Lsi06G000840 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 850716 .. 852167 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGTAATGATCGCAAACTTTACCTACAAGAGGGAGTTTGTTTGGTCAATGGTGTATTTGTCACTGACAATTCAAGCTGGACGATATCAAAGAAATTTTGTCTGGGAGTCAAAATTACTGATGAAAAAATATTGGGTGACTTTGGTGTGATCCAACGAGCAATTTCTCAACCATTTAAAGTTTTGGATGATCGAATGAAAGGTATAATTATTTCTCTATCCTCCCCTTACACACACCCGTTTCGTATTTACACAAAATGGCAAAATTTTTAGATAGTTGTGATAGACGGAAGTCTATTAAGGCTTATTAGTGATAGAAATGATAGAAGTCTATCACTGATAGATGTTCATAGAAGTCTATCAATGTCTATCACTGTTTTTTTTTTGCTATTTTTTGTAAATAGTTTAACATTTTTTCTATCTGGTGAAAACTTTTCTTTATATATAATGTAATAATTTTTTTTATAATTAATATTAATTAGGGAGTGAAAAACATCACCCTCCAAATTGGGACGATGAAGTATCAAGACTGGAAGGGATAGGTGGTACATATCAAAAAATCTTATCTTCATTAAAACCTCCAATAAATACTGTGGGTGATTTCTTGGAGGCTCATCGTCAAATGGGTGCTATTGCTCTGAAAAAGGTAATTTACAAAAAAAGAAAAAAAAAATTAATCTGTTTTTGTTAGGCGGTTTTGAAATATAGAAAAATGAACTAAAATATATATAAATATAGAAAAATTTCACTGTCTATCAGCGATAGACCACGATAGACTTCTATTACTGGGCAATAGACCGCAGTAGACTTTTGTCGCTTAATGATAGAAGTCAAATACAGTCTATCAACGATAGACAGTAAAATTTTTATATATTTATAAATAGTTTACTATTTTTTCTATTTATAATAATTTTCCTTTCTATTAACTATTTTAAGAGTAATATTTGGGTGTACATTTAAGGTTGTATCTATCATTTTCTCGCTCCAACCACACATGAGAAAAAACTCAAAAAAAAAAAAAGTTTGCTACATGGCAAACTTCGATAACTTGGTGAACTGCAAAAAGATGAGTGTGACCTAAAATGCACTACCAGTGTATTTAATCTCATTTTAAAAAAAATTAAGGAGTTGATTACTTTTCATATATATATGTAGATTCTAGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

mRNA sequence

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

Coding sequence (CDS)

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

Protein sequence

MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKPSSLISGMTRSDKKWNKILNHAMECVVDVPINYDPTFQV
Homology
[Close]
BLAST of Lsi06G000840 vs. TrEMBL
Match: A0A0A0KZ38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G494210 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-07
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGK 59
           MYAN EIKSE+G+ LK+ I ++ N    +S   LSSAP+E FL DGE KEI  S  GK
Sbjct: 120 MYANKEIKSESGETLKIAIFNAANLKIPVSTDILSSAPVELFLQDGEHKEISKSDNGK 177

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: gi|659083319|ref|XP_008442288.1| (PREDICTED: uncharacterized protein LOC103486196 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-11
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKP 60
           MYAN EIKSENG+PLK+ I DS N N  +S  +LSSAP+E FL DGE KEI  S  GKP
Sbjct: 119 MYANKEIKSENGEPLKIGIFDSANLNVPVSTDKLSSAPVELFLEDGEHKEISKSDNGKP 177

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: gi|700199620|gb|KGN54778.1| (hypothetical protein Csa_4G494210 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGK 59
           MYAN EIKSE+G+ LK+ I ++ N    +S   LSSAP+E FL DGE KEI  S  GK
Sbjct: 120 MYANKEIKSESGETLKIAIFNAANLKIPVSTDILSSAPVELFLQDGEHKEISKSDNGK 177

