Lsi05G008470.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G008470.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 13896235 .. 13896857 (+)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGGTCTTGTATACATGTATAAGAGTAATGAGTTTGATCCAATTCTGTTGAAACACTCACTTTATGTAAATGGACTTTTGAGGTATTTGCTTAGTAAATTTTGCATTTCAAATGGTGTTTATTTTGTTTATTTTTTTTTATCTGTTGGGCTTGTTTAAGTTGTGGAAGTTGTTGTTGTTTGTAGGCTTTGATCTTTCCTTCTCTTTCTTGGAACTTCAAATTTTATAAGCTGAAAGAGTTATGGTGGATTGATGATTCAAAAGAAAACTTCAATGTCAATCCATTGATTGCCTTCCTCAAATTGTGTCCTGCTTTAGAACGTCTCTTCATTACGGTATTTCATTTAACATTTCTCGAAAGTTTTAATATACAGATGAGAACTTGTTTGAAATGACTTTTCAAGTTGAATATGAATGTATTGATAACCACTATAAGTTTGTGTAAATTTTACTGACTATGTGCAGTTCAATCCAAAAAGTTACTGCATTTCGAGCACTGATGCATTTTTAAGAACATGAATAGAGAAGTTCAATTCGAGCAGCTCAAAATTGTGATCTTGAAGGGAATTACAGGCCAGGAGGATGAAATATCATCAAAAGAGCAACAAAGGATTTTAGAGTGA

mRNA sequence

CAAGGTCTTGTATACATGTATAAGAGTAATGAGTTTGATCCAATTCTGTTGAAACACTCACTTTATGTAAATGGACTTTTGAGAGAAGTTCAATTCGAGCAGCTCAAAATTGTGATCTTGAAGGGAATTACAGGCCAGGAGGATGAAATATCATCAAAAGAGCAACAAAGGATTTTAGAGTGA

Coding sequence (CDS)

CAAGGTCTTGTATACATGTATAAGAGTAATGAGTTTGATCCAATTCTGTTGAAACACTCACTTTATGTAAATGGACTTTTGAGAGAAGTTCAATTCGAGCAGCTCAAAATTGTGATCTTGAAGGGAATTACAGGCCAGGAGGATGAAATATCATCAAAAGAGCAACAAAGGATTTTAGAGTGA

Protein sequence

QGLVYMYKSNEFDPILLKHSLYVNGLLREVQFEQLKIVILKGITGQEDEISSKEQQRILE
Homology
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BLAST of Lsi05G008470.1 vs. NCBI nr
Match: gi|778700949|ref|XP_011654940.1| (PREDICTED: F-box protein At2g39490 isoform X2 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-06
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 1   QGLVYMYKSNEFDPILLK------------------HSLYVNGLLREVQFEQLKIVILKG 59
           QG  Y+YKSNEFDPILL                    S  ++   +EV+ EQLK+VILKG
Sbjct: 233 QGPGYLYKSNEFDPILLTVKNAETLTICKWTFEFDPESYRISSTDKEVRLEQLKVVILKG 292

The following BLAST results are available for this feature:
BLAST of Lsi05G008470.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G008470.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi05G008470.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G008470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778700949|ref|XP_011654940.1|7.7e-0646.05PREDICTED: F-box protein At2g39490 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi05G008470Lsi05G008470gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G008470.1.CDS.1Lsi05G008470.1.CDS.1CDS
Lsi05G008470.1.CDS.2Lsi05G008470.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi05G008470.1Lsi05G008470.1-proteinpolypeptide