Lsi06G000600 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000600
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 515990 .. 519157 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATACCCCGCATCTCCATATTTAATAAATTTTATTTTATTTTAACCTAATTATTAAATATGAGTTGGGTTGAGTTGGTAAAAATTATCAACTCAATGGTTGGTTAACTTTACTAACTCAACCCAACTTTTTATCCTATCAATGACTAGCCTGACCAACATTCTGATGATGACTTTTGCGCAATCAACTCCAGTCCTTGATCAATTTCAGCCCAACCAATATTGACATTCACCTTAAACAATCAACTCGAGTAAAGACCACCCATCCACACATTGTACTAAATATTTATTACTCACACACACTAAAAAAACACAAAAATACATACTTTTTAGGTTACAAAAAATTGCACCAAATATTCATAAACTCCACCCAACTCAACTATGAACTCTAAATACAACGTTGTTAATTAAACACTAATTTAATAACACATATACACACGTTGTTAATTAAATACTAATTTAATAACACATATATTTTCAATTTTGAACCCTTGATCAAACATCTTTTCTTAACAAATGAACTTATTATGAAGCACTTTTAAAATACATTCAAAAGTTTGAAATGAACATAATAAAAAAGTTGTCTTTTTTTTTTTTAATATATAATATACAAAGTTGTTGGCCTAATTAAACTCTCAAACAAAAACTGCTAATTCCCTTTTTCACCCTTCACCTCACAAAAATCTCTACATTTTCTTCACCAATATTTTCCACCTTATGCGTTGGCCTAACTTCCAACTGCCATTCCCATCATCTCATTCATCTATATATTCACATAAATATATCATCACATTTCTTCTTAATTTTCTCACTTCCTTTCACTCCAATGGCTTCCCCAATTAGCCTCCTCCCCGTCGTTCTCGCTCTCGTTGTCTCGCTCCCCTGCCCCTCAGGTCATCTCAATGCCGTTCGGAACTCAATCCCGATACGGTTTCCCCCTTTGTTTGTTTTCTACGAGTTCGGTTTCGGTTTTTTATTTTGAAGGAGATAGAATATAATCTATTTGTTTTGTGTTTTGTATTGTGACAGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTGTGTGTTTTTTCTTCATAAGCTCTCTCTCTCCTTACGACGAGTTTCATAACTTTTCTTTCAATAACTAAGTTGTATTCGTATTTGTTATATTTACATTTTTTACCTTAGACGCTTCTGATCTGTAATCTGAATTATTCTTTGTAATAATAAATTGCTCTGTCTCTGCTCGTGAATATAGCTAACACACTATTAATAAACTACATAATTAATTTGTGTTTGTAGATATACCATGGGTGTGAAAGTGGTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCAGAGGCTACTAACCTATTTTGCAATGGACCGTGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTTCAACAAGGCCACGACGCAAAGCTTTCGAAATGTCCTCCGTGTCGGCTGCAGCTTCTCGAGCCAAGGACGAGGTAGGCCATAGGCTGCTGCTAGCTAGCTTGTGTTGGTTTTCACTTTATTTGATAGATGCATTTTTCATGCCTAAAAAAACATAGAGAAAGTGCATCTTAGTAATTGAGAAAAAAAAGAAACTAAGTTTTAGCCACTATATAAATTAATTAAATATGAAAAAAGATAGGAAAAATACTTTTGGGTTTTTTAGGTTTTGGGTCTAGCTAGTTAGTTATTAAGTTTTGAATTTGATTTCAATCTAGTTGGTAAGTTTCAAAATGTTACAATTTTACCTTTGAGATTCAAATTTTGATTCTATTTGGTCCCTAAGTTTCAAGATTTGCAATTTTAACATTGATTTTCACTAAATATTCACTTTCAGTCTTTAGCGTTAATATTTATTAATTAATTTAGGGAAATTACTATAAACAGAAAAATATCAAACTATTTACAAATATAGAAAAATTTTACTATCTATCAGTGATAGACCGCGATAGAATTCTATCGCTTTCTATTGCTCAAGCAAATAAATTCTATCGCCTGAGCGATAGAAAGCGATACAATTCTATCACGATCTATTAGTGATAGACGGTAAAAATTTTCTATATTTGTAAATAGTTTGGCTCATTCTTCTATATTTGAAAAGAGCCCATTAATTTAAAATAATTATAAAGTTAAATTTTAATTTTAATAGTGATGAAAAACCATGAAACTTAATTAATTATAATTCTTTTTAATTCTTTTAAGATAATTAATTGACATTAACACTAAAGATGCAAAGTTAGTATTTAGTTAAAAATCAAAGCTAAAAATGTATATCTTGAAACTTAGCTAGTGACCAAGTTTGAAACAAAACTCAAATCTTAAGGTAAAATTGTAACATTTTAAAACTTAAAGACTAAAGGTTTGTTTGAGGGTTGAAATGTAATCAAGATTACTGAGATCAGAGGAGTGTTGAAATGCGTGAAGTATTGAGGGTGGAACGAAAATGGGATCGTGAAACGTGAAAACGGTGGCAAGGAGGATTTAGTTAAAAACTGTTGGAACGTAATGGGTTTAATATTACAAATTGGACCCAAAACGCTCAATCCAAACATGGGTTTTGTATTACATTATGTTCCAAACTCAATCCATTACCGGCTCTCAAACAGCCCCTAAATTGAAACTAAACTCAAAATTTAAGGACTAAAAATGTAACATTCAGAAACCTTAGGGACCGAATAGAAACGACTAAACCCAAAATCTAAAGACCAAGAATGTTTTTTTTTTTTTTTTTCCAAACATATAACTTAAGTGGTCAAAATTTATATTCTCAACCAAATTTTGTGTAGAACATAACATTCAATTTTTTTTTTTTTTTAATATAGTTTAGAATGATATGATTTGTAACATCATCTTTTATTTGCCATTGTTGTTTATTGGTTTAGGGAACTTCAATCCAGGATTGTTCGTGCAAGGTGAAATTAGTGAAGCTCACATCCTCCAAAAATGGCTCATCATCTATTGTATTCTTTTTCTTGTTGGCTGTTGTTTTTTCATCTTATAAACCATCAACCTAACATTATATTTCTTGTTCTCTTCAACAA

