Lsi05G007770.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G007770.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	30S ribosomal protein S2, chloroplastic
Location	chr05 : 11097220 .. 11097603 (+)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAGAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAA

mRNA sequence

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAGAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAA

Coding sequence (CDS)

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAGAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAA

Protein sequence

MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQRAKSQRNFRVMNRE

Homology

[Close]

BLAST of Lsi05G007770.1 vs. Swiss-Prot
Match: RR2_CUCSA (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-60
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAA+RGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAATRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATR RCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. Swiss-Prot
Match: RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps2 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-60
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQRA 116
           IVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+A
Sbjct: 73  IVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKA 127

[Close]

BLAST of Lsi05G007770.1 vs. Swiss-Prot
Match: RR2_CARPA (30S ribosomal protein S2, chloroplastic OS=Carica papaya GN=rps2 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.2e-60
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. Swiss-Prot
Match: RR2_RANMC (30S ribosomal protein S2, chloroplastic OS=Ranunculus macranthus GN=rps2 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-59
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVA AA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR EQ+
Sbjct: 73  IVGTKNKAADSVASAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRAEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. Swiss-Prot
Match: RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-59
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAA +ARCHYVNKKWLGGM TNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. TrEMBL
Match: X2FAM2_LAGSI (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria GN=rps2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. TrEMBL
Match: A0A0S2IH71_CUCPE (Ribosomal protein S2 OS=Cucurbita pepo subsp. pepo GN=rps2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. TrEMBL
Match: A0A0S2IG98_9ROSI (Ribosomal protein S2 OS=Cucurbita andreana GN=rps2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. TrEMBL
Match: A0A0S2IE57_9ROSI (Ribosomal protein S2 OS=Cucurbita argyrosperma GN=rps2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. TrEMBL
Match: A0A0S2IFG5_9ROSI (Ribosomal protein S2 OS=Cucurbita ecuadorensis GN=rps2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. TAIR10
Match: ATCG00160.1 (ATCG00160.1 ribosomal protein S2)

HSP 1 Score: 224.6 bits (571), Expect = 3.6e-59
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQRAKS--- 120
           IVGTKNKAAD V+RAA RARCHYVNKKWLGGMLTNWSTTE RLHKFRDLRTEQ+ +    
Sbjct: 73  IVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRDLRTEQKTEGFNR 132

Query: 121 --QRNFRVMNRE 128
             +R+  V+ R+
Sbjct: 133 LPKRDAAVLKRQ 144

[Close]

BLAST of Lsi05G007770.1 vs. NCBI nr
Match: gi|1002166186|ref|YP_009236269.1| (ribosomal protein S2 (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. NCBI nr
Match: gi|952954554|gb|ALO21915.1| (ribosomal protein S2 (plastid) [Cucurbita cordata])

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. NCBI nr
Match: gi|595645475|gb|AHM88934.1| (ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. NCBI nr
Match: gi|952954376|gb|ALO21740.1| (ribosomal protein S2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

[Close]

BLAST of Lsi05G007770.1 vs. NCBI nr
Match: gi|595647815|gb|AHM91235.1| (ribosomal protein S2 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL
Sbjct: 13  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFL 72

Query: 61  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQR 115
           IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQ+
Sbjct: 73  IVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK 126

The following BLAST results are available for this feature:

BLAST of Lsi05G007770.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR2_CUCSA	1.8e-60	97.37	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1	[more]
RR2_EUCGG	3.0e-60	96.52	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus G...	[more]
RR2_CARPA	5.2e-60	97.37	30S ribosomal protein S2, chloroplastic OS=Carica papaya GN=rps2 PE=3 SV=1	[more]
RR2_RANMC	2.6e-59	96.49	30S ribosomal protein S2, chloroplastic OS=Ranunculus macranthus GN=rps2 PE=3 SV...	[more]
RR2_VITVI	5.7e-59	95.61	30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1	[more]

BLAST of Lsi05G007770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
X2FAM2_LAGSI	3.0e-59	99.12	30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria GN=rps2 PE=3 SV=1	[more]
A0A0S2IH71_CUCPE	3.0e-59	99.12	Ribosomal protein S2 OS=Cucurbita pepo subsp. pepo GN=rps2 PE=3 SV=1	[more]
A0A0S2IG98_9ROSI	3.0e-59	99.12	Ribosomal protein S2 OS=Cucurbita andreana GN=rps2 PE=3 SV=1	[more]
A0A0S2IE57_9ROSI	3.0e-59	99.12	Ribosomal protein S2 OS=Cucurbita argyrosperma GN=rps2 PE=3 SV=1	[more]
A0A0S2IFG5_9ROSI	3.0e-59	99.12	Ribosomal protein S2 OS=Cucurbita ecuadorensis GN=rps2 PE=3 SV=1	[more]

BLAST of Lsi05G007770.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00160.1	3.6e-59	84.09	ATCG00160.1 ribosomal protein S2	[more]

BLAST of Lsi05G007770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1002166186\|ref\|YP_009236269.1\|	4.4e-59	99.12	ribosomal protein S2 (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|952954554\|gb\|ALO21915.1\|	4.4e-59	99.12	ribosomal protein S2 (plastid) [Cucurbita cordata]	[more]
gi\|595645475\|gb\|AHM88934.1\|	4.4e-59	99.12	ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria]	[more]
gi\|952954376\|gb\|ALO21740.1\|	4.4e-59	99.12	ribosomal protein S2 (plastid) [Cucurbita argyrosperma]	[more]
gi\|595647815\|gb\|AHM91235.1\|	4.4e-59	99.12	ribosomal protein S2 (chloroplast) [Lagenaria siceraria]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023591	Ribosomal_S2_flav_dom_sf
IPR005706	Ribosomal_S2_bac/mit/plastid
IPR001865	Ribosomal_S2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G007770	Lsi05G007770	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G007770.1.CDS.1	Lsi05G007770.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G007770.1	Lsi05G007770.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 29..38 score: 1.2E-9coord: 79..96 score: 1.
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 1..117 score: 1.1
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 1..126 score: 10
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 1..114 score: 2.7
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAMs	TIGR01011	TIGR01011	coord: 1..118 score: 7.7
IPR023591	Ribosomal protein S2, flavodoxin-like domain	unknown	SSF52313	Ribosomal protein S2	coord: 1..116 score: 1.96
None	No IPR available	GENE3D	G3DSA:1.10.287.610		coord: 92..116 score: 7.2
None	No IPR available	GENE3D	G3DSA:3.40.50.10490		coord: 15..91 score: 2.4