Lsi05G002340.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G002340.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionD-3-phosphoglycerate dehydrogenase
Locationchr05 : 3098116 .. 3098688 (-)
Sequence length573
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCTCCGCTTCACCTACGCTCCGTACACCGTCGTTAAGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTGTTCCTTCGGCTTTTTCTGTTAATCTTCGTCCACGGAGTGTTGCCGCGCTGCGGTTTGTGGTGTTGGTTTCTGCGTCTCTGAATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGGGCAGCGGGTCTTGATCTTCTTAAGGAATTTGCTAATGTTGATTGTTCCTATAATCTGAGTCCTGAGGAGCTTTGTACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGCGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGAGCTGGTGTTGGCATTGACAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCCACTGCTAACACGGTAGCTGCCGCTGAGCATGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCATCTGTTAAAGCTGGTACGTTTTTCGTTTTCTGTTTTGCTTGA

mRNA sequence

ATGGCTGCCTCCGCTTCACCTACGCTCCGTACACCGTCGTTAAGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTGTTCCTTCGGCTTTTTCTGTTAATCTTCGTCCACGGAGTGTTGCCGCGCTGCGGTTTGTGGTGTTGGTTTCTGCGTCTCTGAATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGGGCAGCGGGTCTTGATCTTCTTAAGGAATTTGCTAATGTTGATTGTTCCTATAATCTGAGTCCTGAGGAGCTTTGTACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGCGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGAGCTGGTGTTGGCATTGACAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCCACTGCTAACACGGTAGCTGCCGCTGAGCATGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCATCTGTTAAAGCTGGTACGTTTTTCGTTTTCTGTTTTGCTTGA

Coding sequence (CDS)

ATGGCTGCCTCCGCTTCACCTACGCTCCGTACACCGTCGTTAAGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTGTTCCTTCGGCTTTTTCTGTTAATCTTCGTCCACGGAGTGTTGCCGCGCTGCGGTTTGTGGTGTTGGTTTCTGCGTCTCTGAATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGGGCAGCGGGTCTTGATCTTCTTAAGGAATTTGCTAATGTTGATTGTTCCTATAATCTGAGTCCTGAGGAGCTTTGTACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGCGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGAGCTGGTGTTGGCATTGACAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCCACTGCTAACACGGTAGCTGCCGCTGAGCATGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCATCTGTTAAAGCTGGTACGTTTTTCGTTTTCTGTTTTGCTTGA

Protein sequence

MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGTFFVFCFA
Homology
[Close]
BLAST of Lsi05G002340.1 vs. Swiss-Prot
Match: SERA1_ARATH (D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=PGDH1 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 135/184 (73.37%), Postives = 149/184 (80.98%), Query Frame = 1 

Query: 2   AASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAAL-RFVVLVSASLN--AKP 61
           AAS+S  + T SLRN  LSS S   P+PSA SV    R    L R +VLVS S    +KP
Sbjct: 6   AASSSIAVATNSLRNVTLSSRS---PLPSAISVAFPSRGRNTLQRRLVLVSCSTGDGSKP 65

Query: 62  TVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSG 121
           T+LVAEKLG AG+ LL++ ANVDCSYN++PEEL  KISLCDALIVRSGTKV REVFESS 
Sbjct: 66  TILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSH 125

Query: 122 GRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADAS 181
           GRLKVVGRAGVGIDNVDL+AATE GCLVVNAPTANT+AAAEHGIAL+ AMARNVAQADAS
Sbjct: 126 GRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADAS 185

Query: 182 VKAG 183
           VKAG
Sbjct: 186 VKAG 186

[Close]
BLAST of Lsi05G002340.1 vs. Swiss-Prot
Match: SERA3_ARATH (D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=PGDH3 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-56
Identity = 123/168 (73.21%), Postives = 139/168 (82.74%), Query Frame = 1 

Query: 16  NSVLSSLSSKLPVPSA-FSVNLRPRSVAALRFVVLVSASLNAKPTVLVAEKLGAAGLDLL 75
           +S+ SS S  +  PS+ F +  R R +     V   S+    KPT+LV EKLG AG+DLL
Sbjct: 8   SSIFSSSSRLVTTPSSVFPIRQRRRII----LVTSSSSGGGGKPTILVTEKLGQAGIDLL 67

Query: 76  KEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNV 135
           K++ANVDCSY+LS EELCTKISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVGIDNV
Sbjct: 68  KKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRGRLKVVGRAGVGIDNV 127

