIPSPIPLKETSKTSETAETEESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 296 KEDPDKIDETEEIR 309

[Close]

BLAST of Lsi06G006230 vs. Swiss-Prot
Match: TI214_CHLSC (Protein TIC 214 OS=Chloranthus spicatus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPIVTKKLKET ETEE GESEEETDVEIETTSET+GT++EQEGSTEED  PSL SEE
Sbjct: 236 RIPSPIVTKKLKETSETEEGGESEEETDVEIETTSETRGTQKEQEGSTEED--PSLCSEE 295

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 296 KEDPDKIDETEEIR 307

[Close]

BLAST of Lsi06G006230 vs. TrEMBL
Match: G3ETV7_CUCME (Hypothetical chloroplast RF19 OS=Cucumis melo subsp. melo GN=ycf1 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230 vs. TrEMBL
Match: G3ETU5_CUCME (Hypothetical chloroplast RF19-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230 vs. TrEMBL
Match: G0YDP3_STACO (Hypothetical chloroplast RF1 (Fragment) OS=Staphylea colchica GN=ycf1 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETEE GESEEETD+EIETTSET+GTKQEQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPILTKKLKETSETEERGESEEETDIEIETTSETRGTKQEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230 vs. TrEMBL
Match: G0YDR4_HEUSA (Hypothetical chloroplast RF1 (Fragment) OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230 vs. TrEMBL
Match: D3WEH2_HEUSA (Putative RF1 protein OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 43/74 (58.11%), Postives = 44/74 (59.46%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI TKKLK                     TSET GTKQ+QE STEE   PSLFSEE
Sbjct: 242 RIPSPIFTKKLKG--------------------TSETGGTKQDQEVSTEEAPFPSLFSEE 295

Query: 64  KEDPDKIDETEEIR 78
            ED DKIDE EEIR
Sbjct: 302 GEDLDKIDEMEEIR 295

[Close]

BLAST of Lsi06G006230 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 43/74 (58.11%), Postives = 44/74 (59.46%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI TKKLK                     TSET GTKQ+QE STEE   PSLFSEE
Sbjct: 242 RIPSPIFTKKLKG--------------------TSETGGTKQDQEVSTEEAPFPSLFSEE 295

Query: 64  KEDPDKIDETEEIR 78
            ED DKIDE EEIR
Sbjct: 302 GEDLDKIDEMEEIR 295

[Close]

BLAST of Lsi06G006230 vs. NCBI nr
Match: gi|346578252|ref|YP_004841843.1| (hypothetical chloroplast RF19 [Cucumis melo subsp. melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.9e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230 vs. NCBI nr
Match: gi|346578240|ref|YP_004841831.1| (hypothetical chloroplast RF19-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.9e-24
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETE+ GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE
Sbjct: 242 RIPSPILTKKLKETSETEKRGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 301

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 302 KEDPDKIDETEEIR 315

[Close]

BLAST of Lsi06G006230 vs. NCBI nr
Match: gi|340807120|gb|AEK71720.1| (hypothetical chloroplast RF1 [Staphylea colchica])

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSPI+TKKLKET ETEE GESEEETD+EIETTSET+GTKQEQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPILTKKLKETSETEERGESEEETDIEIETTSETRGTKQEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230 vs. NCBI nr
Match: gi|290489068|gb|ADD30918.1| (putative RF1 protein (chloroplast) [Heuchera sanguinea])

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

[Close]

BLAST of Lsi06G006230 vs. NCBI nr
Match: gi|924443806|gb|ALB78336.1| (hypothetical chloroplast RF1 (chloroplast) [Heuchera parviflora var. saurensis])

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-23
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 4   RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEE 63
           RIPSP VTKKLKET ETEE GESEEETDVEIETTSETKGTK+EQEGSTEED SPSLFSEE
Sbjct: 239 RIPSPTVTKKLKETSETEERGESEEETDVEIETTSETKGTKEEQEGSTEEDPSPSLFSEE 298

Query: 64  KEDPDKIDETEEIR 78
           KEDPDKIDETEEIR
Sbjct: 299 KEDPDKIDETEEIR 312

The following BLAST results are available for this feature:

