Lsi06G000040 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000040
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionEukaryotic peptide chain release factor subunit
Locationchr06 : 31286 .. 32379 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGTTCCTCCAAATGGGCTTGTGTTGTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCAGAATTGATTTTGAGCCTTTCAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATATAGGAGAAGCGTCTAATTGGAAAATACTTTGAAGAGATTAGCCAGAATATAGGGAAATATGTTTTTGGTGTTGTTGAAATACTCATTGTTTGGGAAAATTTAGATATCAATAGGTACATAAAGAATGCTTCCACTGGTGAGATTGTTATAAAGCACTTGAACAAGGAATAGGAAGCCAATTAGAGCAACTTTCGAGAAAAGATGGCCTTACTGGAATGGTTTGCAAATGAGTACAAGAAGTTTGGTTGCACCCTAGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG

mRNA sequence

ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG

Coding sequence (CDS)

ATGCTTGGTGATGAATTTGGAACTACTTCGAACATTAAGAGCAGGGTAAATCGTCAATATGTTTTGGGCACTATCACATCTGCTCAGCAGAGGCTCAAGCTATATAACAAGGCTATAAATGCATCTCTTTATCTCAACAACAACAAGTTCCACACGGAAGCCCTAAATGAACTGTTAGAATCTGATGACAAATTTGGCTTCATTGACATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTGCACAAATTTAGTGTCAACCTTCCTAAGAAACATGGAAGAGGTGGTCAGTTAGCACTTCGGTTTGCTCGTCTTCGAATGGAGAAGCGACACAGTTATGTGAGGAAAACAACAAAGCTTGCAACCCAGTTCTTTATTAATCCTACCACTAGTCAACCTAATGTTGCAGGTTTGATACTGGTTGGATCAACTGACTTCAAAACGGAGCTCAGTCAATCCGACATGTTCGATCCTCGTCTCCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAGGCTATTCAATTGTCATCCGAGATCTTGTCTAATGAAGGATCACAGTTCTGCAAAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGATGATTCTGAATAG

Protein sequence

MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKAINASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLHKFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVGSTDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSNEGSQFCKGFGGIGGILRYQLDIRSFDELSDGEEYDDSE
Homology
[Close]
BLAST of Lsi06G000040 vs. Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=1 SV=2)

HSP 1 Score: 330.5 bits (846), Expect = 1.5e-89
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VLG ITSAQQRLKLYN+                       
Sbjct: 50  MLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQ++INP TSQPNV+GLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRL AKILNVVDVSYGGENGFNQAI+LS+EIL+N
Sbjct: 230 SADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILAN 278

[Close]
BLAST of Lsi06G000040 vs. Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=1 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-89
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 48  MLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKV 107

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 108 TFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 167

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 168 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 227

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 228 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 276

[Close]
BLAST of Lsi06G000040 vs. Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.7e-88
Identity = 172/229 (75.11%), Postives = 184/229 (80.35%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 49  MLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKV 108

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTE LNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 109 TIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 168

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 169 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 228

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 229 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 277

[Close]
BLAST of Lsi06G000040 vs. Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.3e-76
Identity = 154/229 (67.25%), Postives = 166/229 (72.49%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DEFGT SNIKSRVNR  VLG ITS QQRLKLYNK                       
Sbjct: 51  MLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKEKKV 110

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    IN SLYL +NKFHTEAL  LL  D+KFGFI MDGNG LFGTL GNTREVLH
Sbjct: 111 NIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVLH 170

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRK  + A Q FI  T  +PNV GL+L G
Sbjct: 171 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--TNDRPNVTGLVLAG 230

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFD RLQ KIL +VDVSYGGENGFNQAI+LS+E+LSN
Sbjct: 231 SADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSN 277

[Close]
BLAST of Lsi06G000040 vs. Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.7e-75
Identity = 151/229 (65.94%), Postives = 167/229 (72.93%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DEFGT SNIKSRVNR  VLG ITS Q RLKLY K                       
Sbjct: 51  MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKV 110

