Lsi06G004300.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGAGAACCCCAAAAATCAGTGAAATGTTGCAAAAAGACCCCACAAACTTTCCGCCTTCTCCTTTCCCTTCCACTTCCATTTCCATGGCAGCAGTCCAGAGAGAAAACGAGACATACCGAGAAAGAATGTCGAGATTGGAATGGAGTAAAGCAAGGAAGAAGATGATCGAAGAACAGGCAAAGGCCGAATTAGAATCTCTCCAACTTCTCTACCCGAATCGTTTCGAATACCTAAAACTCGAGCTCAAATCCTTCATCCATCTTCTTCAATCGCAATCGGAAGAGTCTTTTCCTCAGCCGAACCCTAACTTAGCCTCTAAACGCTCTCCGTCGCCGTCCTATTTCGCTCCTGATTCGCAAGGTCAGTATAGCGAAATAGCAATAATCAATAATATCCTCTTCTTTCTTCTTCTTGTTTACTGATTCATGTGTAAGAGCAGAATCGAGTAGTTGTAGAAAGAGGAAGAAGATGGAGGAAGGAAGAAACGGATTACAGAGAGAGGCTGCTGAATCTGAATCGAAGATTGGACGGCGGAAGGATAGAGTAGATGTAGTTCTGGAAAGAGCCGCCGTTTGTCTCTGCAAGATTCAACGGTTCAAAACGGCTCTGTTTTCCTCCGCCGGTTGACGACGGCGCTCCGTCTTCTTGACGCCTCGAAGGTGCTGCTCCGATCTTTCTCTTTCTTTATTCCCTTTCCTATGCAATGAAATTGCTGCACGTGTGTGAAAATTCTTCGGATTCGGTGGGGATTAACTTAACAAATTTTGTGGGGCGTGTGTGTGAAATCGTTCCTATTTTACGGTCCAATTTTGCGGTAAAAGGAAAAAAAAAATCACTTTTGTATTTGAATGTAATAGAGTAGGAGCGCTTTGATCTCGACAATTTTGTTTATAAATATTTTATTTTATATTTTATTAGGCGATGATTTTAAATTTTCATCAACATTTTTACATTTTCGTTTTAATATTGATATGGGGTGAATTGACATTTACATTTAAAAAAAAAAGAATTGTGAAACATAAAAAATAAATAATAAAATATCTCTAATATGAATATAAGATACATTATAGATTTTGACTTATTTAAAAAGCATAGAATGTTTATTATAGTATAGTAGAAATAGGGAAATTCAAAGCATATACCTTTTAAATATTTTGGGGTGAAATGATACAAAAATAAACATCGGTCTATCGTCGTCTATTACTAATAATAGAGTGACATTTTGCTACTTTAAAATATTTTGGAGAATTGGTATTGATTGGCCCCTATTTAAGGTCCCACTTGAAATTTGGTCTTTTGTTGATGTCATCACACGGTGAATTTACCACTTTAACCATTTTTCCTTCTTTCTTTTCCTTCTCTTTTTTGCAATTTCTTCTTCTTTTTTTTTTTTATTATTTTTTTTTTATTTTCGACGATGTCTTCTGTTTATGTCGCCCTCTTTTTTTTTTCGTTTTTCCAGCGAGATTTCCTTCTCGCCCTCTTGTTTTTTCGAATCAAAGATGTAAGTTGGAGCGTGAATCAGAACGAGAGGAAGAAGCGAGTGTGAGACCAATAAATAAGAGGAAGAAGCAAGAGTGAGAATTCGAACGAAGGAAAAAATTACGAAATTGACAAGGAAGAATTCAAACGAATGAAAAAAGGAAGGAGAACAATGTGAATCGAAGAACGAGATGAAGGAATGAGAAATCTGGGTTGTGTCCGACCTCACGCGTGTTTTAGAGTCAAAATGGTACGTTTATATGCGACTGGCGTAAGCGAAAGGCCAAATTTTGAGCGTTTTTAAAGTGAG CGAGAACCCCAAAAATCAGTGAAATGTTGCAAAAAGACCCCACAAACTTTCCGCCTTCTCCTTTCCCTTCCACTTCCATTTCCATGGCAGCAGTCCAGAGAGAAAACGAGACATACCGAGAAAGAATGTCGAGATTGGAATGGAGTAAAGCAAGGAAGAAGATGATCGAAGAACAGGCAAAGGCCGAATTAGAATCTCTCCAACTTCTCTACCCGAATCGTTTCGAATACCTAAAACTCGAGCTCAAATCCTTCATCCATCTTCTTCAATCGCAATCGGAAGAGTCTTTTCCTCAGCCGAACCCTAACTTAGCCTCTAAACGCTCTCCGTCGCCGTCCTATTTCGCTCCTGATTCGCAAGAATCGAGTAGTTGTAGAAAGAGGAAGAAGATGGAGGAAGGAAGAAACGGATTACAGAGAGAGGCTGCTGAATCTGAATCGAAGATTGGACGGCGGAAGGATAGAGTAGATGTAGTTCTGGAAAGAGCCGCCGTTTGTCTCTGCAAGATTCAACGGTTCAAAACGGCTCTGTTTTCCTCCGCCGGTTGACGACGGCGCTCCGTCTTCTTGACGCCTCGAAGCGAGATTTCCTTCTCGCCCTCTTGTTTTTTCGAATCAAAGATGTAAGTTGGAGCGTGAATCAGAACGAGAGGAAGAAGCGAGTGTGAGACCAATAAATAAGAGGAAGAAGCAAGAGTGAGAATTCGAACGAAGGAAAAAATTACGAAATTGACAAGGAAGAATTCAAACGAATGAAAAAAGGAAGGAGAACAATGTGAATCGAAGAACGAGATGAAGGAATGAGAAATCTGGGTTGTGTCCGACCTCACGCGTGTTTTAGAGTCAAAATGGTACGTTTATATGCGACTGGCGTAAGCGAAAGGCCAAATTTTGAGCGTTTTTAAAGTGAG