BLAST of Lsi06G006230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_VITVI	4.5e-24	90.54	Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1	[more]
TI214_DRIGR	6.5e-23	90.54	Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	1.4e-22	87.84	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_CUCSA	1.4e-22	87.84	Protein TIC 214 OS=Cucumis sativus GN=TIC214 PE=3 SV=2	[more]
TI214_CHLSC	3.2e-22	89.19	Protein TIC 214 OS=Chloranthus spicatus GN=TIC214 PE=3 SV=1	[more]

BLAST of Lsi06G006230 vs. TrEMBL


Match Name	E-value	Identity	Description
G3ETV7_CUCME	4.1e-24	94.59	Hypothetical chloroplast RF19 OS=Cucumis melo subsp. melo GN=ycf1 PE=4 SV=1	[more]
G3ETU5_CUCME	4.1e-24	94.59	Hypothetical chloroplast RF19-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
G0YDP3_STACO	2.0e-23	91.89	Hypothetical chloroplast RF1 (Fragment) OS=Staphylea colchica GN=ycf1 PE=4 SV=1	[more]
G0YDR4_HEUSA	2.6e-23	93.24	Hypothetical chloroplast RF1 (Fragment) OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1	[more]
D3WEH2_HEUSA	2.6e-23	93.24	Putative RF1 protein OS=Heuchera sanguinea GN=ycf1 PE=4 SV=1	[more]

BLAST of Lsi06G006230 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	2.8e-08	58.11	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	2.8e-08	58.11	ATCG01000.1 Ycf1 protein	[more]

BLAST of Lsi06G006230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|346578252\|ref\|YP_004841843.1\|	5.9e-24	94.59	hypothetical chloroplast RF19 [Cucumis melo subsp. melo]	[more]
gi\|346578240\|ref\|YP_004841831.1\|	5.9e-24	94.59	hypothetical chloroplast RF19-like protein [Cucumis melo subsp. melo]	[more]
gi\|340807120\|gb\|AEK71720.1\|	2.9e-23	91.89	hypothetical chloroplast RF1 [Staphylea colchica]	[more]
gi\|290489068\|gb\|ADD30918.1\|	3.8e-23	93.24	putative RF1 protein (chloroplast) [Heuchera sanguinea]	[more]
gi\|924443806\|gb\|ALB78336.1\|	3.8e-23	93.24	hypothetical chloroplast RF1 (chloroplast) [Heuchera parviflora var. saurensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006230.1	Lsi06G006230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 4..78 score: 4.3
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 4..77 score: 3.6
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 4..77 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006230	Wax gourd	lsiwgoB509
Lsi06G006230	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006230	Cucumber (Gy14) v1	cgylsiB574
Lsi06G006230	Cucurbita maxima (Rimu)	cmalsiB067
Lsi06G006230	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006230	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006230	Cucurbita moschata (Rifu)	cmolsiB054
Lsi06G006230	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006230	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006230	Cucurbita moschata (Rifu)	cmolsiB135
Lsi06G006230	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G006230	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006230	Cucurbita pepo (Zucchini)	cpelsiB309
Lsi06G006230	Cucurbita pepo (Zucchini)	cpelsiB562
Lsi06G006230	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006230	Wild cucumber (PI 183967)	cpilsiB077
Lsi06G006230	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006230	Cucumber (Chinese Long) v2	culsiB077
Lsi06G006230	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G006230	Melon (DHL92) v3.5.1	lsimeB406
Lsi06G006230	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G006230	Watermelon (97103) v1	lsiwmB397
Lsi06G006230	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006230	Cucumber (Gy14) v2	cgyblsiB072
Lsi06G006230	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G006230	Melon (DHL92) v3.6.1	lsimedB428
Lsi06G006230	Silver-seed gourd	carlsiB486
Lsi06G006230	Silver-seed gourd	carlsiB885
Lsi06G006230	Silver-seed gourd	carlsiB886
Lsi06G006230	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G006230	Cucumber (Chinese Long) v3	cuclsiB087
Lsi06G006230	Watermelon (97103) v2	lsiwmbB365