Lsi05G003620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_8
Location	chr05 : 4600812 .. 4603007 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCTATTCGATTATTTTTGTTACAGATTCAATCATTTCGGAGCTATGGCTCTCAATCTCCATTGTTACCATTTATCAGCTTGCTTCCTTTCTCTTCATCCAAAATTTCAAGTTCTTCGCTCCGATCGTCAGAATCGCACTTCGAAACTGAGTTCAAATTCGGCCAAATTCCTCGGAATTCGAAGCTCCGCGGACTCGAACAATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCCTCCCTCAATCATCCACGGGCTTGTCGATTTCACACTGCACATTTTGGAGGTAATGCCCGAAGTTATTTTTCCAATTTCGTATCCATTTTGCGTTTCTGTTTTTTACAATTTGAATGTGTTTGGAGATTTGGTTGCTGCTCGGCTCTTGGTTTATCTATTATTTCTAATCCCTGTTTAGTTGGTTGTAAACAAGGTGCTTTTTGAATTCATGGAACTGGAAATTGAAGGTTCATACTTTTGGTTTTACTTCAAATACTTGCAGATATCTATTCAGGATGTGGACAAACTAAACATGTGTTATGGTAGGTCTCTGTTGCATGATATACAAACTAAGAAACAGCATAATCTTAATGTATATATGAAAGCTTAGGAACTAAAGTGGAATAAATCAGGCCTCTCGCTTGATAACAATTTCATTTTGAGTTTTATGTTTTTTGAAATTTATGTTTGTTTGTTTACAATTTTTCAACTATGATTTGTACTTTTGTCCTTGTCAATTCTAAAAACAAAAACTACTTCTTTTAGTTTTTAAAACTTGATTTTGTTTTCCTAAACATTAGAAGAAAACTGGAGCATGGTGTTAGTACCTTTACAGGATTAAATTTATCTTATGAGTGTGTATGTGCGTGGTTATTGGAGGATTAAATGCCTAGTACTGAAAAGTCTTCCTTTTGATGCTTGTCTACACAGCCGCAAGTTGAAATGTTAAACATTGTGCATACTTCAAACCTTATGCATAACCAAATACACGTCGATTGATATTGATTGGAAGAGGCAAAGGTTCGAGATTGACTGTGAAAACTCGTAAATGTTTTGTTTCTCTTTTGTACCTGAAATGTTTTTGGATAATTTGAAGATTGAAAACAGACTTCAATTCAGTTTATTGCTTCAAATCATTCTTGACTTTTTTCTGAAAGGTCCAAGTTCTAACTTCTGGAGCCATAAGTCATTGTTTTGCTGCTCAAGACTGTAATCCATCCTTTTTCTTACAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGAACAATGGACACTCCAAACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCAGGATGTACTGCTTCTCCGCACTCATCCTACGACGATGATTAGTACGGTAAACCGACAACCTTTTCTTCCGGTCCCCTTCATTCGTTCAAGACTCCTGATCTTTTTTTTTTTGTCTCCTTCCTGAAGTAATTCTATGTACAAGTGTACATATTCATATCTTATCTTAATTGTTTTTGTTGCCTCTTTATATGGGATTGCCAACAATATTAATATAGTTAATTATGTTGGAAATCTGGATCAATGGCAAATTTGTATGATGATAATCTGTGAGGCCTTCCATTACTCAAGCTTACCGTAGAAGGGGTAATAAGGGAAATGTACCCTCTCGAGGTTGTTTTGTGTCAATAAAGGAAGTGGAGCGTGGATGTTAGGAATTGAAAAAACTCAAGTGCAGCCCCTGCTGCACGCCTGCACCTAATAAATGTTGACACGTGTTAATATTTTTTTAAAAATAATTAATTAACTTTTTTTTTTTTTCTTGCTAGAAAGTGGAGAGCAGGAGACTTAGTGCAGCCAGTATTACTCGTTTGGAATATCCTTTTTGGTCTTGGGCGTTATATAGTCTTTTCAGTCTTTTCAATTAGTTAGTCTTTTCTTTTGTGTATTTCAGTGCAAAATTTTTATGGGTGGAAGAGTAAAATCTCTTAAATTTGTACAAAACATTGCTATTTTTTTTTTTAATTCTTTTTCTTCGATGGTAGACTTTGCCATATTAATAACTTCTTTAAGTTAGCGAGATATGTTATGAGATGAATTACTTAAAATACCTATATAAATCAATTGAATTTACCAAATGTGCACCAATAATAAAAGGATATTTATTTAAATACATCG