ATGTTGCAAAAAGACCCCACAAACTTTCCGCCTTCTCCTTTCCCTTCCACTTCCATTTCCATGGCAGCAGTCCAGAGAGAAAACGAGACATACCGAGAAAGAATGTCGAGATTGGAATGGAGTAAAGCAAGGAAGAAGATGATCGAAGAACAGGCAAAGGCCGAATTAGAATCTCTCCAACTTCTCTACCCGAATCGTTTCGAATACCTAAAACTCGAGCTCAAATCCTTCATCCATCTTCTTCAATCGCAATCGGAAGAGTCTTTTCCTCAGCCGAACCCTAACTTAGCCTCTAAACGCTCTCCGTCGCCGTCCTATTTCGCTCCTGATTCGCAAGAATCGAGTAGTTGTAGAAAGAGGAAGAAGATGGAGGAAGGAAGAAACGGATTACAGAGAGAGGCTGCTGAATCTGAATCGAAGATTGGACGGCGGAAGGATAGAGTAGATGTAGTTCTGGAAAGAGCCGCCGTTTGTCTCTGCAAGATTCAACGGTTCAAAACGGCTCTGTTTTCCTCCGCCGGTTGA MLQKDPTNFPPSPFPSTSISMAAVQRENETYRERMSRLEWSKARKKMIEEQAKAELESLQLLYPNRFEYLKLELKSFIHLLQSQSEESFPQPNPNLASKRSPSPSYFAPDSQESSSCRKRKKMEEGRNGLQREAAESESKIGRRKDRVDVVLERAAVCLCKIQRFKTALFSSAG
BLAST of Lsi06G004300.1 vs. TrEMBL
Match: A0A0A0LX97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600880 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53 Identity = 122/159 (76.73%), Postives = 133/159 (83.65%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. TrEMBL
Match: M1BI59_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017740 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. TrEMBL
Match: K4BA24_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11 Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. TrEMBL
Match: A0A072UYA4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g063340 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10 Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. TrEMBL
Match: A0A151SZF8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_015569 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09 Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. TAIR10
Match: AT5G36960.1 (AT5G36960.1 unknown protein) HSP 1 Score: 55.8 bits (133), Expect = 3.0e-08 Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. NCBI nr
Match: gi|659100386|ref|XP_008451071.1| (PREDICTED: uncharacterized protein LOC103492458 [Cucumis melo]) HSP 1 Score: 250.0 bits (637), Expect = 3.1e-63 Identity = 144/183 (78.69%), Postives = 151/183 (82.51%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. NCBI nr
Match: gi|449452807|ref|XP_004144150.1| (PREDICTED: uncharacterized protein LOC101216009 [Cucumis sativus]) HSP 1 Score: 217.2 bits (552), Expect = 2.2e-53 Identity = 122/159 (76.73%), Postives = 133/159 (83.65%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. NCBI nr
Match: gi|970009394|ref|XP_015065576.1| (PREDICTED: uncharacterized protein LOC107010819 [Solanum pennellii]) HSP 1 Score: 79.3 bits (194), Expect = 7.2e-12 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. NCBI nr
Match: gi|565395156|ref|XP_006363211.1| (PREDICTED: uncharacterized protein LOC102581035 [Solanum tuberosum]) HSP 1 Score: 79.0 bits (193), Expect = 9.4e-12 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 1
BLAST of Lsi06G004300.1 vs. NCBI nr
Match: gi|723673587|ref|XP_010316536.1| (PREDICTED: uncharacterized protein LOC104645784 [Solanum lycopersicum]) HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11 Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
|