Lsi05G010780.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G010780.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Plant self-incompatibility protein S1 family
Location	chr05 : 18367814 .. 18368757 (-)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGAGATTAAAATTTTCCATATAAAAACTTCATATGATTATATATAAATGGTTCATATTCAAGCTTGAAAAATGAAAAACATAAAAAAAAAAATTCTTCAAAGCCAAAAATGAAAGCTATGAATAGTGTTTGTGCGATTTTGCTATTTGTGATTGCATCAACTTGTAATGTCAAAACTTGTTTAGCAGCATATTCCAAGAACGACCAAGTTCCTGGATCATCTTGGAAAGTCACGATTCTTAACCATCAGAAATATGCAACTCTAACGGTTCATTGCAAGTCCAAAGACAATGATTTAGGTAAGTGTACGGATTCTCAATTTTTTTTCTTTTAGTTCAACAACATGTCAATGGAGATTTTTTAAAGTTGTGTTCATCAATATTTGAGAGTGACTTTGAAATTGTTAAATCACGTTTGTCATGTTCAAAATCATTTTAGAACACATCTTTAATCACTCAAAATTAATTTAATATTTCATATTACACTTTTCATATCACAAAACTAATTTTGAGTGATTAAAAGCATATCTAGGAGTGATTTTAAAAATGTCAAATTTGATTATAACCATTTCAGAATCACTCTTAAATAGGCGTAATTATGGATATATATTGATTTTTTTTTCTTTATATTGAAATTTTGATCCCCATACTAAACTAAAAGTTCTTAAATAGGCGTGCATGTCCTTAACTTCAAAGGCGTATATGACTGGCAATTCAAGGAGAATTTGTTGCAGACAACATTGTTTTGGTGCAACTTTAATAGCAGCAAATATGGGCATGCTTCGTTCGAGGTCTTCTGGCCAGAGAACGGGACGTGGCTTTCCGATCGTTGCAACGATAGAAACTGTATTTGGGTTGCTGATGAAAAGGGTTTTTCCTTGTTTAATATTTCTCAACAAAATTACGAGTTCCAACATCCGTGGACGCCTGGTAGCTAA

mRNA sequence

ATGGAAACATATTCCAAGAACGACCAAGTTCCTGGATCATCTTGGAAAGTCACGATTCTTAACCATCAGAAATATGCAACTCTAACGGTTCATTGCAAGTCCAAAGACAATGATTTAGGCGTGCATGTCCTTAACTTCAAAGGCGTATATGACTGGCAATTCAAGGAGAATTTGTTGCAGACAACATTGTTTTGGTGCAACTTTAATAGCAGCAAATATGGGCATGCTTCGTTCGAGGTCTTCTGGCCAGAGAACGGGACGTGGCTTTCCGATCGTTGCAACGATAGAAACTGTATTTGGGTTGCTGATGAAAAGGGTTTTTCCTTGTTTAATATTTCTCAACAAAATTACGAGTTCCAACATCCGTGGACGCCTGGTAGCTAA

Coding sequence (CDS)

ATGGAAACATATTCCAAGAACGACCAAGTTCCTGGATCATCTTGGAAAGTCACGATTCTTAACCATCAGAAATATGCAACTCTAACGGTTCATTGCAAGTCCAAAGACAATGATTTAGGCGTGCATGTCCTTAACTTCAAAGGCGTATATGACTGGCAATTCAAGGAGAATTTGTTGCAGACAACATTGTTTTGGTGCAACTTTAATAGCAGCAAATATGGGCATGCTTCGTTCGAGGTCTTCTGGCCAGAGAACGGGACGTGGCTTTCCGATCGTTGCAACGATAGAAACTGTATTTGGGTTGCTGATGAAAAGGGTTTTTCCTTGTTTAATATTTCTCAACAAAATTACGAGTTCCAACATCCGTGGACGCCTGGTAGCTAA

Protein sequence

METYSKNDQVPGSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPWTPGS

Homology

[Close]

BLAST of Lsi05G010780.1 vs. TrEMBL
Match: A0A0A0KA40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 73/117 (62.39%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 9   QVPGSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGV-YDWQFKENLLQTTLFWCN 68
           Q+P + W VTI+N+Q  A+L VHCKSKD+DLGVHV+  +G  Y W FKEN LQTT +WC+
Sbjct: 32  QLPLTDWTVTIINYQINASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCD 91