mRNA sequence

ATGGGGATCCTCCTCCCCGTCGTTCTCGCTCTCGTTGTCTCGCTCCCCTGCCCCTCAGGTCATCTCAATGCCGTTCGGAACTCAATCCCGATACGGTTTCCCCCTTTGTTTGTTTTCTACGAGTTCGGTTTCGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTAGGCTACTAACCTATTTTGCAATGGACCGTGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTTCAACAAGGCCACGACGCAAAGCTTTCGAAATGTCCTCCGTGTCGGCTGCAGCTTCTCGAGCCAAGGACGAGGGAACTTCAATCCAGGATTGTTCGTGCAAGGTGAAATTAGTGAAGCTCACATCCTCCAAAAATGGCTCATCATCTATTGTATTCTTTTTCTTGTTGGCTGTTGTTTTTTCATCTTATAAACCATCAACCTAACATTATATTTCTTGTTCTCTTCAACAA

Coding sequence (CDS)

ATGGGGATCCTCCTCCCCGTCGTTCTCGCTCTCGTTGTCTCGCTCCCCTGCCCCTCAGGTCATCTCAATGCCGTTCGGAACTCAATCCCGATACGGTTTCCCCCTTTGTTTGTTTTCTACGAGTTCGGTTTCGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTAGGCTACTAACCTATTTTGCAATGGACCGTGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTTCAACAAGGCCACGACGCAAAGCTTTCGAAATGTCCTCCGTGTCGGCTGCAGCTTCTCGAGCCAAGGACGAGGGAACTTCAATCCAGGATTGTTCGTGCAAGGTGAAATTAGTGAAGCTCACATCCTCCAAAAATGGCTCATCATCTATTGTATTCTTTTTCTTGTTGGCTGTTGTTTTTTCATCTTATAAACCATCAACCTAA

