Lsi06G000040.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000040.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Eukaryotic peptide chain release factor subunit
Location	chr06 : 31286 .. 32379 (-)
Sequence length	711

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGTTCCTCCAAATGGGCTTGTGTTGTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCAGAATTGATTTTGAGCCTTTCAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATATAGGAGAAGCGTCTAATTGGAAAATACTTTGAAGAGATTAGCCAGAATATAGGGAAATATGTTTTTGGTGTTGTTGAAATACTCATTGTTTGGGAAAATTTAGATATCAATAGGTACATAAAGAATGCTTCCACTGGTGAGATTGTTATAAAGCACTTGAACAAGGAATAGGAAGCCAATTAGAGCAACTTTCGAGAAAAGATGGCCTTACTGGAATGGTTTGCAAATGAGTACAAGAAGTTTGGTTGCACCCTAGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG

mRNA sequence

ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG

Coding sequence (CDS)

ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG

Protein sequence

MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKAINASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLHKFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVGSTDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSNEGSQFCKGFGGIGGILRYQLDIRSFDELSDGEEYDDSE

Homology

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BLAST of Lsi06G000040.1 vs. Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=1 SV=2)

HSP 1 Score: 330.5 bits (846), Expect = 1.5e-89
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VLG ITSAQQRLKLYN+                       
Sbjct: 50  MLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQ++INP TSQPNV+GLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRL AKILNVVDVSYGGENGFNQAI+LS+EIL+N
Sbjct: 230 SADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILAN 278

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BLAST of Lsi06G000040.1 vs. Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=1 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-89
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 48  MLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKV 107

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 108 TFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 167

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 168 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 227

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 228 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 276

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BLAST of Lsi06G000040.1 vs. Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.7e-88
Identity = 172/229 (75.11%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 49  MLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKV 108

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTE LNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 109 TIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 168

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 169 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 228

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 229 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 277

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BLAST of Lsi06G000040.1 vs. Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.3e-76
Identity = 154/229 (67.25%), Postives = 166/229 (72.49%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DEFGT SNIKSRVNR  VLG ITS QQRLKLYNK                       
Sbjct: 51  MLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKEKKV 110

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    IN SLYL +NKFHTEAL  LL  D+KFGFI MDGNG LFGTL GNTREVLH
Sbjct: 111 NIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVLH 170

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRK  + A Q FI  T  +PNV GL+L G
Sbjct: 171 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--TNDRPNVTGLVLAG 230

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFD RLQ KIL +VDVSYGGENGFNQAI+LS+E+LSN
Sbjct: 231 SADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSN 277

[Close]

BLAST of Lsi06G000040.1 vs. Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.7e-75
Identity = 151/229 (65.94%), Postives = 167/229 (72.93%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DEFGT SNIKSRVNR  VLG ITS Q RLKLY K                       
Sbjct: 51  MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKV 110

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    IN SLYL +NKFHTEAL  LL  D+KFGFI MDGNG LFGTL GNTREVLH
Sbjct: 111 NIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLH 170

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRK  ++ATQ FI  T  +PN+AGLIL G
Sbjct: 171 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFI--TNDKPNIAGLILAG 230

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQ+K++ +VDVSYGGENGFNQAI+L++E L N
Sbjct: 231 SADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQN 277

[Close]

BLAST of Lsi06G000040.1 vs. TrEMBL
Match: E5GB47_CUCME (Eukaryotic peptide chain release factor subunit OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. TrEMBL
Match: A0A0A0KF54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089230 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. TrEMBL
Match: A0A0A0KZH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293340 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. TrEMBL
Match: A0A072UM30_MEDTR (Eukaryotic peptide chain release factor subunit 1-3 OS=Medicago truncatula GN=MTR_6g478120 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. TrEMBL
Match: A0A067JTC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23058 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPSNGLVLYTGTIVTDDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. TAIR10
Match: AT5G47880.1 (AT5G47880.1 eukaryotic release factor 1-1)

HSP 1 Score: 330.5 bits (846), Expect = 8.6e-91
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VLG ITSAQQRLKLYN+                       
Sbjct: 50  MLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQ++INP TSQPNV+GLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRL AKILNVVDVSYGGENGFNQAI+LS+EIL+N
Sbjct: 230 SADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILAN 278

[Close]

BLAST of Lsi06G000040.1 vs. TAIR10
Match: AT1G12920.1 (AT1G12920.1 eukaryotic release factor 1-2)

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 48  MLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKV 107

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 108 TFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 167

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 168 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 227

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 228 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 276

[Close]

