Lsi05G003620.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003620.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_8
Location	chr05 : 4600812 .. 4603007 (-)
Sequence length	814

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCTATTCGATTATTTTTGTTACAGATTCAATCATTTCGGAGCTATGGCTCTCAATCTCCATTGTTACCATTTATCAGCTTGCTTCCTTTCTCTTCATCCAAAATTTCAAGTTCTTCGCTCCGATCGTCAGAATCGCACTTCGAAACTGAGTTCAAATTCGGCCAAATTCCTCGGAATTCGAAGCTCCGCGGACTCGAACAATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCCTCCCTCAATCATCCACGGGCTTGTCGATTTCACACTGCACATTTTGGAGGTAATGCCCGAAGTTATTTTTCCAATTTCGTATCCATTTTGCGTTTCTGTTTTTTACAATTTGAATGTGTTTGGAGATTTGGTTGCTGCTCGGCTCTTGGTTTATCTATTATTTCTAATCCCTGTTTAGTTGGTTGTAAACAAGGTGCTTTTTGAATTCATGGAACTGGAAATTGAAGGTTCATACTTTTGGTTTTACTTCAAATACTTGCAGATATCTATTCAGGATGTGGACAAACTAAACATGTGTTATGGTAGGTCTCTGTTGCATGATATACAAACTAAGAAACAGCATAATCTTAATGTATATATGAAAGCTTAGGAACTAAAGTGGAATAAATCAGGCCTCTCGCTTGATAACAATTTCATTTTGAGTTTTATGTTTTTTGAAATTTATGTTTGTTTGTTTACAATTTTTCAACTATGATTTGTACTTTTGTCCTTGTCAATTCTAAAAACAAAAACTACTTCTTTTAGTTTTTAAAACTTGATTTTGTTTTCCTAAACATTAGAAGAAAACTGGAGCATGGTGTTAGTACCTTTACAGGATTAAATTTATCTTATGAGTGTGTATGTGCGTGGTTATTGGAGGATTAAATGCCTAGTACTGAAAAGTCTTCCTTTTGATGCTTGTCTACACAGCCGCAAGTTGAAATGTTAAACATTGTGCATACTTCAAACCTTATGCATAACCAAATACACGTCGATTGATATTGATTGGAAGAGGCAAAGGTTCGAGATTGACTGTGAAAACTCGTAAATGTTTTGTTTCTCTTTTGTACCTGAAATGTTTTTGGATAATTTGAAGATTGAAAACAGACTTCAATTCAGTTTATTGCTTCAAATCATTCTTGACTTTTTTCTGAAAGGTCCAAGTTCTAACTTCTGGAGCCATAAGTCATTGTTTTGCTGCTCAAGACTGTAATCCATCCTTTTTCTTACAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGAACAATGGACACTCCAAACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCAGGATGTACTGCTTCTCCGCACTCATCCTACGACGATGATTAGTACGGTAAACCGACAACCTTTTCTTCCGGTCCCCTTCATTCGTTCAAGACTCCTGATCTTTTTTTTTTTGTCTCCTTCCTGAAGTAATTCTATGTACAAGTGTACATATTCATATCTTATCTTAATTGTTTTTGTTGCCTCTTTATATGGGATTGCCAACAATATTAATATAGTTAATTATGTTGGAAATCTGGATCAATGGCAAATTTGTATGATGATAATCTGTGAGGCCTTCCATTACTCAAGCTTACCGTAGAAGGGGTAATAAGGGAAATGTACCCTCTCGAGGTTGTTTTGTGTCAATAAAGGAAGTGGAGCGTGGATGTTAGGAATTGAAAAAACTCAAGTGCAGCCCCTGCTGCACGCCTGCACCTAATAAATGTTGACACGTGTTAATATTTTTTTAAAAATAATTAATTAACTTTTTTTTTTTTTCTTGCTAGAAAGTGGAGAGCAGGAGACTTAGTGCAGCCAGTATTACTCGTTTGGAATATCCTTTTTGGTCTTGGGCGTTATATAGTCTTTTCAGTCTTTTCAATTAGTTAGTCTTTTCTTTTGTGTATTTCAGTGCAAAATTTTTATGGGTGGAAGAGTAAAATCTCTTAAATTTGTACAAAACATTGCTATTTTTTTTTTTAATTCTTTTTCTTCGATGGTAGACTTTGCCATATTAATAACTTCTTTAAGTTAGCGAGATATGTTATGAGATGAATTACTTAAAATACCTATATAAATCAATTGAATTTACCAAATGTGCACCAATAATAAAAGGATATTTATTTAAATACATCG