Query: 69  FNSSKYGHASFEVFWPENGTWLSDRC-NDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
           F  SK GHASFEVFWPE GTW SDRC ++ NC+WVA   GFSL N   +  EFQHPW
Sbjct: 92  F-QSKLGHASFEVFWPERGTWFSDRCGSNSNCVWVAAHDGFSLLNAPAKTLEFQHPW 147

[Close]

BLAST of Lsi05G010780.1 vs. TrEMBL
Match: M5VN50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 27  TLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSSKYGHASFEVFWPEN- 86
           TL  HCKSKD+DLG+  +     ++W FKEN   TTLFWCN +++ + HA+F+VFW E+ 
Sbjct: 6   TLVAHCKSKDDDLGIRDVLPGNEFNWGFKENFGGTTLFWCNIHNN-HQHANFQVFWHEDE 65

Query: 87  --GTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPWTPG 127
              +WL  RCN + C WVA + G  + N  +   E QH W PG
Sbjct: 66  SKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQWEPG 107

[Close]

BLAST of Lsi05G010780.1 vs. TrEMBL
Match: A0A061DVJ1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 14  SWKVTILN---HQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNS 73
           +W +  +N   H+K   L +HCKS DNDLG+H L     ++W+FK  +L  TLFWC + +
Sbjct: 42  TWHIHAVNGMSHEKI--LFLHCKSGDNDLGIHNLTAGTEFNWKFKPQILGKTLFWC-YMA 101

Query: 74  SKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPWTPG 127
               HASF+VFW +N   L  RCN +NCIW A + G  L NI +   EF+H W PG
Sbjct: 102 WGNVHASFKVFWDDND--LFYRCNWKNCIWTAKDDGVYLKNIPENYDEFRHKWEPG 152

[Close]

BLAST of Lsi05G010780.1 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 10  VPGSSWKVTILNH-QKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNF 69
           +P  +W V ++N+     TL VHCKSKD+DLG H L     + W+FKEN  QTTLFWC  
Sbjct: 30  IPTKTWHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFAWKFKENFFQTTLFWCYL 89

Query: 70  NSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
                    F VFW E+  +   RC  +NCIW+A  +G  L NI + + E  H W
Sbjct: 90  KKQDKFCNIFNVFWKED--FFQFRCRYKNCIWIAKVEGIYLKNIPEGHDELWHEW 142

[Close]

BLAST of Lsi05G010780.1 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 13  SSWKVTILNHQKYA-TLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSS 72
           + W V ++N+     TL  HCKSKD+DLG   L     ++W FKEN   TTL+WC + S+
Sbjct: 17  NKWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWC-YMST 76

Query: 73  KYGHASFEVFWPE-NGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
              HA+ +VFW E + +WL  RCN ++CIW+A + G  +  I +   EF H W
Sbjct: 77  DQKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIPENRDEFSHKW 128

[Close]

BLAST of Lsi05G010780.1 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 92.0 bits (227), Expect = 2.8e-19
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 13  SSWKVTILNHQKYA-TLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSS 72
           S W+VT++N      TL +HCKSK++DLG   L F+  + W F EN+L +T FWC  N  
Sbjct: 39  SEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKD 98

Query: 73  KYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPWTPG 127
             GH +  VFW +    L  RC  +NCIW A   G  L+N +         W  G
Sbjct: 99  N-GHMNVNVFWDD--VILFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEVG 150

[Close]

BLAST of Lsi05G010780.1 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-19
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1


Query: 2   ETYSKNDQVPG-SSWKVTILNHQKYA-TLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLL 61
           +T +++  VP  S W+VT+ N      TL +HCKSK+NDLG   L F   + W F EN+L
Sbjct: 27  DTTTRDIVVPKISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENML 86

Query: 62  QTTLFWCNFNSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEF 121
            +TLFWC + S   GH + +VFW +    L  RC+ +NC+W A   G  L+N +      
Sbjct: 87  HSTLFWC-YMSKDDGHMNVKVFWDD--VILFHRCDWKNCVWTAKNDGLYLWNSAIGEDVL 146

Query: 122 QHPWTPG 127
              W  G
Sbjct: 147 SEKWKSG 150

[Close]

BLAST of Lsi05G010780.1 vs. TAIR10
Match: AT5G06020.1 (AT5G06020.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 2   ETYSKNDQ---VPGSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENL 61
           ET+ ++ +   + G   ++T+ N+  Y  L +HCKSKD+DLG H+     +Y W+F  N 
Sbjct: 31  ETFQQDGEPFPIRGPLTRITVKNNNDYL-LGIHCKSKDDDLGFHIHKEGELYGWKFHVNF 90