Query: 136 DLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAG 183
           DLAAATE+GCLVVNAPTANTVAAAEHGIALLTAMARN+AQADAS+KAG
Sbjct: 128 DLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAG 171

[Close]
BLAST of Lsi05G002340.1 vs. Swiss-Prot
Match: SERA2_ARATH (D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=PGDH2 PE=1 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 6.1e-49
Identity = 101/126 (80.16%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 57  KPTVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFES 116
           KP +LV EKLG AG++LL+EF +VDCSY+LSPE+L  K++  DALIVRSGTKV+REVFE+
Sbjct: 82  KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141

Query: 117 SGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQAD 176
           + GRLKVVGRAGVGIDNVDL AATEHGCLVVNAPTANTVAAAEHGIALL +MARNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201

Query: 177 ASVKAG 183
           AS+KAG
Sbjct: 202 ASIKAG 207

[Close]
BLAST of Lsi05G002340.1 vs. Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-24
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 60  VLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 119
           VL+A+ +   G+  L+E A V  +  ++PEEL   I   DA++VRS TKV+REV E++  
Sbjct: 6   VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAP- 65

Query: 120 RLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 179
           RLK++ RAGVG+DNVD+ AAT+ G +V+NAP + ++  AEH I L+ A+AR +A AD SV
Sbjct: 66  RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSV 125

Query: 180 KAG 183
           K G
Sbjct: 126 KEG 127

[Close]
BLAST of Lsi05G002340.1 vs. Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=serA PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 55/121 (45.45%), Postives = 87/121 (71.90%), Query Frame = 1 

Query: 60  VLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 119
           VLV++ +   G+D+LK+ A VD    LS  E+   +   DA+++RS TKV+ ++ ++ G 
Sbjct: 32  VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQA-GS 91

Query: 120 RLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 179
           +LK++GRAGVG+DN+D+ AAT  G +VVN+P  NT+AAAEH +A++ A+AR++  A+ SV
Sbjct: 92  QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSV 151

Query: 180 K 181
           K
Sbjct: 152 K 151

[Close]
BLAST of Lsi05G002340.1 vs. TrEMBL
Match: A0A0A0LBW6_CUCSA (D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus GN=Csa_3G199630 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.8e-85
Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MAASASPTLRTPSLRNS+ SSLSSKLP+PSAFSVNLRPRSVAA RFVVLVSASLNAKPTV
Sbjct: 1   MAASASPTLRTPSLRNSLFSSLSSKLPLPSAFSVNLRPRSVAAPRFVVLVSASLNAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180

Query: 181 AG 183
           AG
Sbjct: 181 AG 182

[Close]
BLAST of Lsi05G002340.1 vs. TrEMBL
Match: A0A0S3SM32_PHAAN (D-3-phosphoglycerate dehydrogenase OS=Vigna angularis var. angularis GN=Vigan.08G045900 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.9e-69
Identity = 153/182 (84.07%), Postives = 160/182 (87.91%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340.1 vs. TrEMBL
Match: A0A0L9U0H0_PHAAN (D-3-phosphoglycerate dehydrogenase OS=Phaseolus angularis GN=LR48_Vigan02g240600 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-68
Identity = 152/182 (83.52%), Postives = 159/182 (87.36%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGR GVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRDGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340.1 vs. TrEMBL
Match: M5VIT2_PRUPE (D-3-phosphoglycerate dehydrogenase OS=Prunus persica GN=PRUPE_ppa003143mg PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 154/183 (84.15%), Postives = 160/183 (87.43%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSAS-LNAKPT 60
           MA SA   LRTP LRN  LS LSSK  + S F V+L  R  AA R VV++SA+ L+AKPT
Sbjct: 1   MATSAPHALRTPFLRNPTLS-LSSKPTLSSVFPVSLSSRRRAAPRLVVVLSAAGLDAKPT 60

Query: 61  VLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 120
           VLVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG
Sbjct: 61  VLVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 120

Query: 121 RLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 180
           RLKVVGRAGVGIDNVDL AATE GCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV
Sbjct: 121 RLKVVGRAGVGIDNVDLGAATEFGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 180

