Lsi05G008470 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G008470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 13896235 .. 13896857 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGGTCTTGTATACATGTATAAGAGTAATGAGTTTGATCCAATTCTGTTGAAACACTCACTTTATGTAAATGGACTTTTGAGGTATTTGCTTAGTAAATTTTGCATTTCAAATGGTGTTTATTTTGTTTATTTTTTTTTATCTGTTGGGCTTGTTTAAGTTGTGGAAGTTGTTGTTGTTTGTAGGCTTTGATCTTTCCTTCTCTTTCTTGGAACTTCAAATTTTATAAGCTGAAAGAGTTATGGTGGATTGATGATTCAAAAGAAAACTTCAATGTCAATCCATTGATTGCCTTCCTCAAATTGTGTCCTGCTTTAGAACGTCTCTTCATTACGGTATTTCATTTAACATTTCTCGAAAGTTTTAATATACAGATGAGAACTTGTTTGAAATGACTTTTCAAGTTGAATATGAATGTATTGATAACCACTATAAGTTTGTGTAAATTTTACTGACTATGTGCAGTTCAATCCAAAAAGTTACTGCATTTCGAGCACTGATGCATTTTTAAGAACATGAATAGAGAAGTTCAATTCGAGCAGCTCAAAATTGTGATCTTGAAGGGAATTACAGGCCAGGAGGATGAAATATCATCAAAAGAGCAACAAAGGATTTTAGAGTGA

mRNA sequence

CAAGGTCTTGTATACATGTATAAGAGTAATGAGTTTGATCCAATTCTGTTGAAACACTCACTTTATGTAAATGGACTTTTGAGAGAAGTTCAATTCGAGCAGCTCAAAATTGTGATCTTGAAGGGAATTACAGGCCAGGAGGATGAAATATCATCAAAAGAGCAACAAAGGATTTTAGAGTGA

Coding sequence (CDS)

CAAGGTCTTGTATACATGTATAAGAGTAATGAGTTTGATCCAATTCTGTTGAAACACTCACTTTATGTAAATGGACTTTTGAGAGAAGTTCAATTCGAGCAGCTCAAAATTGTGATCTTGAAGGGAATTACAGGCCAGGAGGATGAAATATCATCAAAAGAGCAACAAAGGATTTTAGAGTGA

Protein sequence

QGLVYMYKSNEFDPILLKHSLYVNGLLREVQFEQLKIVILKGITGQEDEISSKEQQRILE
Homology
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BLAST of Lsi05G008470 vs. NCBI nr
Match: gi|778700949|ref|XP_011654940.1| (PREDICTED: F-box protein At2g39490 isoform X2 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-06
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 1   QGLVYMYKSNEFDPILLK------------------HSLYVNGLLREVQFEQLKIVILKG 59
           QG  Y+YKSNEFDPILL                    S  ++   +EV+ EQLK+VILKG
Sbjct: 233 QGPGYLYKSNEFDPILLTVKNAETLTICKWTFEFDPESYRISSTDKEVRLEQLKVVILKG 292

The following BLAST results are available for this feature:
BLAST of Lsi05G008470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G008470 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi05G008470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G008470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778700949|ref|XP_011654940.1|7.7e-0646.05PREDICTED: F-box protein At2g39490 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G008470.1Lsi05G008470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G008470Cucurbita moschata (Rifu)cmolsiB476
Lsi05G008470Watermelon (Charleston Gray)lsiwcgB314
Lsi05G008470Watermelon (97103) v2lsiwmbB352
Lsi05G008470Wax gourdlsiwgoB461