Lsi06G002420 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G002420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMeiotic nuclear division protein 1 like
Locationchr06 : 2757025 .. 2759727 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCAGCTGCTTAATTCTTTCTTGAAATCGCTGTATGCTAAACTTAATGATCTTATGGTTGTGTGAATTTGACAGAAAATGCAATTGATGATGCTCATGCTGCAGCCAACCGATGGACAGGTATGCATTCTGCACATAAGCTGCCAACTAGTTTTCAATTTTTTTTCCCCTCGCGTTCCCACTTGCAATTTCTTTCGAAACTCTGTTTATTACACGCAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAAGCCAAAGAACAACTAGAGAACCTATACAAAGAGGTAAACCACATTGCTTCGGTAGAAATGGCCTCCTGAATGAACTAGAGCACACGTGTCAAGTTTCGTATCTTCAACTTTTCACAATATCCGTAGGCATGTCGATATATCTGTAATTGAAGGATTCAACAGGATATTAGATATTCATTTATATCTTCAATATCTTTTATAAATGCTCATAAAACATGAAAAAAATGTCATCTATTTAGTCCAATATGAATATTTAGTCCAATATGAATAGGAATGTTAATAACAATATTCATAACTTAGTTAGGGAGTTAAAACAACTTTACTATTAATGTAAATAAATTTTATAAATTCCGCGACGTACATAAATATCCGTCATTATCGATATTTCATTGATCCATCGATATATCCATAAAATTGAAATTTCGATATGTATATCGACATCAATATTTTAATCTTTACTAACTCGTTAAGAATATCTGAGTTATCGGTTGTGTAAATGCAGGTTGGCATGACGGACGATTTTGATTATTTGGAGTTGTCACCAGCTCCTCTGAGTTCAGTTATTGATTAAGTGGGCAGAAGCTCAAAGCTGATTTAACAGCATGCTTGATATCTCAAATGATATTCTGAAGCAAACATTACAGAACATAGGCTACAGTTTGTGGCACCTGAAATTCACCCATCATGTGTACAGTTCGTTTGTTCATTAGTTATAGAAACGTGTTGATTCTTAAATCAATTTAGCTCCATTCCCAGAACACTAAACGATATTTCATGTGAAACCGATGCGATGGTGCGTTCATGGCTCATGAATGTGTAATTTGTTTTCTTCTCTTAGTCGCTATAAGCATGGGAACAGTAAGTGTACTGATGTAATTCAAATGAATTCCTGTGTTTCGAGCTACGCAGCAGAGATTACAGACTTCCTGTGAAATCCATATTAAAAAGGCATGTTAAATTACTTTTTGAAATTTCAGCTTCTAATAAGTTTTTAACTTCTGAATCCTGAAAATTAAAAATTAATTGATCTATTAGATATAAATTAACGAAACTGAATTTGTATTTTTAAAGTTTAGGGACCTTGGAAAATATAAATTGAAACCTAAAACTTTTATGGAGCACTGGATGCTCTTATTTGTAATTTTGGAAGATTAGTGATAAAGTAGACAAACAACCAAGTTTAAAGATTAAATTTGAAATTTAACCTAAAACATTTGCAAACTGAACACATGGATTTTTAAATAACCAACTCAAATTGAACACCCAGCATTCGTGTAATTGAGACACTTACACATTAGCTCCATATTAGGTCAAATACTAACCACAGTAATGTTATATTCATTTACAGAGTATACAAGACCTAAATTAAATTTGCATTATTGTCTGATATTATCACAAAGAGACCTTTCATCAGGCTTTGCTGAACATAGCAAAAAATGTTCAAATCTTTGGAACAACCTCGGGCCAATTCTTCACATCGCCTCTCTTTCGAATTCTTGTCCGGCAATGCCAACTGCAAAATTCCATAAAAAATTTCTTAGCTTGGCAGCTTTAGCTCTCGATGCAAATTCAGGTACAATGCATAAATTTTGATGTTTTCAGGCACATGATCAATAAACATGCCAATCTAGAAGGCCTAGGACAAGTATGTAGGATATTCATTGCTAACAAAGGGAAAGAACTAATCACGAGATTAACCCAAGTACCTGCTTCAGAATATTGTCGAATATCACATCAAAGTGCCATCTCAGCCTGCAGAGCTGCCAGCTCATCTTCTTCAGCAGTTCGTTTCTGAGGAGCGGGTCGAGCAGTTTGTCTTCCTGCAGGGACTGGAATTGGAGCAGCAGGAGCAGTTGTTGCAGGTTGAAGAAGTTGCTCTTCCAACTCAGCACCTTCTAGCTCTTCGAGTTCTGCTTCCAGTTCATCCTGTTCGTACAAACATGTGTTTAATAGATGAACTTCATAAAATTGAAGGTACTAACTGAAAGTGAATACAAACCTCATCAAAATCGGCTGCAGCACCAATCGGATTCGATAGTGCTTCTTGGATCTGTTTCATGTTCTCAGTTTGTTCATTGATCTCATCCATTGTTTTATCCACATCATCGATATTCCTGCAAAAGGAGAATATTTCAAGTTCCATCATCAACCTCATCATCTAAACTCCTTGTTAAGCACTAAACATTCACTTTCATAGATTTTAATCGAAACAAGATGCTCTGCCAGCACATAATTCAAAAGATTCTCACAATCTTCAGGTGGTCGGGAAAGAGAAGAAAAAAATACGGATGAACTCAAAACATCTAAATTTAACAAATCATCAAAGTACACTGAAACAATGTGGTACTCACGTTGCTTTCTGCATTGCTTTCATTGCAGCTGCCCCGGTCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTTGCACCTTCT

mRNA sequence

ATGGAAAATGCAATTGATGATGCTCATGCTGCAGCCAACCGATGGACAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAAGCCAAAGAACAACTAGAGAACCTATACAAAGAGAATATTGTCGAATATCACATCAAAGTGCCATCTCAGCCTGCAGAGCTGCCAGCTCATCTTCTTCAGCAGTTCGTTTCTGAGGAGCGGGTCGAGCAGTTTGTCTTCCTGCAGGGACTGGAATTGGAGCAGCAGGAGCAGTTGTTGCAGGTTGAAGAAGTTGCTCTTCCAACTCAGCACCTTCTAGCTCTTCGAGTTCTGCTTCCAGTTCATCCTGTGGTCGGGAAAGAGAAGAAAAAAATACGGATGAACTCAAAACATCTAAATTTAACAAATCATCAAAGTACACTGAAACAATGTGGTACTCACGTTGCTTTCTGCATTGCTTTCATTGCAGCTGCCCCGGTCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTTGCACCTTCT

Coding sequence (CDS)

ATGGAAAATGCAATTGATGATGCTCATGCTGCAGCCAACCGATGGACAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAAGCCAAAGAACAACTAGAGAACCTATACAAAGAGAATATTGTCGAATATCACATCAAAGTGCCATCTCAGCCTGCAGAGCTGCCAGCTCATCTTCTTCAGCAGTTCGTTTCTGAGGAGCGGGTCGAGCAGTTTGTCTTCCTGCAGGGACTGGAATTGGAGCAGCAGGAGCAGTTGTTGCAGGTTGAAGAAGTTGCTCTTCCAACTCAGCACCTTCTAGCTCTTCGAGTTCTGCTTCCAGTTCATCCTGTGGTCGGGAAAGAGAAGAAAAAAATACGGATGAACTCAAAACATCTAAATTTAACAAATCATCAAAGTACACTGAAACAATGTGGTACTCACGTTGCTTTCTGCATTGCTTTCATTGCAGCTGCCCCGGTCCTCAATGCATCTACAGTCTCAGTTGTGGCTTTTGCACCTTCT

Protein sequence

MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKENIVEYHIKVPSQPAELPAHLLQQFVSEERVEQFVFLQGLELEQQEQLLQVEEVALPTQHLLALRVLLPVHPVVGKEKKKIRMNSKHLNLTNHQSTLKQCGTHVAFCIAFIAAAPVLNASTVSVVAFAPS
BLAST of Lsi06G002420 vs. Swiss-Prot
Match: MND1_ARATH (Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1

