Lsi06G000600.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000600.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 515990 .. 519157 (-)
Sequence length522
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATACCCCGCATCTCCATATTTAATAAATTTTATTTTATTTTAACCTAATTATTAAATATGAGTTGGGTTGAGTTGGTAAAAATTATCAACTCAATGGTTGGTTAACTTTACTAACTCAACCCAACTTTTTATCCTATCAATGACTAGCCTGACCAACATTCTGATGATGACTTTTGCGCAATCAACTCCAGTCCTTGATCAATTTCAGCCCAACCAATATTGACATTCACCTTAAACAATCAACTCGAGTAAAGACCACCCATCCACACATTGTACTAAATATTTATTACTCACACACACTAAAAAAACACAAAAATACATACTTTTTAGGTTACAAAAAATTGCACCAAATATTCATAAACTCCACCCAACTCAACTATGAACTCTAAATACAACGTTGTTAATTAAACACTAATTTAATAACACATATACACACGTTGTTAATTAAATACTAATTTAATAACACATATATTTTCAATTTTGAACCCTTGATCAAACATCTTTTCTTAACAAATGAACTTATTATGAAGCACTTTTAAAATACATTCAAAAGTTTGAAATGAACATAATAAAAAAGTTGTCTTTTTTTTTTTTAATATATAATATACAAAGTTGTTGGCCTAATTAAACTCTCAAACAAAAACTGCTAATTCCCTTTTTCACCCTTCACCTCACAAAAATCTCTACATTTTCTTCACCAATATTTTCCACCTTATGCGTTGGCCTAACTTCCAACTGCCATTCCCATCATCTCATTCATCTATATATTCACATAAATATATCATCACATTTCTTCTTAATTTTCTCACTTCCTTTCACTCCAATGGCTTCCCCAATTAGCCTCCTCCCCGTCGTTCTCGCTCTCGTTGTCTCGCTCCCCTGCCCCTCAGGTCATCTCAATGCCGTTCGGAACTCAATCCCGATACGGTTTCCCCCTTTGTTTGTTTTCTACGAGTTCGGTTTCGGTTTTTTATTTTGAAGGAGATAGAATATAATCTATTTGTTTTGTGTTTTGTATTGTGACAGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTGTGTGTTTTTTCTTCATAAGCTCTCTCTCTCCTTACGACGAGTTTCATAACTTTTCTTTCAATAACTAAGTTGTATTCGTATTTGTTATATTTACATTTTTTACCTTAGACGCTTCTGATCTGTAATCTGAATTATTCTTTGTAATAATAAATTGCTCTGTCTCTGCTCGTGAATATAGCTAACACACTATTAATAAACTACATAATTAATTTGTGTTTGTAGATATACCATGGGTGTGAAAGTGGTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCAGAGGCTACTAACCTATTTTGCAATGGACCGTGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTTCAACAAGGCCACGACGCAAAGCTTTCGAAATGTCCTCCGTGTCGGCTGCAGCTTCTCGAGCCAAGGACGAGGTAGGCCATAGGCTGCTGCTAGCTAGCTTGTGTTGGTTTTCACTTTATTTGATAGATGCATTTTTCATGCCTAAAAAAACATAGAGAAAGTGCATCTTAGTAATTGAGAAAAAAAAGAAACTAAGTTTTAGCCACTATATAAATTAATTAAATATGAAAAAAGATAGGAAAAATACTTTTGGGTTTTTTAGGTTTTGGGTCTAGCTAGTTAGTTATTAAGTTTTGAATTTGATTTCAATCTAGTTGGTAAGTTTCAAAATGTTACAATTTTACCTTTGAGATTCAAATTTTGATTCTATTTGGTCCCTAAGTTTCAAGATTTGCAATTTTAACATTGATTTTCACTAAATATTCACTTTCAGTCTTTAGCGTTAATATTTATTAATTAATTTAGGGAAATTACTATAAACAGAAAAATATCAAACTATTTACAAATATAGAAAAATTTTACTATCTATCAGTGATAGACCGCGATAGAATTCTATCGCTTTCTATTGCTCAAGCAAATAAATTCTATCGCCTGAGCGATAGAAAGCGATACAATTCTATCACGATCTATTAGTGATAGACGGTAAAAATTTTCTATATTTGTAAATAGTTTGGCTCATTCTTCTATATTTGAAAAGAGCCCATTAATTTAAAATAATTATAAAGTTAAATTTTAATTTTAATAGTGATGAAAAACCATGAAACTTAATTAATTATAATTCTTTTTAATTCTTTTAAGATAATTAATTGACATTAACACTAAAGATGCAAAGTTAGTATTTAGTTAAAAATCAAAGCTAAAAATGTATATCTTGAAACTTAGCTAGTGACCAAGTTTGAAACAAAACTCAAATCTTAAGGTAAAATTGTAACATTTTAAAACTTAAAGACTAAAGGTTTGTTTGAGGGTTGAAATGTAATCAAGATTACTGAGATCAGAGGAGTGTTGAAATGCGTGAAGTATTGAGGGTGGAACGAAAATGGGATCGTGAAACGTGAAAACGGTGGCAAGGAGGATTTAGTTAAAAACTGTTGGAACGTAATGGGTTTAATATTACAAATTGGACCCAAAACGCTCAATCCAAACATGGGTTTTGTATTACATTATGTTCCAAACTCAATCCATTACCGGCTCTCAAACAGCCCCTAAATTGAAACTAAACTCAAAATTTAAGGACTAAAAATGTAACATTCAGAAACCTTAGGGACCGAATAGAAACGACTAAACCCAAAATCTAAAGACCAAGAATGTTTTTTTTTTTTTTTTTCCAAACATATAACTTAAGTGGTCAAAATTTATATTCTCAACCAAATTTTGTGTAGAACATAACATTCAATTTTTTTTTTTTTTTAATATAGTTTAGAATGATATGATTTGTAACATCATCTTTTATTTGCCATTGTTGTTTATTGGTTTAGGGAACTTCAATCCAGGATTGTTCGTGCAAGGTGAAATTAGTGAAGCTCACATCCTCCAAAAATGGCTCATCATCTATTGTATTCTTTTTCTTGTTGGCTGTTGTTTTTTCATCTTATAAACCATCAACCTAACATTATATTTCTTGTTCTCTTCAACAA

