Lsi05G002340 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G002340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionD-3-phosphoglycerate dehydrogenase
Locationchr05 : 3098116 .. 3098688 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCTCCGCTTCACCTACGCTCCGTACACCGTCGTTAAGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTGTTCCTTCGGCTTTTTCTGTTAATCTTCGTCCACGGAGTGTTGCCGCGCTGCGGTTTGTGGTGTTGGTTTCTGCGTCTCTGAATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGGGCAGCGGGTCTTGATCTTCTTAAGGAATTTGCTAATGTTGATTGTTCCTATAATCTGAGTCCTGAGGAGCTTTGTACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGCGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGAGCTGGTGTTGGCATTGACAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCCACTGCTAACACGGTAGCTGCCGCTGAGCATGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCATCTGTTAAAGCTGGTACGTTTTTCGTTTTCTGTTTTGCTTGA

mRNA sequence

ATGGCTGCCTCCGCTTCACCTACGCTCCGTACACCGTCGTTAAGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTGTTCCTTCGGCTTTTTCTGTTAATCTTCGTCCACGGAGTGTTGCCGCGCTGCGGTTTGTGGTGTTGGTTTCTGCGTCTCTGAATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGGGCAGCGGGTCTTGATCTTCTTAAGGAATTTGCTAATGTTGATTGTTCCTATAATCTGAGTCCTGAGGAGCTTTGTACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGCGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGAGCTGGTGTTGGCATTGACAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCCACTGCTAACACGGTAGCTGCCGCTGAGCATGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCATCTGTTAAAGCTGGTACGTTTTTCGTTTTCTGTTTTGCTTGA

Coding sequence (CDS)

ATGGCTGCCTCCGCTTCACCTACGCTCCGTACACCGTCGTTAAGGAACTCGGTACTTTCTTCTCTCTCTTCTAAGCTTCCTGTTCCTTCGGCTTTTTCTGTTAATCTTCGTCCACGGAGTGTTGCCGCGCTGCGGTTTGTGGTGTTGGTTTCTGCGTCTCTGAATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGGGCAGCGGGTCTTGATCTTCTTAAGGAATTTGCTAATGTTGATTGTTCCTATAATCTGAGTCCTGAGGAGCTTTGTACCAAGATCTCGCTCTGTGATGCGCTTATTGTGCGGAGTGGGACTAAGGTCAGCCGCGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGAGCTGGTGTTGGCATTGACAATGTGGATCTGGCGGCCGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCCACTGCTAACACGGTAGCTGCCGCTGAGCATGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCCCAAGCCGATGCATCTGTTAAAGCTGGTACGTTTTTCGTTTTCTGTTTTGCTTGA

Protein sequence

MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGTFFVFCFA
Homology
[Close]
BLAST of Lsi05G002340 vs. Swiss-Prot
Match: SERA1_ARATH (D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=PGDH1 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 135/184 (73.37%), Postives = 149/184 (80.98%), Query Frame = 1 

Query: 2   AASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAAL-RFVVLVSASLN--AKP 61
           AAS+S  + T SLRN  LSS S   P+PSA SV    R    L R +VLVS S    +KP
Sbjct: 6   AASSSIAVATNSLRNVTLSSRS---PLPSAISVAFPSRGRNTLQRRLVLVSCSTGDGSKP 65

Query: 62  TVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSG 121
           T+LVAEKLG AG+ LL++ ANVDCSYN++PEEL  KISLCDALIVRSGTKV REVFESS 
Sbjct: 66  TILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSH 125

Query: 122 GRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADAS 181
           GRLKVVGRAGVGIDNVDL+AATE GCLVVNAPTANT+AAAEHGIAL+ AMARNVAQADAS
Sbjct: 126 GRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADAS 185

Query: 182 VKAG 183
           VKAG
Sbjct: 186 VKAG 186

[Close]
BLAST of Lsi05G002340 vs. Swiss-Prot
Match: SERA3_ARATH (D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=PGDH3 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-56
Identity = 123/168 (73.21%), Postives = 139/168 (82.74%), Query Frame = 1 

Query: 16  NSVLSSLSSKLPVPSA-FSVNLRPRSVAALRFVVLVSASLNAKPTVLVAEKLGAAGLDLL 75
           +S+ SS S  +  PS+ F +  R R +     V   S+    KPT+LV EKLG AG+DLL
Sbjct: 8   SSIFSSSSRLVTTPSSVFPIRQRRRII----LVTSSSSGGGGKPTILVTEKLGQAGIDLL 67

Query: 76  KEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNV 135
           K++ANVDCSY+LS EELCTKISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVGIDNV
Sbjct: 68  KKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRGRLKVVGRAGVGIDNV 127

Query: 136 DLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAG 183
           DLAAATE+GCLVVNAPTANTVAAAEHGIALLTAMARN+AQADAS+KAG
Sbjct: 128 DLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAG 171

[Close]
BLAST of Lsi05G002340 vs. Swiss-Prot
Match: SERA2_ARATH (D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=PGDH2 PE=1 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 6.1e-49
Identity = 101/126 (80.16%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 57  KPTVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFES 116
           KP +LV EKLG AG++LL+EF +VDCSY+LSPE+L  K++  DALIVRSGTKV+REVFE+
Sbjct: 82  KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141

Query: 117 SGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQAD 176
           + GRLKVVGRAGVGIDNVDL AATEHGCLVVNAPTANTVAAAEHGIALL +MARNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201

Query: 177 ASVKAG 183
           AS+KAG
Sbjct: 202 ASIKAG 207

[Close]
BLAST of Lsi05G002340 vs. Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-24
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 60  VLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 119
           VL+A+ +   G+  L+E A V  +  ++PEEL   I   DA++VRS TKV+REV E++  
Sbjct: 6   VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAP- 65

Query: 120 RLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 179
           RLK++ RAGVG+DNVD+ AAT+ G +V+NAP + ++  AEH I L+ A+AR +A AD SV
Sbjct: 66  RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSV 125

Query: 180 KAG 183
           K G
Sbjct: 126 KEG 127

[Close]
BLAST of Lsi05G002340 vs. Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=serA PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 55/121 (45.45%), Postives = 87/121 (71.90%), Query Frame = 1 

Query: 60  VLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 119
           VLV++ +   G+D+LK+ A VD    LS  E+   +   DA+++RS TKV+ ++ ++ G 
Sbjct: 32  VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQA-GS 91

Query: 120 RLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 179
           +LK++GRAGVG+DN+D+ AAT  G +VVN+P  NT+AAAEH +A++ A+AR++  A+ SV
Sbjct: 92  QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSV 151

Query: 180 K 181
           K
Sbjct: 152 K 151

[Close]
BLAST of Lsi05G002340 vs. TrEMBL
Match: A0A0A0LBW6_CUCSA (D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus GN=Csa_3G199630 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.8e-85
Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MAASASPTLRTPSLRNS+ SSLSSKLP+PSAFSVNLRPRSVAA RFVVLVSASLNAKPTV
Sbjct: 1   MAASASPTLRTPSLRNSLFSSLSSKLPLPSAFSVNLRPRSVAAPRFVVLVSASLNAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180

Query: 181 AG 183
           AG
Sbjct: 181 AG 182

[Close]
BLAST of Lsi05G002340 vs. TrEMBL
Match: A0A0S3SM32_PHAAN (D-3-phosphoglycerate dehydrogenase OS=Vigna angularis var. angularis GN=Vigan.08G045900 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.9e-69
Identity = 153/182 (84.07%), Postives = 160/182 (87.91%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340 vs. TrEMBL
Match: A0A0L9U0H0_PHAAN (D-3-phosphoglycerate dehydrogenase OS=Phaseolus angularis GN=LR48_Vigan02g240600 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-68
Identity = 152/182 (83.52%), Postives = 159/182 (87.36%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGR GVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRDGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340 vs. TrEMBL
Match: M5VIT2_PRUPE (D-3-phosphoglycerate dehydrogenase OS=Prunus persica GN=PRUPE_ppa003143mg PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 154/183 (84.15%), Postives = 160/183 (87.43%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSAS-LNAKPT 60
           MA SA   LRTP LRN  LS LSSK  + S F V+L  R  AA R VV++SA+ L+AKPT
Sbjct: 1   MATSAPHALRTPFLRNPTLS-LSSKPTLSSVFPVSLSSRRRAAPRLVVVLSAAGLDAKPT 60

Query: 61  VLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 120
           VLVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG
Sbjct: 61  VLVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGG 120

Query: 121 RLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 180
           RLKVVGRAGVGIDNVDL AATE GCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV
Sbjct: 121 RLKVVGRAGVGIDNVDLGAATEFGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASV 180

Query: 181 KAG 183
           KAG
Sbjct: 181 KAG 182

[Close]
BLAST of Lsi05G002340 vs. TrEMBL
Match: A0A151U7Q0_CAJCA (D-3-phosphoglycerate dehydrogenase OS=Cajanus cajan GN=KK1_008047 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.5e-67
Identity = 151/182 (82.97%), Postives = 161/182 (88.46%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA ++S TLR P+L      SLSSKLP+ SAFSV+LRPR       V+LVSA+L+AKPTV
Sbjct: 1   MATASSQTLRFPTLS----LSLSSKLPLSSAFSVSLRPRRRP---LVLLVSAALDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLSPEELCTKISLCDALIVRSGTKV+REVFESS GR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 175