Query: 181 KAG 183
           KAG
Sbjct: 181 KAG 182

[Close]
BLAST of Lsi05G002340.1 vs. TrEMBL
Match: A0A151U7Q0_CAJCA (D-3-phosphoglycerate dehydrogenase OS=Cajanus cajan GN=KK1_008047 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.5e-67
Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA ++S TLR P+L      SLSSKLP+ SAFSV+LRPR       V+LVSA+L+AKPTV
Sbjct: 1   MATASSQTLRFPTLS----LSLSSKLPLSSAFSVSLRPRRRP---LVLLVSAALDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLSPEELCTKISLCDALIVRSGTKV+REVFESS GR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 175

Query: 181 AG 183
           AG
Sbjct: 181 AG 175

[Close]
BLAST of Lsi05G002340.1 vs. TAIR10
Match: AT4G34200.1 (AT4G34200.1 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 135/184 (73.37%), Postives = 149/184 (80.98%), Query Frame = 1 

Query: 2   AASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAAL-RFVVLVSASLN--AKP 61
           AAS+S  + T SLRN  LSS S   P+PSA SV    R    L R +VLVS S    +KP
Sbjct: 6   AASSSIAVATNSLRNVTLSSRS---PLPSAISVAFPSRGRNTLQRRLVLVSCSTGDGSKP 65

Query: 62  TVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSG 121
           T+LVAEKLG AG+ LL++ ANVDCSYN++PEEL  KISLCDALIVRSGTKV REVFESS 
Sbjct: 66  TILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSH 125

Query: 122 GRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADAS 181
           GRLKVVGRAGVGIDNVDL+AATE GCLVVNAPTANT+AAAEHGIAL+ AMARNVAQADAS
Sbjct: 126 GRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADAS 185

Query: 182 VKAG 183
           VKAG
Sbjct: 186 VKAG 186

[Close]
BLAST of Lsi05G002340.1 vs. TAIR10
Match: AT3G19480.1 (AT3G19480.1 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-57
Identity = 123/168 (73.21%), Postives = 139/168 (82.74%), Query Frame = 1 

Query: 16  NSVLSSLSSKLPVPSA-FSVNLRPRSVAALRFVVLVSASLNAKPTVLVAEKLGAAGLDLL 75
           +S+ SS S  +  PS+ F +  R R +     V   S+    KPT+LV EKLG AG+DLL
Sbjct: 8   SSIFSSSSRLVTTPSSVFPIRQRRRII----LVTSSSSGGGGKPTILVTEKLGQAGIDLL 67

Query: 76  KEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNV 135
           K++ANVDCSY+LS EELCTKISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVGIDNV
Sbjct: 68  KKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRGRLKVVGRAGVGIDNV 127

Query: 136 DLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAG 183
           DLAAATE+GCLVVNAPTANTVAAAEHGIALLTAMARN+AQADAS+KAG
Sbjct: 128 DLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAG 171

[Close]
BLAST of Lsi05G002340.1 vs. TAIR10
Match: AT1G17745.2 (AT1G17745.2 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 197.2 bits (500), Expect = 9.1e-51
Identity = 102/127 (80.31%), Postives = 116/127 (91.34%), Query Frame = 1 

Query: 57  KPTVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFES 116
           KP +LV EKLG AG++LL+EF +VDCSY+LSPE+L  K++  DALIVRSGTKV+REVFE+
Sbjct: 82  KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141

Query: 117 SGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQAD 176
           + GRLKVVGRAGVGIDNVDL AATEHGCLVVNAPTANTVAAAEHGIALL +MARNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201

Query: 177 ASVKAGT 184
           AS+KAGT
Sbjct: 202 ASIKAGT 208

[Close]
BLAST of Lsi05G002340.1 vs. NCBI nr
Match: gi|449445906|ref|XP_004140713.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 4.1e-85
Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MAASASPTLRTPSLRNS+ SSLSSKLP+PSAFSVNLRPRSVAA RFVVLVSASLNAKPTV
Sbjct: 1   MAASASPTLRTPSLRNSLFSSLSSKLPLPSAFSVNLRPRSVAAPRFVVLVSASLNAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180

Query: 181 AG 183
           AG
Sbjct: 181 AG 182

[Close]
BLAST of Lsi05G002340.1 vs. NCBI nr
Match: gi|659112319|ref|XP_008456163.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 5.9e-84
Identity = 175/182 (96.15%), Postives = 177/182 (97.25%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MAASASPTLRTPSLR S+LSS SSKLP+PSAFSVNLRPRSV A RFVVLVSASLNAKPTV
Sbjct: 1   MAASASPTLRTPSLRTSLLSSFSSKLPLPSAFSVNLRPRSVGAPRFVVLVSASLNAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180