mRNA sequence

TACAGCTATTCGATTATTTTTGTTACAGATTCAATCATTTCGGAGCTATGGCTCTCAATCTCCATTGTTACCATTTATCAGCTTGCTTCCTTTCTCTTCATCCAAAATTTCAAGTTCTTCGCTCCGATCGTCAGAATCGCACTTCGAAACTGAGTTCAAATTCGGCCAAATTCCTCGGAATTCGAAGCTCCGCGGACTCGAACAATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCCTCCCTCAATCATCCACGGGCTTGTCGATTTCACACTGCACATTTTGGAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGAACAATGGACACTCCAAACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCAGGATGTACTGCTTCTCCGCACTCATCCTACGACGATGATTAGTACGAAAGTGGAGAGCAGGAGACTTAGTGCAGCCAGTATTACTCGTTTGGAATATCCTTTTTGGTCTTGGGCGTTATATAGTCTTTTCAGTCTTTTCAATTAGTTAGTCTTTTCTTTTGTGTATTTCAGTGCAAAATTTTTATGGGTGGAAGAGTAAAATCTCTTAAATTTGTACAAAACATTGCTATTTTTTTTTTTAATTCTTTTTCTTCGATGGTAGACTTTGCCATATTAATAACTTCTTTAAGTTAGCGAGATATGTTATGAGATGAATTACTTAAAATACCTATATAAATCAATTGAATTTACCAAATGTGCACCAATAATAAAAGGATATTTATTTAAATACATCG

Coding sequence (CDS)

ATGGCTCTCAATCTCCATTGTTACCATTTATCAGCTTGCTTCCTTTCTCTTCATCCAAAATTTCAAGTTCTTCGCTCCGATCGTCAGAATCGCACTTCGAAACTGAGTTCAAATTCGGCCAAATTCCTCGGAATTCGAAGCTCCGCGGACTCGAACAATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCCTCCCTCAATCATCCACGGGCTTGTCGATTTCACACTGCACATTTTGGAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGAACAATGGACACTCCAAACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCAGGATGTACTGCTTCTCCGCACTCATCCTACGACGATGATTAG

Protein sequence

MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPHSSYDDD

Homology

[Close]

BLAST of Lsi05G003620.1 vs. TrEMBL
Match: A0A0A0L8V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185090 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 122/137 (89.05%), Postives = 126/137 (91.97%), Query Frame = 1


Query: 1   MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTC 60
           MA NLHCYH SA F+SLH KF VLRSD  NRTSKLSSNS K L IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHT+HFGGETKRKFESVHSGGTMDTP+SGKVFQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASPHSSYDDD 138
           PFDPGCTASPHSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G003620.1 vs. TrEMBL
Match: W9S912_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027126 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 81/97 (83.51%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 40  AKFLGIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGG 99
           +KFL +R S D   + TLRTC+NCK QFDPSLNHPRACRFHTAHFGGETKRKFESVH+GG
Sbjct: 23  SKFLPLRCSVDPIKKATLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGG 82

Query: 100 TMDTPNSGKVFQYWHCCGSEDPFDPGCTASPHSSYDD 137
           TMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PHSSYDD
Sbjct: 83  TMDTPDSGRVFQYWHCCGSEDPFDPGCTAAPHSSYDD 119

[Close]

BLAST of Lsi05G003620.1 vs. TrEMBL
Match: V4S8S6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013088mg PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G003620.1 vs. TrEMBL
Match: A0A067FIY9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032756mg PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G003620.1 vs. TrEMBL
Match: A0A067JFQ2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02509 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-42
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 47  SSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNS 106
           SS + N   TLRTC+NCK QFDPSLNHPRACRFHTAHFGGETKRKFESV+SGGTMDTP+S
Sbjct: 48  SSINPNGNETLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVYSGGTMDTPDS 107

Query: 107 GKVFQYWHCCGSEDPFDPGCTASPHSSYDD 137
           G+VFQYWHCCGSEDPFDPGCTA+PHSSYDD
Sbjct: 108 GQVFQYWHCCGSEDPFDPGCTAAPHSSYDD 137

[Close]

BLAST of Lsi05G003620.1 vs. TAIR10
Match: AT5G38060.1 (AT5G38060.1 unknown protein)

HSP 1 Score: 171.0 bits (432), Expect = 5.0e-43
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 8   YHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQF 67
           + LS+   S+        S +  +T KL  NS +F    +++ S+   TLRTC+NCK QF
Sbjct: 8   FQLSSSSFSIPKTLIHSHSLKTLKTPKL--NSRQFFSQCTASSSDGPKTLRTCKNCKTQF 67

Query: 68  DPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCT 127
           DP LN+PRACRFHTAHFGGETKRKFESV++GGTMDTPNSGKV QYWHCCGSEDPFD GCT
Sbjct: 68  DPLLNNPRACRFHTAHFGGETKRKFESVYTGGTMDTPNSGKVLQYWHCCGSEDPFDSGCT 127

Query: 128 ASPHSSYDD 137
           ASPH++YDD
Sbjct: 128 ASPHTTYDD 134

[Close]

BLAST of Lsi05G003620.1 vs. TAIR10
Match: AT1G65000.1 (AT1G65000.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 58  RTCRNCKAQFDPSLNHPRACRFHTAHF----GGETKRKFESVHSGGTMDTPNSGKVFQYW 117
           + C+ CK  +    N   +CRFH + F      + KR +E        D P + K   ++
Sbjct: 8   KLCQRCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYELKPD----DPPYAAK---FY 67