Query: 3   NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           NAI+ AH +ANRWTDNIFTLRQWCSNNFPQAKEQLE+LY E
Sbjct: 156 NAIEVAHQSANRWTDNIFTLRQWCSNNFPQAKEQLEHLYTE 196

BLAST of Lsi06G002420 vs. TrEMBL
Match: A0A0A0M1U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575170 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKNAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

BLAST of Lsi06G002420 vs. TrEMBL
Match: W9QC00_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005483 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1

Query: 2   ENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           E AI+ AH+AANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 150 EQAIEVAHSAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 191

BLAST of Lsi06G002420 vs. TrEMBL
Match: B9RKD6_RICCO (Meiotic coiled-coil protein, putative OS=Ricinus communis GN=RCOM_1048520 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.9e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI+ AHAAANRWTDNIFTLRQWCSNNFP+AKEQLEN+YKE
Sbjct: 155 MKTAIEVAHAAANRWTDNIFTLRQWCSNNFPEAKEQLENMYKE 197

BLAST of Lsi06G002420 vs. TrEMBL
Match: A0A151RGX1_CAJCA (Meiotic nuclear division protein 1 isogeny OS=Cajanus cajan GN=KK1_036845 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI  AHA+ANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 139 MKEAIAVAHASANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 181

BLAST of Lsi06G002420 vs. TrEMBL
Match: I1J4E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G004700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI  AHA+ANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKEAIAVAHASANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

BLAST of Lsi06G002420 vs. TAIR10
Match: AT4G29170.1 (AT4G29170.1 Mnd1 family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1

Query: 3   NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           NAI+ AH +ANRWTDNIFTLRQWCSNNFPQAKEQLE+LY E
Sbjct: 156 NAIEVAHQSANRWTDNIFTLRQWCSNNFPQAKEQLEHLYTE 196

BLAST of Lsi06G002420 vs. NCBI nr
Match: gi|449435810|ref|XP_004135687.1| (PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKNAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

BLAST of Lsi06G002420 vs. NCBI nr
Match: gi|659099858|ref|XP_008450811.1| (PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+NAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 154 MKNAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 196

BLAST of Lsi06G002420 vs. NCBI nr
Match: gi|703063163|ref|XP_010086898.1| (hypothetical protein L484_005483 [Morus notabilis])

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1

Query: 2   ENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           E AI+ AH+AANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE
Sbjct: 150 EQAIEVAHSAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 191

BLAST of Lsi06G002420 vs. NCBI nr
Match: gi|223546636|gb|EEF48134.1| (Meiotic coiled-coil protein, putative [Ricinus communis])

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI+ AHAAANRWTDNIFTLRQWCSNNFP+AKEQLEN+YKE
Sbjct: 155 MKTAIEVAHAAANRWTDNIFTLRQWCSNNFPEAKEQLENMYKE 197

BLAST of Lsi06G002420 vs. NCBI nr
Match: gi|1000976921|ref|XP_002514180.2| (PREDICTED: meiotic nuclear division protein 1 homolog [Ricinus communis])