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    IN SLYL +NKFHTEAL  LL  D+KFGFI MDGNG LFGTL GNTREVLH
Sbjct: 111 NIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLH 170

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRK  ++ATQ FI  T  +PN+AGLIL G
Sbjct: 171 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFI--TNDKPNIAGLILAG 230

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQ+K++ +VDVSYGGENGFNQAI+L++E L N
Sbjct: 231 SADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQN 277

[Close]
BLAST of Lsi06G000040 vs. TrEMBL
Match: E5GB47_CUCME (Eukaryotic peptide chain release factor subunit OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. TrEMBL
Match: A0A0A0KF54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089230 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. TrEMBL
Match: A0A0A0KZH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293340 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.2e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. TrEMBL
Match: A0A072UM30_MEDTR (Eukaryotic peptide chain release factor subunit 1-3 OS=Medicago truncatula GN=MTR_6g478120 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. TrEMBL
Match: A0A067JTC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23058 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.8e-90
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPSNGLVLYTGTIVTDDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. TAIR10
Match: AT5G47880.1 (AT5G47880.1 eukaryotic release factor 1-1)

HSP 1 Score: 330.5 bits (846), Expect = 8.6e-91
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VLG ITSAQQRLKLYN+                       
Sbjct: 50  MLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQ++INP TSQPNV+GLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRL AKILNVVDVSYGGENGFNQAI+LS+EIL+N
Sbjct: 230 SADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILAN 278

[Close]
BLAST of Lsi06G000040 vs. TAIR10
Match: AT1G12920.1 (AT1G12920.1 eukaryotic release factor 1-2)

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 174/229 (75.98%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 48  MLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKV 107

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 108 TFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 167

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 168 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 227

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 228 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 276

[Close]
BLAST of Lsi06G000040 vs. TAIR10
Match: AT3G26618.1 (AT3G26618.1 eukaryotic release factor 1-3)

HSP 1 Score: 325.9 bits (834), Expect = 2.1e-89
Identity = 172/229 (75.11%), Postives = 184/229 (80.35%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           ML DE+GT SNIKSRVNRQ VL  ITSAQQRLKLYNK                       
Sbjct: 49  MLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKV 108

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTE LNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 109 TIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 168

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQF+INP TSQPNV+GLIL G
Sbjct: 169 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAG 228

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAI+LS+EILSN
Sbjct: 229 SADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSN 277

[Close]
BLAST of Lsi06G000040 vs. NCBI nr
Match: gi|449445606|ref|XP_004140563.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. NCBI nr
Match: gi|659119950|ref|XP_008459930.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. NCBI nr
Match: gi|659068972|ref|XP_008447536.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. NCBI nr
Match: gi|449448665|ref|XP_004142086.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 182/229 (79.48%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KFSV+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

[Close]
BLAST of Lsi06G000040 vs. NCBI nr
Match: gi|225458331|ref|XP_002283027.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera])

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 181/229 (79.04%), Postives = 187/229 (81.66%), Query Frame = 1 

Query: 1   MLGDEFGTTSNIKSRVNRQYVLGTITSAQQRLKLYNKA---------------------- 60
           MLGDEFGT SNIKSRVNRQ VLG ITSAQQRLKLYNK                       
Sbjct: 50  MLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKV 109

Query: 61  ---------INASLYLNNNKFHTEALNELLESDDKFGFIDMDGNGTLFGTLSGNTREVLH 120
                    INASLYL +NKFHTEALNELLESDDKFGFI MDGNGTLFGTLSGNTREVLH
Sbjct: 110 TIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 169

Query: 121 KFSVNLPKKHGRGGQLALRFARLRMEKRHSYVRKTTKLATQFFINPTTSQPNVAGLILVG 180
           KF+V+LPKKHGRGGQ ALRFARLRMEKRH+YVRKT +LATQFFINP TSQPNVAGLIL G
Sbjct: 170 KFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAG 229

Query: 181 STDFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIQLSSEILSN 199
           S DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAI+LSSEILSN
Sbjct: 230 SADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSN 278

