Lsi06G002420.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G002420.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMeiotic nuclear division protein 1 like
Locationchr06 : 2757025 .. 2759727 (-)
Sequence length516
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCAGCTGCTTAATTCTTTCTTGAAATCGCTGTATGCTAAACTTAATGATCTTATGGTTGTGTGAATTTGACAGAAAATGCAATTGATGATGCTCATGCTGCAGCCAACCGATGGACAGGTATGCATTCTGCACATAAGCTGCCAACTAGTTTTCAATTTTTTTTCCCCTCGCGTTCCCACTTGCAATTTCTTTCGAAACTCTGTTTATTACACGCAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAAGCCAAAGAACAACTAGAGAACCTATACAAAGAGGTAAACCACATTGCTTCGGTAGAAATGGCCTCCTGAATGAACTAGAGCACACGTGTCAAGTTTCGTATCTTCAACTTTTCACAATATCCGTAGGCATGTCGATATATCTGTAATTGAAGGATTCAACAGGATATTAGATATTCATTTATATCTTCAATATCTTTTATAAATGCTCATAAAACATGAAAAAAATGTCATCTATTTAGTCCAATATGAATATTTAGTCCAATATGAATAGGAATGTTAATAACAATATTCATAACTTAGTTAGGGAGTTAAAACAACTTTACTATTAATGTAAATAAATTTTATAAATTCCGCGACGTACATAAATATCCGTCATTATCGATATTTCATTGATCCATCGATATATCCATAAAATTGAAATTTCGATATGTATATCGACATCAATATTTTAATCTTTACTAACTCGTTAAGAATATCTGAGTTATCGGTTGTGTAAATGCAGGTTGGCATGACGGACGATTTTGATTATTTGGAGTTGTCACCAGCTCCTCTGAGTTCAGTTATTGATTAAGTGGGCAGAAGCTCAAAGCTGATTTAACAGCATGCTTGATATCTCAAATGATATTCTGAAGCAAACATTACAGAACATAGGCTACAGTTTGTGGCACCTGAAATTCACCCATCATGTGTACAGTTCGTTTGTTCATTAGTTATAGAAACGTGTTGATTCTTAAATCAATTTAGCTCCATTCCCAGAACACTAAACGATATTTCATGTGAAACCGATGCGATGGTGCGTTCATGGCTCATGAATGTGTAATTTGTTTTCTTCTCTTAGTCGCTATAAGCATGGGAACAGTAAGTGTACTGATGTAATTCAAATGAATTCCTGTGTTTCGAGCTACGCAGCAGAGATTACAGACTTCCTGTGAAATCCATATTAAAAAGGCATGTTAAATTACTTTTTGAAATTTCAGCTTCTAATAAGTTTTTAACTTCTGAATCCTGAAAATTAAAAATTAATTGATCTATTAGATATAAATTAACGAAACTGAATTTGTATTTTTAAAGTTTAGGGACCTTGGAAAATATAAATTGAAACCTAAAACTTTTATGGAGCACTGGATGCTCTTATTTGTAATTTTGGAAGATTAGTGATAAAGTAGACAAACAACCAAGTTTAAAGATTAAATTTGAAATTTAACCTAAAACATTTGCAAACTGAACACATGGATTTTTAAATAACCAACTCAAATTGAACACCCAGCATTCGTGTAATTGAGACACTTACACATTAGCTCCATATTAGGTCAAATACTAACCACAGTAATGTTATATTCATTTACAGAGTATACAAGACCTAAATTAAATTTGCATTATTGTCTGATATTATCACAAAGAGACCTTTCATCAGGCTTTGCTGAACATAGCAAAAAATGTTCAAATCTTTGGAACAACCTCGGGCCAATTCTTCACATCGCCTCTCTTTCGAATTCTTGTCCGGCAATGCCAACTGCAAAATTCCATAAAAAATTTCTTAGCTTGGCAGCTTTAGCTCTCGATGCAAATTCAGGTACAATGCATAAATTTTGATGTTTTCAGGCACATGATCAATAAACATGCCAATCTAGAAGGCCTAGGACAAGTATGTAGGATATTCATTGCTAACAAAGGGAAAGAACTAATCACGAGATTAACCCAAGTACCTGCTTCAGAATATTGTCGAATATCACATCAAAGTGCCATCTCAGCCTGCAGAGCTGCCAGCTCATCTTCTTCAGCAGTTCGTTTCTGAGGAGCGGGTCGAGCAGTTTGTCTTCCTGCAGGGACTGGAATTGGAGCAGCAGGAGCAGTTGTTGCAGGTTGAAGAAGTTGCTCTTCCAACTCAGCACCTTCTAGCTCTTCGAGTTCTGCTTCCAGTTCATCCTGTTCGTACAAACATGTGTTTAATAGATGAACTTCATAAAATTGAAGGTACTAACTGAAAGTGAATACAAACCTCATCAAAATCGGCTGCAGCACCAATCGGATTCGATAGTGCTTCTTGGATCTGTTTCATGTTCTCAGTTTGTTCATTGATCTCATCCATTGTTTTATCCACATCATCGATATTCCTGCAAAAGGAGAATATTTCAAGTTCCATCATCAACCTCATCATCTAAACTCCTTGTTAAGCACTAAACATTCACTTTCATAGATTTTAATCGAAACAAGATGCTCTGCCAGCACATAATTCAAAAGATTCTCACAATCTTCAGGTGGTCGGGAAAGAGAAGAAAAAAATACGGATGAACTCAAAACATCTAAATTTAACAAATCATCAAAGTACACTGAAACAATGTGGTACTCACGTTGCTTTCTGCATTGCTTTCATTGCAGCTGCCCCGGTCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTTGCACCTTCT

mRNA sequence

ATGGAAAATGCAATTGATGATGCTCATGCTGCAGCCAACCGATGGACAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAAGCCAAAGAACAACTAGAGAACCTATACAAAGAGAATATTGTCGAATATCACATCAAAGTGCCATCTCAGCCTGCAGAGCTGCCAGCTCATCTTCTTCAGCAGTTCGTTTCTGAGGAGCGGGTCGAGCAGTTTGTCTTCCTGCAGGGACTGGAATTGGAGCAGCAGGAGCAGTTGTTGCAGGTTGAAGAAGTTGCTCTTCCAACTCAGCACCTTCTAGCTCTTCGAGTTCTGCTTCCAGTTCATCCTGTGGTCGGGAAAGAGAAGAAAAAAATACGGATGAACTCAAAACATCTAAATTTAACAAATCATCAAAGTACACTGAAACAATGTGGTACTCACGTTGCTTTCTGCATTGCTTTCATTGCAGCTGCCCCGGTCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTTGCACCTTCT

Coding sequence (CDS)

ATGGAAAATGCAATTGATGATGCTCATGCTGCAGCCAACCGATGGACAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAAGCCAAAGAACAACTAGAGAACCTATACAAAGAGAATATTGTCGAATATCACATCAAAGTGCCATCTCAGCCTGCAGAGCTGCCAGCTCATCTTCTTCAGCAGTTCGTTTCTGAGGAGCGGGTCGAGCAGTTTGTCTTCCTGCAGGGACTGGAATTGGAGCAGCAGGAGCAGTTGTTGCAGGTTGAAGAAGTTGCTCTTCCAACTCAGCACCTTCTAGCTCTTCGAGTTCTGCTTCCAGTTCATCCTGTGGTCGGGAAAGAGAAGAAAAAAATACGGATGAACTCAAAACATCTAAATTTAACAAATCATCAAAGTACACTGAAACAATGTGGTACTCACGTTGCTTTCTGCATTGCTTTCATTGCAGCTGCCCCGGTCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTTGCACCTTCT

Protein sequence

MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKENIVEYHIKVPSQPAELPAHLLQQFVSEERVEQFVFLQGLELEQQEQLLQVEEVALPTQHLLALRVLLPVHPVVGKEKKKIRMNSKHLNLTNHQSTLKQCGTHVAFCIAFIAAAPVLNASTVSVVAFAPS
Homology
[Close]
BLAST of Lsi06G002420.1 vs. Swiss-Prot
Match: MND1_ARATH (Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 

Query: 3   NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           NAI+ AH +ANRWTDNIFTLRQWCSNNFPQAKEQLE+LY E
Sbjct: 156 NAIEVAHQSANRWTDNIFTLRQWCSNNFPQAKEQLEHLYTE 196

[Close]
BLAST of Lsi06G002420.1 vs. TrEMBL
Match: A0A0A0M1U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575170 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKNAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

[Close]
BLAST of Lsi06G002420.1 vs. TrEMBL
Match: W9QC00_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005483 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 2   ENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           E AI+ AH+AANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 150 EQAIEVAHSAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 191

[Close]
BLAST of Lsi06G002420.1 vs. TrEMBL
Match: B9RKD6_RICCO (Meiotic coiled-coil protein, putative OS=Ricinus communis GN=RCOM_1048520 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.9e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI+ AHAAANRWTDNIFTLRQWCSNNFP+AKEQLEN+YKE
Sbjct: 155 MKTAIEVAHAAANRWTDNIFTLRQWCSNNFPEAKEQLENMYKE 197