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1

Query: 1   MENAIDDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKE 44
           M+ AI+ AHAAANRWTDNIFTLRQWCSNNFP+AKEQLEN+YKE
Sbjct: 154 MKTAIEVAHAAANRWTDNIFTLRQWCSNNFPEAKEQLENMYKE 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MND1_ARATH3.4e-1485.37Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A0A0M1U2_CUCSA1.1e-1697.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575170 PE=4 SV=1[more]
W9QC00_9ROSA5.3e-1490.48Uncharacterized protein OS=Morus notabilis GN=L484_005483 PE=4 SV=1[more]
B9RKD6_RICCO6.9e-1486.05Meiotic coiled-coil protein, putative OS=Ricinus communis GN=RCOM_1048520 PE=4 S... [more]
A0A151RGX1_CAJCA1.2e-1388.37Meiotic nuclear division protein 1 isogeny OS=Cajanus cajan GN=KK1_036845 PE=4 S... [more]
I1J4E4_SOYBN1.2e-1388.37Uncharacterized protein OS=Glycine max GN=GLYMA_01G004700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G29170.11.9e-1585.37 Mnd1 family protein[more]
Match NameE-valueIdentityDescription
gi|449435810|ref|XP_004135687.1|1.6e-1697.67PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis sativus][more]
gi|659099858|ref|XP_008450811.1|1.6e-1697.67PREDICTED: meiotic nuclear division protein 1 homolog [Cucumis melo][more]
gi|703063163|ref|XP_010086898.1|7.6e-1490.48hypothetical protein L484_005483 [Morus notabilis][more]
gi|223546636|gb|EEF48134.1|9.9e-1486.05Meiotic coiled-coil protein, putative [Ricinus communis][more]
gi|1000976921|ref|XP_002514180.2|9.9e-1486.05PREDICTED: meiotic nuclear division protein 1 homolog [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005647Mnd1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006302 double-strand break repair
biological_process GO:0006312 mitotic recombination
biological_process GO:0042991 transcription factor import into nucleus
biological_process GO:0007129 synapsis
biological_process GO:0016444 somatic cell DNA recombination
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0010332 response to gamma radiation
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009553 embryo sac development
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006306 DNA methylation
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006325 chromatin organization
biological_process GO:0010212 response to ionizing radiation
biological_process GO:0009555 pollen development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G002420.1Lsi06G002420.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005647Meiotic nuclear division protein 1PFAMPF03962Mnd1coord: 1..40
score: 4.

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G002420Cucumber (Chinese Long) v3cuclsiB145
Lsi06G002420Watermelon (97103) v2lsiwmbB359
Lsi06G002420Watermelon (97103) v2lsiwmbB365
Lsi06G002420Watermelon (97103) v2lsiwmbB382
Lsi06G002420Wax gourdlsiwgoB478
Lsi06G002420Wax gourdlsiwgoB484
Lsi06G002420Bottle gourd (USVL1VR-Ls)lsilsiB059
Lsi06G002420Bottle gourd (USVL1VR-Ls)lsilsiB163
Lsi06G002420Cucumber (Gy14) v1cgylsiB164
Lsi06G002420Cucurbita maxima (Rimu)cmalsiB128
Lsi06G002420Cucurbita maxima (Rimu)cmalsiB179
Lsi06G002420Cucurbita maxima (Rimu)cmalsiB253
Lsi06G002420Cucurbita maxima (Rimu)cmalsiB444
Lsi06G002420Cucurbita maxima (Rimu)cmalsiB732
Lsi06G002420Cucurbita moschata (Rifu)cmolsiB050
Lsi06G002420Cucurbita moschata (Rifu)cmolsiB169
Lsi06G002420Cucurbita moschata (Rifu)cmolsiB241
Lsi06G002420Cucurbita moschata (Rifu)cmolsiB433
Lsi06G002420Cucurbita moschata (Rifu)cmolsiB724
Lsi06G002420Cucurbita pepo (Zucchini)cpelsiB093
Lsi06G002420Cucurbita pepo (Zucchini)cpelsiB683
Lsi06G002420Wild cucumber (PI 183967)cpilsiB133
Lsi06G002420Cucumber (Chinese Long) v2culsiB134
Lsi06G002420Melon (DHL92) v3.5.1lsimeB411
Lsi06G002420Melon (DHL92) v3.5.1lsimeB413
Lsi06G002420Watermelon (Charleston Gray)lsiwcgB355
Lsi06G002420Watermelon (Charleston Gray)lsiwcgB381
Lsi06G002420Watermelon (97103) v1lsiwmB401
Lsi06G002420Watermelon (97103) v1lsiwmB411
Lsi06G002420Cucumber (Gy14) v2cgyblsiB123
Lsi06G002420Melon (DHL92) v3.6.1lsimedB418
Lsi06G002420Melon (DHL92) v3.6.1lsimedB434
Lsi06G002420Melon (DHL92) v3.6.1lsimedB438
Lsi06G002420Silver-seed gourdcarlsiB034
Lsi06G002420Silver-seed gourdcarlsiB086
Lsi06G002420Silver-seed gourdcarlsiB180
Lsi06G002420Silver-seed gourdcarlsiB519
Lsi06G002420Silver-seed gourdcarlsiB817