mRNA sequence

TACAGCTATTCGATTATTTTTGTTACAGATTCAATCATTTCGGAGCTATGGCTCTCAATCTCCATTGTTACCATTTATCAGCTTGCTTCCTTTCTCTTCATCCAAAATTTCAAGTTCTTCGCTCCGATCGTCAGAATCGCACTTCGAAACTGAGTTCAAATTCGGCCAAATTCCTCGGAATTCGAAGCTCCGCGGACTCGAACAATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCCTCCCTCAATCATCCACGGGCTTGTCGATTTCACACTGCACATTTTGGAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGAACAATGGACACTCCAAACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCAGGATGTACTGCTTCTCCGCACTCATCCTACGACGATGATTAGTACGAAAGTGGAGAGCAGGAGACTTAGTGCAGCCAGTATTACTCGTTTGGAATATCCTTTTTGGTCTTGGGCGTTATATAGTCTTTTCAGTCTTTTCAATTAGTTAGTCTTTTCTTTTGTGTATTTCAGTGCAAAATTTTTATGGGTGGAAGAGTAAAATCTCTTAAATTTGTACAAAACATTGCTATTTTTTTTTTTAATTCTTTTTCTTCGATGGTAGACTTTGCCATATTAATAACTTCTTTAAGTTAGCGAGATATGTTATGAGATGAATTACTTAAAATACCTATATAAATCAATTGAATTTACCAAATGTGCACCAATAATAAAAGGATATTTATTTAAATACATCG

Coding sequence (CDS)

ATGGCTCTCAATCTCCATTGTTACCATTTATCAGCTTGCTTCCTTTCTCTTCATCCAAAATTTCAAGTTCTTCGCTCCGATCGTCAGAATCGCACTTCGAAACTGAGTTCAAATTCGGCCAAATTCCTCGGAATTCGAAGCTCCGCGGACTCGAACAATCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTTGATCCCTCCCTCAATCATCCACGGGCTTGTCGATTTCACACTGCACATTTTGGAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGAACAATGGACACTCCAAACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCAGGATGTACTGCTTCTCCGCACTCATCCTACGACGATGATTAG

Protein sequence

MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPHSSYDDD

Homology

[Close]

BLAST of Lsi05G003620 vs. TrEMBL
Match: A0A0A0L8V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185090 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 122/137 (89.05%), Postives = 126/137 (91.97%), Query Frame = 1


Query: 1   MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTC 60
           MA NLHCYH SA F+SLH KF VLRSD  NRTSKLSSNS K L IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHT+HFGGETKRKFESVHSGGTMDTP+SGKVFQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASPHSSYDDD 138
           PFDPGCTASPHSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G003620 vs. TrEMBL
Match: W9S912_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027126 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 81/97 (83.51%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 40  AKFLGIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGG 99
           +KFL +R S D   + TLRTC+NCK QFDPSLNHPRACRFHTAHFGGETKRKFESVH+GG
Sbjct: 23  SKFLPLRCSVDPIKKATLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGG 82

Query: 100 TMDTPNSGKVFQYWHCCGSEDPFDPGCTASPHSSYDD 137
           TMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PHSSYDD
Sbjct: 83  TMDTPDSGRVFQYWHCCGSEDPFDPGCTAAPHSSYDD 119

[Close]