mRNA sequence

ATGGGGATCCTCCTCCCCGTCGTTCTCGCTCTCGTTGTCTCGCTCCCCTGCCCCTCAGGTCATCTCAATGCCGTTCGGAACTCAATCCCGATACGGTTTCCCCCTTTGTTTGTTTTCTACGAGTTCGGTTTCGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTAGGCTACTAACCTATTTTGCAATGGACCGTGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTTCAACAAGGCCACGACGCAAAGCTTTCGAAATGTCCTCCGTGTCGGCTGCAGCTTCTCGAGCCAAGGACGAGGGAACTTCAATCCAGGATTGTTCGTGCAAGGTGAAATTAGTGAAGCTCACATCCTCCAAAAATGGCTCATCATCTATTGTATTCTTTTTCTTGTTGGCTGTTGTTTTTTCATCTTATAAACCATCAACCTAACATTATATTTCTTGTTCTCTTCAACAA

Coding sequence (CDS)

ATGGGGATCCTCCTCCCCGTCGTTCTCGCTCTCGTTGTCTCGCTCCCCTGCCCCTCAGGTCATCTCAATGCCGTTCGGAACTCAATCCCGATACGGTTTCCCCCTTTGTTTGTTTTCTACGAGTTCGGTTTCGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTAGGCTACTAACCTATTTTGCAATGGACCGTGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTTCAACAAGGCCACGACGCAAAGCTTTCGAAATGTCCTCCGTGTCGGCTGCAGCTTCTCGAGCCAAGGACGAGGGAACTTCAATCCAGGATTGTTCGTGCAAGGTGAAATTAGTGAAGCTCACATCCTCCAAAAATGGCTCATCATCTATTGTATTCTTTTTCTTGTTGGCTGTTGTTTTTTCATCTTATAAACCATCAACCTAA

Protein sequence

MGILLPVVLALVVSLPCPSGHLNAVRNSIPIRFPPLFVFYEFGFVYGEEIPGQMVVEAFKCFDNKFRLLTYFAMDRVWSKHNLCSTALTTLFKTSCSSTRPRRKAFEMSSVSAAASRAKDEGTSIQDCSCKVKLVKLTSSKNGSSSIVFFFLLAVVFSSYKPST
Homology
[Close]
BLAST of Lsi06G000600.1 vs. TrEMBL
Match: A0A0A0LYD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561940 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 32/62 (51.61%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 5  LPVVLALVVSLPCPSGHLNAVRNSIPIRFPPLFVFYEFGFVYGEEIPGQMVVEAFKCFDN 64
          LP+ LAL V L CPSGHL+ +R   P                  EIPGQMVVE FKCFDN
Sbjct: 8  LPIALALAVLLRCPSGHLHVIRELKP----------------DTEIPGQMVVEGFKCFDN 53

Query: 65 KF 67
          KF
Sbjct: 68 KF 53

[Close]
BLAST of Lsi06G000600.1 vs. NCBI nr
Match: gi|700210918|gb|KGN66014.1| (hypothetical protein Csa_1G561940 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 32/62 (51.61%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 5  LPVVLALVVSLPCPSGHLNAVRNSIPIRFPPLFVFYEFGFVYGEEIPGQMVVEAFKCFDN 64
          LP+ LAL V L CPSGHL+ +R   P                  EIPGQMVVE FKCFDN
Sbjct: 8  LPIALALAVLLRCPSGHLHVIRELKP----------------DTEIPGQMVVEGFKCFDN 53

Query: 65 KF 67
          KF
Sbjct: 68 KF 53

The following BLAST results are available for this feature:
BLAST of Lsi06G000600.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G000600.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYD5_CUCSA3.0e-0651.61Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561940 PE=4 SV=1[more]
BLAST of Lsi06G000600.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G000600.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210918|gb|KGN66014.1|4.2e-0651.61hypothetical protein Csa_1G561940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G000600Lsi06G000600gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G000600.1Lsi06G000600.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G000600.1.three_prime_UTR.1Lsi06G000600.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G000600.1.CDS.5Lsi06G000600.1.CDS.5CDS
Lsi06G000600.1.CDS.4Lsi06G000600.1.CDS.4CDS
Lsi06G000600.1.CDS.3Lsi06G000600.1.CDS.3CDS
Lsi06G000600.1.CDS.2Lsi06G000600.1.CDS.2CDS
Lsi06G000600.1.CDS.1Lsi06G000600.1.CDS.1CDS