Lsi06G000840.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000840.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 850716 .. 852167 (-)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGTAATGATCGCAAACTTTACCTACAAGAGGGAGTTTGTTTGGTCAATGGTGTATTTGTCACTGACAATTCAAGCTGGACGATATCAAAGAAATTTTGTCTGGGAGTCAAAATTACTGATGAAAAAATATTGGGTGACTTTGGTGTGATCCAACGAGCAATTTCTCAACCATTTAAAGTTTTGGATGATCGAATGAAAGGTATAATTATTTCTCTATCCTCCCCTTACACACACCCGTTTCGTATTTACACAAAATGGCAAAATTTTTAGATAGTTGTGATAGACGGAAGTCTATTAAGGCTTATTAGTGATAGAAATGATAGAAGTCTATCACTGATAGATGTTCATAGAAGTCTATCAATGTCTATCACTGTTTTTTTTTTGCTATTTTTTGTAAATAGTTTAACATTTTTTCTATCTGGTGAAAACTTTTCTTTATATATAATGTAATAATTTTTTTTATAATTAATATTAATTAGGGAGTGAAAAACATCACCCTCCAAATTGGGACGATGAAGTATCAAGACTGGAAGGGATAGGTGGTACATATCAAAAAATCTTATCTTCATTAAAACCTCCAATAAATACTGTGGGTGATTTCTTGGAGGCTCATCGTCAAATGGGTGCTATTGCTCTGAAAAAGGTAATTTACAAAAAAAGAAAAAAAAAATTAATCTGTTTTTGTTAGGCGGTTTTGAAATATAGAAAAATGAACTAAAATATATATAAATATAGAAAAATTTCACTGTCTATCAGCGATAGACCACGATAGACTTCTATTACTGGGCAATAGACCGCAGTAGACTTTTGTCGCTTAATGATAGAAGTCAAATACAGTCTATCAACGATAGACAGTAAAATTTTTATATATTTATAAATAGTTTACTATTTTTTCTATTTATAATAATTTTCCTTTCTATTAACTATTTTAAGAGTAATATTTGGGTGTACATTTAAGGTTGTATCTATCATTTTCTCGCTCCAACCACACATGAGAAAAAACTCAAAAAAAAAAAAAGTTTGCTACATGGCAAACTTCGATAACTTGGTGAACTGCAAAAAGATGAGTGTGACCTAAAATGCACTACCAGTGTATTTAATCTCATTTTAAAAAAAATTAAGGAGTTGATTACTTTTCATATATATATGTAGATTCTAGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

mRNA sequence

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

Coding sequence (CDS)

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

Protein sequence

MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKPSSLISGMTRSDKKWNKILNHAMECVVDVPINYDPTFQV

Homology

[Close]

BLAST of Lsi06G000840.1 vs. TrEMBL
Match: A0A0A0KZ38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G494210 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-07
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1


Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGK 59
           MYAN EIKSE+G+ LK+ I ++ N    +S   LSSAP+E FL DGE KEI  S  GK
Sbjct: 120 MYANKEIKSESGETLKIAIFNAANLKIPVSTDILSSAPVELFLQDGEHKEISKSDNGK 177

[Close]

BLAST of Lsi06G000840.1 vs. NCBI nr
Match: gi|659083319|ref|XP_008442288.1| (PREDICTED: uncharacterized protein LOC103486196 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-11
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKP 60
           MYAN EIKSENG+PLK+ I DS N N  +S  +LSSAP+E FL DGE KEI  S  GKP
Sbjct: 119 MYANKEIKSENGEPLKIGIFDSANLNVPVSTDKLSSAPVELFLEDGEHKEISKSDNGKP 177

[Close]

BLAST of Lsi06G000840.1 vs. NCBI nr
Match: gi|700199620|gb|KGN54778.1| (hypothetical protein Csa_4G494210 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1


Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGK 59
           MYAN EIKSE+G+ LK+ I ++ N    +S   LSSAP+E FL DGE KEI  S  GK
Sbjct: 120 MYANKEIKSESGETLKIAIFNAANLKIPVSTDILSSAPVELFLQDGEHKEISKSDNGK 177

[Close]

BLAST of Lsi06G000840.1 vs. NCBI nr
Match: gi|449435617|ref|XP_004135591.1| (PREDICTED: uncharacterized protein LOC101221357 isoform X3 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

[Close]

BLAST of Lsi06G000840.1 vs. NCBI nr
Match: gi|778662326|ref|XP_011659742.1| (PREDICTED: uncharacterized protein LOC101221357 isoform X1 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

[Close]

BLAST of Lsi06G000840.1 vs. NCBI nr
Match: gi|778662328|ref|XP_011659747.1| (PREDICTED: uncharacterized protein LOC101221357 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

The following BLAST results are available for this feature:

BLAST of Lsi06G000840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G000840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ38_CUCSA	7.9e-07	55.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G494210 PE=4 SV=1	[more]

BLAST of Lsi06G000840.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G000840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083319\|ref\|XP_008442288.1\|	9.9e-11	64.41	PREDICTED: uncharacterized protein LOC103486196 [Cucumis melo]	[more]
gi\|700199620\|gb\|KGN54778.1\|	1.1e-06	55.17	hypothetical protein Csa_4G494210 [Cucumis sativus]	[more]
gi\|449435617\|ref\|XP_004135591.1\|	1.1e-06	53.19	PREDICTED: uncharacterized protein LOC101221357 isoform X3 [Cucumis sativus]	[more]
gi\|778662326\|ref\|XP_011659742.1\|	1.1e-06	53.19	PREDICTED: uncharacterized protein LOC101221357 isoform X1 [Cucumis sativus]	[more]
gi\|778662328\|ref\|XP_011659747.1\|	1.1e-06	53.19	PREDICTED: uncharacterized protein LOC101221357 isoform X2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G000840	Lsi06G000840	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G000840.1.CDS.2	Lsi06G000840.1.CDS.2	CDS
Lsi06G000840.1.CDS.1	Lsi06G000840.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G000840.1	Lsi06G000840.1-protein	polypeptide