BLAST of Lsi05G003620 vs. TrEMBL
Match: V4S8S6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013088mg PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G003620 vs. TrEMBL
Match: A0A067FIY9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032756mg PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G003620 vs. TrEMBL
Match: A0A067JFQ2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02509 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-42
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 47  SSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNS 106
           SS + N   TLRTC+NCK QFDPSLNHPRACRFHTAHFGGETKRKFESV+SGGTMDTP+S
Sbjct: 48  SSINPNGNETLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVYSGGTMDTPDS 107

Query: 107 GKVFQYWHCCGSEDPFDPGCTASPHSSYDD 137
           G+VFQYWHCCGSEDPFDPGCTA+PHSSYDD
Sbjct: 108 GQVFQYWHCCGSEDPFDPGCTAAPHSSYDD 137

[Close]

BLAST of Lsi05G003620 vs. TAIR10
Match: AT5G38060.1 (AT5G38060.1 unknown protein)

HSP 1 Score: 171.0 bits (432), Expect = 5.0e-43
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 8   YHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQF 67
           + LS+   S+        S +  +T KL  NS +F    +++ S+   TLRTC+NCK QF
Sbjct: 8   FQLSSSSFSIPKTLIHSHSLKTLKTPKL--NSRQFFSQCTASSSDGPKTLRTCKNCKTQF 67

Query: 68  DPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCT 127
           DP LN+PRACRFHTAHFGGETKRKFESV++GGTMDTPNSGKV QYWHCCGSEDPFD GCT
Sbjct: 68  DPLLNNPRACRFHTAHFGGETKRKFESVYTGGTMDTPNSGKVLQYWHCCGSEDPFDSGCT 127

Query: 128 ASPHSSYDD 137
           ASPH++YDD
Sbjct: 128 ASPHTTYDD 134

[Close]

BLAST of Lsi05G003620 vs. TAIR10
Match: AT1G65000.1 (AT1G65000.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 58  RTCRNCKAQFDPSLNHPRACRFHTAHF----GGETKRKFESVHSGGTMDTPNSGKVFQYW 117
           + C+ CK  +    N   +CRFH + F      + KR +E        D P + K   ++
Sbjct: 8   KLCQRCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYELKPD----DPPYAAK---FY 67

Query: 118 HCCGSEDPFDPGCTASPHSSYDD 137
            CCG+EDP  PGC  +PH SYDD
Sbjct: 68  DCCGAEDPNAPGCVTNPHISYDD 83

[Close]

BLAST of Lsi05G003620 vs. NCBI nr
Match: gi|449445965|ref|XP_004140742.1| (PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 122/137 (89.05%), Postives = 126/137 (91.97%), Query Frame = 1


Query: 1   MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTC 60
           MA NLHCYH SA F+SLH KF VLRSD  NRTSKLSSNS K L IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSED 120
           RNCKAQFDPSLNHPRACRFHT+HFGGETKRKFESVHSGGTMDTP+SGKVFQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASPHSSYDDD 138
           PFDPGCTASPHSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G003620 vs. NCBI nr
Match: gi|659114539|ref|XP_008457102.1| (PREDICTED: uncharacterized protein LOC103496857 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-59
Identity = 114/137 (83.21%), Postives = 118/137 (86.13%), Query Frame = 1


Query: 1   MALNLHCYHLSACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTC 60
           MA NLHCYH S  F+SLH    VLRS     TSK  SNS KFL IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSPPFISLHSYPLVLRSHAPYPTSKHCSNSLKFLSIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSED 120
           RNCK+QFDPSLNHPRACRFHTAHFGGETKRKFESVH GGTMDTP+SGKVFQYWHCCGSED
Sbjct: 61  RNCKSQFDPSLNHPRACRFHTAHFGGETKRKFESVHLGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASPHSSYDDD 138
           PFDPGCTASPHSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G003620 vs. NCBI nr
Match: gi|703146957|ref|XP_010108931.1| (hypothetical protein L484_027126 [Morus notabilis])

HSP 1 Score: 186.4 bits (472), Expect = 3.3e-44
Identity = 81/97 (83.51%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 40  AKFLGIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRACRFHTAHFGGETKRKFESVHSGG 99
           +KFL +R S D   + TLRTC+NCK QFDPSLNHPRACRFHTAHFGGETKRKFESVH+GG
Sbjct: 23  SKFLPLRCSVDPIKKATLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGG 82