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: gi|449435617|ref|XP_004135591.1| (PREDICTED: uncharacterized protein LOC101221357 isoform X3 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: gi|778662326|ref|XP_011659742.1| (PREDICTED: uncharacterized protein LOC101221357 isoform X1 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: gi|778662328|ref|XP_011659747.1| (PREDICTED: uncharacterized protein LOC101221357 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

The following BLAST results are available for this feature:
BLAST of Lsi06G000840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G000840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ38_CUCSA7.9e-0755.17Uncharacterized protein OS=Cucumis sativus GN=Csa_4G494210 PE=4 SV=1[more]
BLAST of Lsi06G000840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G000840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083319|ref|XP_008442288.1|9.9e-1164.41PREDICTED: uncharacterized protein LOC103486196 [Cucumis melo][more]
gi|700199620|gb|KGN54778.1|1.1e-0655.17hypothetical protein Csa_4G494210 [Cucumis sativus][more]
gi|449435617|ref|XP_004135591.1|1.1e-0653.19PREDICTED: uncharacterized protein LOC101221357 isoform X3 [Cucumis sativus][more]
gi|778662326|ref|XP_011659742.1|1.1e-0653.19PREDICTED: uncharacterized protein LOC101221357 isoform X1 [Cucumis sativus][more]
gi|778662328|ref|XP_011659747.1|1.1e-0653.19PREDICTED: uncharacterized protein LOC101221357 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000840.1Lsi06G000840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G000840Cla97C03G067490Watermelon (97103) v2lsiwmbB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G000840Watermelon (97103) v2lsiwmbB365
Lsi06G000840Wax gourdlsiwgoB486
Lsi06G000840Wax gourdlsiwgoB507
Lsi06G000840Bottle gourd (USVL1VR-Ls)lsilsiB060
Lsi06G000840Bottle gourd (USVL1VR-Ls)lsilsiB161
Lsi06G000840Cucumber (Gy14) v1cgylsiB101
Lsi06G000840Cucurbita maxima (Rimu)cmalsiB076
Lsi06G000840Cucurbita maxima (Rimu)cmalsiB178
Lsi06G000840Cucurbita maxima (Rimu)cmalsiB734
Lsi06G000840Cucurbita moschata (Rifu)cmolsiB062
Lsi06G000840Cucurbita moschata (Rifu)cmolsiB136
Lsi06G000840Cucurbita moschata (Rifu)cmolsiB168
Lsi06G000840Cucurbita moschata (Rifu)cmolsiB723
Lsi06G000840Cucurbita pepo (Zucchini)cpelsiB095
Lsi06G000840Cucurbita pepo (Zucchini)cpelsiB302
Lsi06G000840Cucurbita pepo (Zucchini)cpelsiB570
Lsi06G000840Cucurbita pepo (Zucchini)cpelsiB682
Lsi06G000840Wild cucumber (PI 183967)cpilsiB059
Lsi06G000840Wild cucumber (PI 183967)cpilsiB134
Lsi06G000840Cucumber (Chinese Long) v2culsiB136
Lsi06G000840Cucumber (Chinese Long) v2culsiB058
Lsi06G000840Melon (DHL92) v3.5.1lsimeB396
Lsi06G000840Melon (DHL92) v3.5.1lsimeB416
Lsi06G000840Watermelon (Charleston Gray)lsiwcgB359
Lsi06G000840Watermelon (Charleston Gray)lsiwcgB362
Lsi06G000840Watermelon (Charleston Gray)lsiwcgB364
Lsi06G000840Watermelon (97103) v1lsiwmB392
Lsi06G000840Watermelon (97103) v1lsiwmB396
Lsi06G000840Watermelon (97103) v1lsiwmB409
Lsi06G000840Cucumber (Gy14) v2cgyblsiB055
Lsi06G000840Melon (DHL92) v3.6.1lsimedB418
Lsi06G000840Cucumber (Chinese Long) v3cuclsiB068