Query: 181 AG 183
           AG
Sbjct: 181 AG 182

[Close]
BLAST of Lsi05G002340.1 vs. NCBI nr
Match: gi|965607416|dbj|BAT93907.1| (hypothetical protein VIGAN_08045900 [Vigna angularis var. angularis])

HSP 1 Score: 268.9 bits (686), Expect = 7.0e-69
Identity = 153/182 (84.07%), Postives = 160/182 (87.91%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340.1 vs. NCBI nr
Match: gi|951028991|ref|XP_014514567.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68
Identity = 153/182 (84.07%), Postives = 161/182 (88.46%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SP+LR PS       SLSS+LP+ SAFSV+LRPR  A+   VVLVSA L+AKPTV
Sbjct: 1   MATATSPSLRFPSPS----LSLSSRLPLSSAFSVSLRPRRGASRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340.1 vs. NCBI nr
Match: gi|920693031|gb|KOM36256.1| (hypothetical protein LR48_Vigan02g240600 [Vigna angularis])

HSP 1 Score: 266.5 bits (680), Expect = 3.5e-68
Identity = 152/182 (83.52%), Postives = 159/182 (87.36%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGR GVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRDGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

The following BLAST results are available for this feature:
BLAST of Lsi05G002340.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SERA1_ARATH2.1e-5773.37D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA3_ARATH4.0e-5673.21D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA2_ARATH6.1e-4980.16D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA_METTH6.8e-2448.78D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (st... [more]
SERA_SYNY31.5e-2345.45D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
BLAST of Lsi05G002340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBW6_CUCSA2.8e-8597.25D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus GN=Csa_3G199630 PE=3 SV=1[more]
A0A0S3SM32_PHAAN4.9e-6984.07D-3-phosphoglycerate dehydrogenase OS=Vigna angularis var. angularis GN=Vigan.08... [more]
A0A0L9U0H0_PHAAN2.4e-6883.52D-3-phosphoglycerate dehydrogenase OS=Phaseolus angularis GN=LR48_Vigan02g240600... [more]
M5VIT2_PRUPE2.0e-6784.15D-3-phosphoglycerate dehydrogenase OS=Prunus persica GN=PRUPE_ppa003143mg PE=3 S... [more]
A0A151U7Q0_CAJCA3.5e-6782.97D-3-phosphoglycerate dehydrogenase OS=Cajanus cajan GN=KK1_008047 PE=3 SV=1[more]
BLAST of Lsi05G002340.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34200.11.2e-5873.37 D-3-phosphoglycerate dehydrogenase[more]
AT3G19480.12.2e-5773.21 D-3-phosphoglycerate dehydrogenase[more]
AT1G17745.29.1e-5180.31 D-3-phosphoglycerate dehydrogenase[more]
BLAST of Lsi05G002340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445906|ref|XP_004140713.1|4.1e-8597.25PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucumis sat... [more]
gi|659112319|ref|XP_008456163.1|5.9e-8496.15PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic [Cucumis melo][more]
gi|965607416|dbj|BAT93907.1|7.0e-6984.07hypothetical protein VIGAN_08045900 [Vigna angularis var. angularis][more]
gi|951028991|ref|XP_014514567.1|1.2e-6884.07PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Vigna radia... [more]
gi|920693031|gb|KOM36256.1|3.5e-6883.52hypothetical protein LR48_Vigan02g240600 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0051287NAD binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR006139D-isomer_2_OHA_DH_cat_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006564 L-serine biosynthetic process
biological_process GO:0006566 threonine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051287 NAD binding
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
molecular_function GO:0016597 amino acid binding
molecular_function GO:0004617 phosphoglycerate dehydrogenase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi05G002340Lsi05G002340gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G002340.1.CDS.1Lsi05G002340.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi05G002340.1Lsi05G002340.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainPFAMPF003892-Hacid_dhcoord: 60..175
score: 3.8
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 57..184
score: 3.0
NoneNo IPR availablePANTHERPTHR109962-HYDROXYACID DEHYDROGENASE-RELATEDcoord: 47..182
score: 8.8E
NoneNo IPR availablePANTHERPTHR10996:SF159D-3-PHOSPHOGLYCERATE DEHYDROGENASEcoord: 47..182
score: 8.8E
NoneNo IPR availableunknownSSF52283Formate/glycerate dehydrogenase catalytic domain-likecoord: 57..184
score: 4.16