Query: 62  LQTTLFWCNFNSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNIS 114
             +TL++C F+  +     F++   E   +   RC  RNC W A  K  SL+  S
Sbjct: 91  QNSTLYFCGFSQGQDNKGVFDIDRAERDFY---RC--RNCTWNA--KKDSLYGYS 137

[Close]

BLAST of Lsi05G010780.1 vs. TAIR10
Match: AT5G06030.1 (AT5G06030.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1


Query: 12  GSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSS 71
           G   +VTI N+  Y  L +HCKS+D+DLG H+L    ++ W+F  N   +TL +C F+  
Sbjct: 43  GHLTRVTIQNYNDYL-LAIHCKSRDDDLGFHILAKGELFGWKFHVNFRYSTLCFCGFSQR 102

Query: 72  KYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGF 108
           +     F ++      +   RC   NC W A++ GF
Sbjct: 103 QINKGVFIIYVASRDFY---RC--ANCTWKAEKDGF 132

[Close]

BLAST of Lsi05G010780.1 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 35/120 (29.17%), Postives = 53/120 (44.17%), Query Frame = 1


Query: 5   SKNDQVPGSSWKVTILNHQ-KYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTL 64
           S N   P S   V I N      TL  HCKSKD+DLG   L     + + F       TL
Sbjct: 38  STNSVFPTSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTL 97

Query: 65  FWCNFNSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
           ++C+F+     H SF+++     +   ++C    C+W     G   FN   + ++  +PW
Sbjct: 98  YFCSFSWPNESH-SFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Lsi05G010780.1 vs. NCBI nr
Match: gi|659117571|ref|XP_008458671.1| (PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 8.6e-39
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = 1


Query: 9   QVPGSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGV-YDWQFKENLLQTTLFWCN 68
           Q+P + W+VTI+N+Q  A+L VHCKSKD+DLGVHV+  +G  Y W FKEN LQTT FWCN
Sbjct: 32  QLPLTDWQVTIINYQINASLEVHCKSKDDDLGVHVIQNEGERYSWGFKENWLQTTKFWCN 91

Query: 69  FNSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
           F S + GHASFEVFWPE GTWLSDRC++ NC+WVA   GFSL N   +  EFQHPW
Sbjct: 92  FQS-RLGHASFEVFWPETGTWLSDRCSNSNCVWVASNDGFSLLNGPAKTLEFQHPW 146

[Close]

BLAST of Lsi05G010780.1 vs. NCBI nr
Match: gi|778709234|ref|XP_011656368.1| (PREDICTED: uncharacterized protein LOC105435729 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 3.0e-36
Identity = 73/117 (62.39%), Postives = 87/117 (74.36%), Query Frame = 1


Query: 9   QVPGSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGV-YDWQFKENLLQTTLFWCN 68
           Q+P + W VTI+N+Q  A+L VHCKSKD+DLGVHV+  +G  Y W FKEN LQTT +WC+
Sbjct: 32  QLPLTDWTVTIINYQINASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCD 91

Query: 69  FNSSKYGHASFEVFWPENGTWLSDRC-NDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
           F  SK GHASFEVFWPE GTW SDRC ++ NC+WVA   GFSL N   +  EFQHPW
Sbjct: 92  F-QSKLGHASFEVFWPERGTWFSDRCGSNSNCVWVAAHDGFSLLNAPAKTLEFQHPW 147

[Close]

BLAST of Lsi05G010780.1 vs. NCBI nr
Match: gi|659125766|ref|XP_008462850.1| (PREDICTED: uncharacterized protein LOC103501130 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-30
Identity = 62/112 (55.36%), Postives = 72/112 (64.29%), Query Frame = 1


Query: 12  GSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSS 71
           GS W V+I N QK   L  HCKSKD+DLG  +++  G Y W FKEN  QTTLFWC+F SS
Sbjct: 36  GSKWVVSIHNFQKNDLLLAHCKSKDDDLGAQIIDINGQYSWTFKENFWQTTLFWCDF-SS 95

Query: 72  KYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
             GHASF+VFWPE G WL  RC+  NC W A   GF L NI +  +E  H W
Sbjct: 96  LNGHASFQVFWPEKGDWLEYRCDHGNCTWAATNDGFFLANIPEGRFELMHYW 146