Query: 181 AG 183
           AG
Sbjct: 181 AG 175

[Close]
BLAST of Lsi05G002340 vs. TAIR10
Match: AT4G34200.1 (AT4G34200.1 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 135/184 (73.37%), Postives = 149/184 (80.98%), Query Frame = 1 

Query: 2   AASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAAL-RFVVLVSASLN--AKP 61
           AAS+S  + T SLRN  LSS S   P+PSA SV    R    L R +VLVS S    +KP
Sbjct: 6   AASSSIAVATNSLRNVTLSSRS---PLPSAISVAFPSRGRNTLQRRLVLVSCSTGDGSKP 65

Query: 62  TVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSG 121
           T+LVAEKLG AG+ LL++ ANVDCSYN++PEEL  KISLCDALIVRSGTKV REVFESS 
Sbjct: 66  TILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSH 125

Query: 122 GRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADAS 181
           GRLKVVGRAGVGIDNVDL+AATE GCLVVNAPTANT+AAAEHGIAL+ AMARNVAQADAS
Sbjct: 126 GRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADAS 185

Query: 182 VKAG 183
           VKAG
Sbjct: 186 VKAG 186

[Close]
BLAST of Lsi05G002340 vs. TAIR10
Match: AT3G19480.1 (AT3G19480.1 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-57
Identity = 123/168 (73.21%), Postives = 139/168 (82.74%), Query Frame = 1 

Query: 16  NSVLSSLSSKLPVPSA-FSVNLRPRSVAALRFVVLVSASLNAKPTVLVAEKLGAAGLDLL 75
           +S+ SS S  +  PS+ F +  R R +     V   S+    KPT+LV EKLG AG+DLL
Sbjct: 8   SSIFSSSSRLVTTPSSVFPIRQRRRII----LVTSSSSGGGGKPTILVTEKLGQAGIDLL 67

Query: 76  KEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNV 135
           K++ANVDCSY+LS EELCTKISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVGIDNV
Sbjct: 68  KKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFESSRGRLKVVGRAGVGIDNV 127

Query: 136 DLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAG 183
           DLAAATE+GCLVVNAPTANTVAAAEHGIALLTAMARN+AQADAS+KAG
Sbjct: 128 DLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAG 171

[Close]
BLAST of Lsi05G002340 vs. TAIR10
Match: AT1G17745.2 (AT1G17745.2 D-3-phosphoglycerate dehydrogenase)

HSP 1 Score: 197.2 bits (500), Expect = 9.1e-51
Identity = 102/127 (80.31%), Postives = 116/127 (91.34%), Query Frame = 1 

Query: 57  KPTVLVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFES 116
           KP +LV EKLG AG++LL+EF +VDCSY+LSPE+L  K++  DALIVRSGTKV+REVFE+
Sbjct: 82  KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141

Query: 117 SGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQAD 176
           + GRLKVVGRAGVGIDNVDL AATEHGCLVVNAPTANTVAAAEHGIALL +MARNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201

Query: 177 ASVKAGT 184
           AS+KAGT
Sbjct: 202 ASIKAGT 208

[Close]
BLAST of Lsi05G002340 vs. NCBI nr
Match: gi|449445906|ref|XP_004140713.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 4.1e-85
Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MAASASPTLRTPSLRNS+ SSLSSKLP+PSAFSVNLRPRSVAA RFVVLVSASLNAKPTV
Sbjct: 1   MAASASPTLRTPSLRNSLFSSLSSKLPLPSAFSVNLRPRSVAAPRFVVLVSASLNAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180

Query: 181 AG 183
           AG
Sbjct: 181 AG 182

[Close]
BLAST of Lsi05G002340 vs. NCBI nr
Match: gi|659112319|ref|XP_008456163.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 5.9e-84
Identity = 175/182 (96.15%), Postives = 177/182 (97.25%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MAASASPTLRTPSLR S+LSS SSKLP+PSAFSVNLRPRSV A RFVVLVSASLNAKPTV
Sbjct: 1   MAASASPTLRTPSLRTSLLSSFSSKLPLPSAFSVNLRPRSVGAPRFVVLVSASLNAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGEAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180

Query: 181 AG 183
           AG
Sbjct: 181 AG 182

[Close]
BLAST of Lsi05G002340 vs. NCBI nr
Match: gi|965607416|dbj|BAT93907.1| (hypothetical protein VIGAN_08045900 [Vigna angularis var. angularis])

HSP 1 Score: 268.9 bits (686), Expect = 7.0e-69
Identity = 153/182 (84.07%), Postives = 160/182 (87.91%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340 vs. NCBI nr
Match: gi|951028991|ref|XP_014514567.1| (PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68
Identity = 153/182 (84.07%), Postives = 161/182 (88.46%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SP+LR PS       SLSS+LP+ SAFSV+LRPR  A+   VVLVSA L+AKPTV
Sbjct: 1   MATATSPSLRFPSPS----LSLSSRLPLSSAFSVSLRPRRGASRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