Protein sequence

MGILLPVVLALVVSLPCPSGHLNAVRNSIPIRFPPLFVFYEFGFVYGEEIPGQMVVEAFKCFDNKFRLLTYFAMDRVWSKHNLCSTALTTLFKTSCSSTRPRRKAFEMSSVSAAASRAKDEGTSIQDCSCKVKLVKLTSSKNGSSSIVFFFLLAVVFSSYKPST
Homology
[Close]
BLAST of Lsi06G000600 vs. TrEMBL
Match: A0A0A0LYD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561940 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 32/62 (51.61%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 5  LPVVLALVVSLPCPSGHLNAVRNSIPIRFPPLFVFYEFGFVYGEEIPGQMVVEAFKCFDN 64
          LP+ LAL V L CPSGHL+ +R   P                  EIPGQMVVE FKCFDN
Sbjct: 8  LPIALALAVLLRCPSGHLHVIRELKP----------------DTEIPGQMVVEGFKCFDN 53

Query: 65 KF 67
          KF
Sbjct: 68 KF 53

[Close]
BLAST of Lsi06G000600 vs. NCBI nr
Match: gi|700210918|gb|KGN66014.1| (hypothetical protein Csa_1G561940 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 32/62 (51.61%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 5  LPVVLALVVSLPCPSGHLNAVRNSIPIRFPPLFVFYEFGFVYGEEIPGQMVVEAFKCFDN 64
          LP+ LAL V L CPSGHL+ +R   P                  EIPGQMVVE FKCFDN
Sbjct: 8  LPIALALAVLLRCPSGHLHVIRELKP----------------DTEIPGQMVVEGFKCFDN 53

Query: 65 KF 67
          KF
Sbjct: 68 KF 53

The following BLAST results are available for this feature:
BLAST of Lsi06G000600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G000600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYD5_CUCSA3.0e-0651.61Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561940 PE=4 SV=1[more]
BLAST of Lsi06G000600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G000600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210918|gb|KGN66014.1|4.2e-0651.61hypothetical protein Csa_1G561940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000600.1Lsi06G000600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G000600ClCG03G017700Watermelon (Charleston Gray)lsiwcgB364
Lsi06G000600Bhi02G001812Wax gourdlsiwgoB522
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G000600Bottle gourd (USVL1VR-Ls)lsilsiB060
Lsi06G000600Cucumber (Gy14) v1cgylsiB033
Lsi06G000600Cucumber (Gy14) v1cgylsiB101
Lsi06G000600Cucurbita maxima (Rimu)cmalsiB070
Lsi06G000600Cucurbita maxima (Rimu)cmalsiB076
Lsi06G000600Cucurbita maxima (Rimu)cmalsiB133
Lsi06G000600Cucurbita maxima (Rimu)cmalsiB142
Lsi06G000600Cucurbita maxima (Rimu)cmalsiB178
Lsi06G000600Cucurbita maxima (Rimu)cmalsiB734
Lsi06G000600Cucurbita moschata (Rifu)cmolsiB062
Lsi06G000600Cucurbita moschata (Rifu)cmolsiB122
Lsi06G000600Cucurbita moschata (Rifu)cmolsiB168
Lsi06G000600Cucurbita moschata (Rifu)cmolsiB723
Lsi06G000600Cucurbita pepo (Zucchini)cpelsiB095
Lsi06G000600Cucurbita pepo (Zucchini)cpelsiB302
Lsi06G000600Cucurbita pepo (Zucchini)cpelsiB560
Lsi06G000600Cucurbita pepo (Zucchini)cpelsiB682
Lsi06G000600Wild cucumber (PI 183967)cpilsiB059
Lsi06G000600Wild cucumber (PI 183967)cpilsiB134
Lsi06G000600Cucumber (Chinese Long) v2culsiB136
Lsi06G000600Cucumber (Chinese Long) v2culsiB058
Lsi06G000600Melon (DHL92) v3.5.1lsimeB396
Lsi06G000600Melon (DHL92) v3.5.1lsimeB416
Lsi06G000600Watermelon (Charleston Gray)lsiwcgB359
Lsi06G000600Watermelon (Charleston Gray)lsiwcgB362
Lsi06G000600Watermelon (97103) v1lsiwmB392
Lsi06G000600Watermelon (97103) v1lsiwmB396
Lsi06G000600Watermelon (97103) v1lsiwmB409
Lsi06G000600Cucumber (Gy14) v2cgyblsiB055
Lsi06G000600Melon (DHL92) v3.6.1lsimedB418
Lsi06G000600Cucumber (Chinese Long) v3cuclsiB068
Lsi06G000600Watermelon (97103) v2lsiwmbB365