BLAST of Lsi06G000040.1 vs. TAIR10
Match: AT3G26618.1 (AT3G26618.1 eukaryotic release factor 1-3)

HSP 1 Score: 325.9 bits (834), Expect = 2.1e-89
Identity = 172/229 (75.11%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 49  MLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKV 108

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTE LNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 109 TIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 168

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 169 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 228

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 229 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 277

[Close]

BLAST of Lsi06G000040.1 vs. NCBI nr
Match: gi|449445606|ref|XP_004140563.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. NCBI nr
Match: gi|659119950|ref|XP_008459930.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. NCBI nr
Match: gi|659068972|ref|XP_008447536.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. NCBI nr
Match: gi|449448665|ref|XP_004142086.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]

BLAST of Lsi06G000040.1 vs. NCBI nr
Match: gi|225458331|ref|XP_002283027.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera])

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 1


Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

The following BLAST results are available for this feature:

BLAST of Lsi06G000040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF1X_ARATH	1.5e-89	75.98	Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=E...	[more]
ERF1Y_ARATH	2.0e-89	75.98	Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=E...	[more]
ERF1Z_ARATH	3.7e-88	75.11	Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=E...	[more]
ERF1_POLMI	7.3e-76	67.25	Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis ...	[more]
ERF1_DROME	4.7e-75	65.94	Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=...	[more]

BLAST of Lsi06G000040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB47_CUCME	1.2e-90	79.48	Eukaryotic peptide chain release factor subunit OS=Cucumis melo subsp. melo PE=4...	[more]
A0A0A0KF54_CUCSA	1.2e-90	79.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089230 PE=4 SV=1	[more]
A0A0A0KZH4_CUCSA	1.2e-90	79.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293340 PE=4 SV=1	[more]
A0A072UM30_MEDTR	2.8e-90	79.04	Eukaryotic peptide chain release factor subunit 1-3 OS=Medicago truncatula GN=MT...	[more]
A0A067JTC7_JATCU	2.8e-90	79.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23058 PE=4 SV=1	[more]

BLAST of Lsi06G000040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47880.1	8.6e-91	75.98	eukaryotic release factor 1-1	[more]
AT1G12920.1	1.1e-90	75.98	eukaryotic release factor 1-2	[more]
AT3G26618.1	2.1e-89	75.11	eukaryotic release factor 1-3	[more]

BLAST of Lsi06G000040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445606\|ref\|XP_004140563.1\|	1.8e-90	79.48	PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sat...	[more]
gi\|659119950\|ref\|XP_008459930.1\|	1.8e-90	79.48	PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis mel...	[more]
gi\|659068972\|ref\|XP_008447536.1\|	1.8e-90	79.48	PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis melo]	[more]
gi\|449448665\|ref\|XP_004142086.1\|	1.8e-90	79.48	PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis sativus]	[more]
gi\|225458331\|ref\|XP_002283027.1\|	4.0e-90	79.04	PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

Vocabulary: **INTERPRO**
Term	Definition
IPR024049	Release_factor_eRF1/aRF1_N
IPR005142	eRF1_3
IPR005141	eRF1_2
IPR004403	Peptide_chain-rel_eRF1/aRF1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0006449	regulation of translational termination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
cellular_component	GO:0018444	translation release factor complex
molecular_function	GO:0016149	translation release factor activity, codon specific

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G000040	Lsi06G000040	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G000040.1.CDS.3	Lsi06G000040.1.CDS.3	CDS
Lsi06G000040.1.CDS.2	Lsi06G000040.1.CDS.2	CDS
Lsi06G000040.1.CDS.1	Lsi06G000040.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G000040.1	Lsi06G000040.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004403	Peptide chain release factor eRF1/aRF1	PANTHER	PTHR10113	PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1	coord: 1..198 score: 1.0E
IPR005141	eRF1 domain 2	PFAM	PF03464	eRF1_2	coord: 64..197 score: 4.5
IPR005142	eRF1 domain 3	PFAM	PF03465	eRF1_3	coord: 197..218 score: 3.
IPR024049	Peptide Chain Release Factor eRF1/aRF1, N-terminal	GENE3D	G3DSA:3.30.960.10		coord: 1..44 score: 1.8
IPR024049	Peptide Chain Release Factor eRF1/aRF1, N-terminal	unknown	SSF55481	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	coord: 1..60 score: 8.11
None	No IPR available	GENE3D	G3DSA:3.30.420.60		coord: 62..197 score: 1.9
None	No IPR available	PANTHER	PTHR10113:SF8	EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-1-RELATED	coord: 1..198 score: 1.0E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 62..196 score: 9.59