Query: 118 HCCGSEDPFDPGCTASPHSSYDD 137
            CCG+EDP  PGC  +PH SYDD
Sbjct: 68  DCCGAEDPNAPGCVTNPHISYDD 83

[Close]

BLAST of Lsi05G003620.1 vs. NCBI nr
Match: gi|449445965|ref|XP_004140742.1| (PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 122/137 (89.05%), Postives = 126/137 (91.97%), Query Frame = 1


Query: 1   MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTC 60
           MA NLHCYH SA F+SLH KF VLRSD  NRTSKLSSNS K L IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHT+HFGGETKRKFESVHSGGTMDTP+SGKVFQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASPHSSYDDD 138
           PFDPGCTASPHSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G003620.1 vs. NCBI nr
Match: gi|659114539|ref|XP_008457102.1| (PREDICTED: uncharacterized protein LOC103496857 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-59
Identity = 114/137 (83.21%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 1   MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTC 60
           MA NLHCYH S  F+SLH    VLRS     TSK  SNS KFL IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSPPFISLHSYPLVLRSHAPYPTSKHCSNSLKFLSIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSED 120
           RNCK+QFDPSLNHPRACRFHTAHFGGETKRKFESVH GGTMDTP+SGKVFQYWHCCGSED
Sbjct: 61  RNCKSQFDPSLNHPRACRFHTAHFGGETKRKFESVHLGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASPHSSYDDD 138
           PFDPGCTASPHSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G003620.1 vs. NCBI nr
Match: gi|703146957|ref|XP_010108931.1| (hypothetical protein L484_027126 [Morus notabilis])

HSP 1 Score: 186.4 bits (472), Expect = 3.3e-44
Identity = 81/97 (83.51%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 40  AKFLGIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGG 99
           +KFL +R S D   + TLRTC+NCK QFDPSLNHPRACRFHTAHFGGETKRKFESVH+GG
Sbjct: 23  SKFLPLRCSVDPIKKATLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGG 82

Query: 100 TMDTPNSGKVFQYWHCCGSEDPFDPGCTASPHSSYDD 137
           TMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PHSSYDD
Sbjct: 83  TMDTPDSGRVFQYWHCCGSEDPFDPGCTAAPHSSYDD 119

[Close]

BLAST of Lsi05G003620.1 vs. NCBI nr
Match: gi|567876157|ref|XP_006430668.1| (hypothetical protein CICLE_v10013088mg [Citrus clementina])

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G003620.1 vs. NCBI nr
Match: gi|568857221|ref|XP_006482165.1| (PREDICTED: uncharacterized protein LOC102614560 [Citrus sinensis])

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

The following BLAST results are available for this feature:

BLAST of Lsi05G003620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8V5_CUCSA	1.4e-65	89.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185090 PE=4 SV=1	[more]
W9S912_9ROSA	2.3e-44	83.51	Uncharacterized protein OS=Morus notabilis GN=L484_027126 PE=4 SV=1	[more]
V4S8S6_9ROSI	2.8e-42	68.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013088mg PE=4 SV=1	[more]
A0A067FIY9_CITSI	2.8e-42	68.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032756mg PE=4 SV=1	[more]
A0A067JFQ2_JATCU	6.2e-42	86.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02509 PE=4 SV=1	[more]

BLAST of Lsi05G003620.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38060.1	5.0e-43	63.57	unknown protein	[more]
AT1G65000.1	2.4e-08	36.14	unknown protein	[more]

BLAST of Lsi05G003620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445965\|ref\|XP_004140742.1\|	2.0e-65	89.05	PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus]	[more]
gi\|659114539\|ref\|XP_008457102.1\|	2.8e-59	83.21	PREDICTED: uncharacterized protein LOC103496857 [Cucumis melo]	[more]
gi\|703146957\|ref\|XP_010108931.1\|	3.3e-44	83.51	hypothetical protein L484_027126 [Morus notabilis]	[more]
gi\|567876157\|ref\|XP_006430668.1\|	4.0e-42	68.00	hypothetical protein CICLE_v10013088mg [Citrus clementina]	[more]
gi\|568857221\|ref\|XP_006482165.1\|	4.0e-42	68.00	PREDICTED: uncharacterized protein LOC102614560 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G003620	Lsi05G003620	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G003620.1.three_prime_UTR.2	Lsi05G003620.1.three_prime_UTR.2	three_prime_UTR
Lsi05G003620.1.three_prime_UTR.1	Lsi05G003620.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G003620.1.CDS.2	Lsi05G003620.1.CDS.2	CDS
Lsi05G003620.1.CDS.1	Lsi05G003620.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G003620.1.five_prime_UTR.1	Lsi05G003620.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G003620.1	Lsi05G003620.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35106	FAMILY NOT NAMED	coord: 1..137 score: 2.5
None	No IPR available	PANTHER	PTHR35106:SF2	EXPRESSED PROTEIN	coord: 1..137 score: 2.5