Query: 100 TMDTPNSGKVFQYWHCCGSEDPFDPGCTASPHSSYDD 137
           TMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PHSSYDD
Sbjct: 83  TMDTPDSGRVFQYWHCCGSEDPFDPGCTAAPHSSYDD 119

[Close]

BLAST of Lsi05G003620 vs. NCBI nr
Match: gi|567876157|ref|XP_006430668.1| (hypothetical protein CICLE_v10013088mg [Citrus clementina])

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G003620 vs. NCBI nr
Match: gi|568857221|ref|XP_006482165.1| (PREDICTED: uncharacterized protein LOC102614560 [Citrus sinensis])

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ACFLSLHPKFQVLRSDRQNRTSKLSSNSAKFLGIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH +     S  + R   +   S K   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLH-RISPTSSQTRLRPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRACRFHTAHFGGETKRKFESVHSGGTMDTPNSGKVFQYWHCCGSEDPFDPGCTASPH 131
           NHPRACRFHTAHFGGETKRKFESV++GGTMDTP+SG+VFQYWHCCGSEDPFDPGCTA+PH
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

The following BLAST results are available for this feature:

BLAST of Lsi05G003620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8V5_CUCSA	1.4e-65	89.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185090 PE=4 SV=1	[more]
W9S912_9ROSA	2.3e-44	83.51	Uncharacterized protein OS=Morus notabilis GN=L484_027126 PE=4 SV=1	[more]
V4S8S6_9ROSI	2.8e-42	68.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013088mg PE=4 SV=1	[more]
A0A067FIY9_CITSI	2.8e-42	68.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032756mg PE=4 SV=1	[more]
A0A067JFQ2_JATCU	6.2e-42	86.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02509 PE=4 SV=1	[more]

BLAST of Lsi05G003620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38060.1	5.0e-43	63.57	unknown protein	[more]
AT1G65000.1	2.4e-08	36.14	unknown protein	[more]

BLAST of Lsi05G003620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445965\|ref\|XP_004140742.1\|	2.0e-65	89.05	PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus]	[more]
gi\|659114539\|ref\|XP_008457102.1\|	2.8e-59	83.21	PREDICTED: uncharacterized protein LOC103496857 [Cucumis melo]	[more]
gi\|703146957\|ref\|XP_010108931.1\|	3.3e-44	83.51	hypothetical protein L484_027126 [Morus notabilis]	[more]
gi\|567876157\|ref\|XP_006430668.1\|	4.0e-42	68.00	hypothetical protein CICLE_v10013088mg [Citrus clementina]	[more]
gi\|568857221\|ref\|XP_006482165.1\|	4.0e-42	68.00	PREDICTED: uncharacterized protein LOC102614560 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003620.1	Lsi05G003620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35106	FAMILY NOT NAMED	coord: 1..137 score: 2.5
None	No IPR available	PANTHER	PTHR35106:SF2	EXPRESSED PROTEIN	coord: 1..137 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003620	Cucumber (Gy14) v2	cgyblsiB190
Lsi05G003620	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003620	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003620	Melon (DHL92) v3.6.1	lsimedB406
Lsi05G003620	Silver-seed gourd	carlsiB435
Lsi05G003620	Silver-seed gourd	carlsiB700
Lsi05G003620	Cucumber (Chinese Long) v3	cuclsiB225
Lsi05G003620	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G003620	Watermelon (97103) v2	lsiwmbB329
Lsi05G003620	Wax gourd	lsiwgoB447
Lsi05G003620	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003620	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003620	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003620	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003620	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003620	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003620	Wild cucumber (PI 183967)	cpilsiB203
Lsi05G003620	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003620	Cucumber (Chinese Long) v2	culsiB206
Lsi05G003620	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003620	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003620	Melon (DHL92) v3.5.1	lsimeB385
Lsi05G003620	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003620	Watermelon (97103) v1	lsiwmB361