[Close]

BLAST of Lsi05G010780.1 vs. NCBI nr
Match: gi|449437310|ref|XP_004136435.1| (PREDICTED: uncharacterized protein LOC101208617 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-28
Identity = 60/118 (50.85%), Postives = 73/118 (61.86%), Query Frame = 1


Query: 9   QVPGSSWKVTILNHQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNF 68
           +VP SSWKV ILN     +L + CKSKD+DLG   L  K  + W FKENL QTTL+WC  
Sbjct: 27  EVPLSSWKVNILNEMTKDSLFIRCKSKDDDLGAQNLGVKQQFSWSFKENLWQTTLYWCYM 86

Query: 69  NSSKYGHASFEVFWPENGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPWTPG 127
           +++K  HASF V+WPE   WL+ RC  RNCIW A + G  L   +   YE  H W PG
Sbjct: 87  HNAK-SHASFNVYWPERSGWLAFRCQLRNCIWSARDDGIYLKTNTHNTYELIHTWEPG 143

[Close]

BLAST of Lsi05G010780.1 vs. NCBI nr
Match: gi|659093660|ref|XP_008447647.1| (PREDICTED: uncharacterized protein LOC103490054 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 17  VTILNHQKYATLTVHCKSKDNDLGVHVLNFKGVYDWQFKENLLQTTLFWCNFNSSKYGHA 76
           +TI+N Q   TL VHCKSKD+DLG H+++    Y+W+F+EN   TTLFWCNF  +K+ HA
Sbjct: 3   ITIMNWQSNDTLLVHCKSKDDDLGEHIIDMGKEYEWKFRENFSGTTLFWCNFR-NKHKHA 62

Query: 77  SFEVFWPE--NGTWLSDRCNDRNCIWVADEKGFSLFNISQQNYEFQHPW 124
           +FEVFW E  + +WL D C D NC+W     GF L++ SQ  +EF H W
Sbjct: 63  TFEVFWRESRSKSWLEDHCKDSNCLWTVKSTGFYLYDSSQNKFEFIHEW 110

The following BLAST results are available for this feature:

BLAST of Lsi05G010780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G010780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA40_CUCSA	2.1e-36	62.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1	[more]
M5VN50_PRUPE	1.1e-19	45.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1	[more]
A0A061DVJ1_THECC	3.1e-19	44.83	S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1	[more]
V4TTV3_9ROSI	1.2e-18	42.61	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
M5VWE5_PRUPE	9.9e-18	41.59	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S...	[more]

BLAST of Lsi05G010780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16295.1	2.8e-19	39.13	S-protein homologue 1	[more]
AT4G29035.1	3.6e-19	38.58	Plant self-incompatibility protein S1 family	[more]
AT5G06020.1	2.1e-11	33.04	Plant self-incompatibility protein S1 family	[more]
AT5G06030.1	4.7e-11	34.38	Plant self-incompatibility protein S1 family	[more]
AT4G16195.1	1.4e-10	29.17	Plant self-incompatibility protein S1 family	[more]

BLAST of Lsi05G010780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117571\|ref\|XP_008458671.1\|	8.6e-39	64.66	PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo]	[more]
gi\|778709234\|ref\|XP_011656368.1\|	3.0e-36	62.39	PREDICTED: uncharacterized protein LOC105435729 [Cucumis sativus]	[more]
gi\|659125766\|ref\|XP_008462850.1\|	1.9e-30	55.36	PREDICTED: uncharacterized protein LOC103501130 [Cucumis melo]	[more]
gi\|449437310\|ref\|XP_004136435.1\|	5.2e-28	50.85	PREDICTED: uncharacterized protein LOC101208617 [Cucumis sativus]	[more]
gi\|659093660\|ref\|XP_008447647.1\|	1.2e-27	51.38	PREDICTED: uncharacterized protein LOC103490054 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G010780	Lsi05G010780	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G010780.1.CDS.3	Lsi05G010780.1.CDS.3	CDS
Lsi05G010780.1.CDS.2	Lsi05G010780.1.CDS.2	CDS
Lsi05G010780.1.CDS.1	Lsi05G010780.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G010780.1	Lsi05G010780.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 17..123 score: 5.3
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 4..125 score: 2.4
None	No IPR available	PANTHER	PTHR31232:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATED	coord: 4..125 score: 2.4