[Close]
BLAST of Lsi06G002420.1 vs. TrEMBL
Match: A0A151RGX1_CAJCA (Meiotic nuclear division protein 1 isogeny OS=Cajanus cajan GN=KK1_036845 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI  AHA+ANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 139 MKEAIAVAHASANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 181

[Close]
BLAST of Lsi06G002420.1 vs. TrEMBL
Match: I1J4E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G004700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI  AHA+ANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKEAIAVAHASANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

[Close]
BLAST of Lsi06G002420.1 vs. TAIR10
Match: AT4G29170.1 (AT4G29170.1 Mnd1 family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 

Query: 3   NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           NAI+ AH +ANRWTDNIFTLRQWCSNNFPQAKEQLE+LY E
Sbjct: 156 NAIEVAHQSANRWTDNIFTLRQWCSNNFPQAKEQLEHLYTE 196

[Close]
BLAST of Lsi06G002420.1 vs. NCBI nr
Match: gi|449435810|ref|XP_004135687.1| (PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKNAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

[Close]
BLAST of Lsi06G002420.1 vs. NCBI nr
Match: gi|659099858|ref|XP_008450811.1| (PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKNAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

[Close]
BLAST of Lsi06G002420.1 vs. NCBI nr
Match: gi|703063163|ref|XP_010086898.1| (hypothetical protein L484_005483 [Morus notabilis])

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 2   ENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           E AI+ AH+AANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 150 EQAIEVAHSAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 191

[Close]
BLAST of Lsi06G002420.1 vs. NCBI nr
Match: gi|223546636|gb|EEF48134.1| (Meiotic coiled-coil protein, putative [Ricinus communis])

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI+ AHAAANRWTDNIFTLRQWCSNNFP+AKEQLEN+YKE
Sbjct: 155 MKTAIEVAHAAANRWTDNIFTLRQWCSNNFPEAKEQLENMYKE 197

[Close]
BLAST of Lsi06G002420.1 vs. NCBI nr
Match: gi|1000976921|ref|XP_002514180.2| (PREDICTED: meiotic nuclear division protein 1 homolog [Ricinus communis])

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI+ AHAAANRWTDNIFTLRQWCSNNFP+AKEQLEN+YKE
Sbjct: 154 MKTAIEVAHAAANRWTDNIFTLRQWCSNNFPEAKEQLENMYKE 196

The following BLAST results are available for this feature:
BLAST of Lsi06G002420.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MND1_ARATH3.4e-1485.37Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 ... [more]
BLAST of Lsi06G002420.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1U2_CUCSA1.1e-1697.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575170 PE=4 SV=1[more]
W9QC00_9ROSA5.3e-1490.48Uncharacterized protein OS=Morus notabilis GN=L484_005483 PE=4 SV=1[more]
B9RKD6_RICCO6.9e-1486.05Meiotic coiled-coil protein, putative OS=Ricinus communis GN=RCOM_1048520 PE=4 S... [more]
A0A151RGX1_CAJCA1.2e-1388.37Meiotic nuclear division protein 1 isogeny OS=Cajanus cajan GN=KK1_036845 PE=4 S... [more]
I1J4E4_SOYBN1.2e-1388.37Uncharacterized protein OS=Glycine max GN=GLYMA_01G004700 PE=4 SV=1[more]
BLAST of Lsi06G002420.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G29170.11.9e-1585.37 Mnd1 family protein[more]
BLAST of Lsi06G002420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435810|ref|XP_004135687.1|1.6e-1697.67PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis sativus][more]
gi|659099858|ref|XP_008450811.1|1.6e-1697.67PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis melo][more]
gi|703063163|ref|XP_010086898.1|7.6e-1490.48hypothetical protein L484_005483 [Morus notabilis][more]
gi|223546636|gb|EEF48134.1|9.9e-1486.05Meiotic coiled-coil protein, putative [Ricinus communis][more]
gi|1000976921|ref|XP_002514180.2|9.9e-1486.05PREDICTED: meiotic nuclear division protein 1 homolog [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005647Mnd1
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006302 double-strand break repair
biological_process GO:0009553 embryo sac development
biological_process GO:0009555 pollen development
biological_process GO:0010212 response to ionizing radiation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G002420Lsi06G002420gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G002420.1.CDS.5Lsi06G002420.1.CDS.5CDS
Lsi06G002420.1.CDS.4Lsi06G002420.1.CDS.4CDS
Lsi06G002420.1.CDS.3Lsi06G002420.1.CDS.3CDS
Lsi06G002420.1.CDS.2Lsi06G002420.1.CDS.2CDS
Lsi06G002420.1.CDS.1Lsi06G002420.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G002420.1Lsi06G002420.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005647Meiotic nuclear division protein 1PFAMPF03962Mnd1coord: 1..40
score: 4.