The following BLAST results are available for this feature:
BLAST of Lsi06G000040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERF1X_ARATH1.5e-8975.98Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=E... [more]
ERF1Y_ARATH2.0e-8975.98Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=E... [more]
ERF1Z_ARATH3.7e-8875.11Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=E... [more]
ERF1_POLMI7.3e-7667.25Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis ... [more]
ERF1_DROME4.7e-7565.94Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=... [more]
BLAST of Lsi06G000040 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB47_CUCME1.2e-9079.48Eukaryotic peptide chain release factor subunit OS=Cucumis melo subsp. melo PE=4... [more]
A0A0A0KF54_CUCSA1.2e-9079.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089230 PE=4 SV=1[more]
A0A0A0KZH4_CUCSA1.2e-9079.48Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293340 PE=4 SV=1[more]
A0A072UM30_MEDTR2.8e-9079.04Eukaryotic peptide chain release factor subunit 1-3 OS=Medicago truncatula GN=MT... [more]
A0A067JTC7_JATCU2.8e-9079.04Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23058 PE=4 SV=1[more]
BLAST of Lsi06G000040 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47880.18.6e-9175.98 eukaryotic release factor 1-1[more]
AT1G12920.11.1e-9075.98 eukaryotic release factor 1-2[more]
AT3G26618.12.1e-8975.11 eukaryotic release factor 1-3[more]
BLAST of Lsi06G000040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445606|ref|XP_004140563.1|1.8e-9079.48PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sat... [more]
gi|659119950|ref|XP_008459930.1|1.8e-9079.48PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis mel... [more]
gi|659068972|ref|XP_008447536.1|1.8e-9079.48PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis melo][more]
gi|449448665|ref|XP_004142086.1|1.8e-9079.48PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Cucumis sativus][more]
gi|225458331|ref|XP_002283027.1|4.0e-9079.04PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0016149translation release factor activity, codon specific
Vocabulary: INTERPRO
TermDefinition
IPR024049Release_factor_eRF1/aRF1_N
IPR005142eRF1_3
IPR005141eRF1_2
IPR004403Peptide_chain-rel_eRF1/aRF1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0006449 regulation of translational termination
biological_process GO:0006415 translational termination
cellular_component GO:0005840 ribosome
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016149 translation release factor activity, codon specific
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000040.1Lsi06G000040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004403Peptide chain release factor eRF1/aRF1PANTHERPTHR10113PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1coord: 1..198
score: 1.0E
IPR005141eRF1 domain 2PFAMPF03464eRF1_2coord: 64..197
score: 4.5
IPR005142eRF1 domain 3PFAMPF03465eRF1_3coord: 197..218
score: 3.
IPR024049Peptide Chain Release Factor eRF1/aRF1, N-terminalGENE3DG3DSA:3.30.960.10coord: 1..44
score: 1.8
IPR024049Peptide Chain Release Factor eRF1/aRF1, N-terminalunknownSSF55481N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1coord: 1..60
score: 8.11
NoneNo IPR availableGENE3DG3DSA:3.30.420.60coord: 62..197
score: 1.9
NoneNo IPR availablePANTHERPTHR10113:SF8EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-1-RELATEDcoord: 1..198
score: 1.0E
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 62..196
score: 9.59

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G000040Watermelon (97103) v2lsiwmbB365
Lsi06G000040Wax gourdlsiwgoB522
Lsi06G000040Cucurbita moschata (Rifu)cmolsiB122
Lsi06G000040Wild cucumber (PI 183967)cpilsiB067
Lsi06G000040Melon (DHL92) v3.5.1lsimeB409
Lsi06G000040Watermelon (Charleston Gray)lsiwcgB364
Lsi06G000040Watermelon (97103) v1lsiwmB396
Lsi06G000040Cucumber (Gy14) v2cgyblsiB066
Lsi06G000040Melon (DHL92) v3.6.1lsimedB430
Lsi06G000040Cucumber (Chinese Long) v3cuclsiB079