[Close]
BLAST of Lsi05G002340 vs. NCBI nr
Match: gi|920693031|gb|KOM36256.1| (hypothetical protein LR48_Vigan02g240600 [Vigna angularis])

HSP 1 Score: 266.5 bits (680), Expect = 3.5e-68
Identity = 152/182 (83.52%), Postives = 159/182 (87.36%), Query Frame = 1 

Query: 1   MAASASPTLRTPSLRNSVLSSLSSKLPVPSAFSVNLRPRSVAALRFVVLVSASLNAKPTV 60
           MA + SPTLR PS       SLSS+LP+ SAFS++LRPR  A    VVLVSA L+AKPTV
Sbjct: 1   MATATSPTLRFPSPS----LSLSSRLPLSSAFSISLRPRRGACRPLVVLVSAGLDAKPTV 60

Query: 61  LVAEKLGAAGLDLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGR 120
           LVAEKLG AGL LLK+FANVDCSYNLS EELCTKISLCDALIVRSGTKVSREVFESSGGR
Sbjct: 61  LVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSGGR 120

Query: 121 LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVK 180
           LKVVGR GVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK
Sbjct: 121 LKVVGRDGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 178

Query: 181 AG 183
           AG
Sbjct: 181 AG 178

The following BLAST results are available for this feature:
BLAST of Lsi05G002340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SERA1_ARATH2.1e-5773.37D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA3_ARATH4.0e-5673.21D-3-phosphoglycerate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA2_ARATH6.1e-4980.16D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
SERA_METTH6.8e-2448.78D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (st... [more]
SERA_SYNY31.5e-2345.45D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
BLAST of Lsi05G002340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBW6_CUCSA2.8e-8597.25D-3-phosphoglycerate dehydrogenase OS=Cucumis sativus GN=Csa_3G199630 PE=3 SV=1[more]
A0A0S3SM32_PHAAN4.9e-6984.07D-3-phosphoglycerate dehydrogenase OS=Vigna angularis var. angularis GN=Vigan.08... [more]
A0A0L9U0H0_PHAAN2.4e-6883.52D-3-phosphoglycerate dehydrogenase OS=Phaseolus angularis GN=LR48_Vigan02g240600... [more]
M5VIT2_PRUPE2.0e-6784.15D-3-phosphoglycerate dehydrogenase OS=Prunus persica GN=PRUPE_ppa003143mg PE=3 S... [more]
A0A151U7Q0_CAJCA3.5e-6782.97D-3-phosphoglycerate dehydrogenase OS=Cajanus cajan GN=KK1_008047 PE=3 SV=1[more]
BLAST of Lsi05G002340 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34200.11.2e-5873.37 D-3-phosphoglycerate dehydrogenase[more]
AT3G19480.12.2e-5773.21 D-3-phosphoglycerate dehydrogenase[more]
AT1G17745.29.1e-5180.31 D-3-phosphoglycerate dehydrogenase[more]
BLAST of Lsi05G002340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445906|ref|XP_004140713.1|4.1e-8597.25PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Cucumis sat... [more]
gi|659112319|ref|XP_008456163.1|5.9e-8496.15PREDICTED: D-3-phosphoglycerate dehydrogenase, chloroplastic [Cucumis melo][more]
gi|965607416|dbj|BAT93907.1|7.0e-6984.07hypothetical protein VIGAN_08045900 [Vigna angularis var. angularis][more]
gi|951028991|ref|XP_014514567.1|1.2e-6884.07PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Vigna radia... [more]
gi|920693031|gb|KOM36256.1|3.5e-6883.52hypothetical protein LR48_Vigan02g240600 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0051287NAD binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR006139D-isomer_2_OHA_DH_cat_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006564 L-serine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016597 amino acid binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0004617 phosphoglycerate dehydrogenase activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002340.1Lsi05G002340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domainPFAMPF003892-Hacid_dhcoord: 60..175
score: 3.8
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 57..184
score: 3.0
NoneNo IPR availablePANTHERPTHR109962-HYDROXYACID DEHYDROGENASE-RELATEDcoord: 47..182
score: 8.8E
NoneNo IPR availablePANTHERPTHR10996:SF159D-3-PHOSPHOGLYCERATE DEHYDROGENASEcoord: 47..182
score: 8.8E
NoneNo IPR availableunknownSSF52283Formate/glycerate dehydrogenase catalytic domain-likecoord: 57..184
score: 4.16

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G002340Cla013094Watermelon (97103) v1lsiwmB361
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G002340Bottle gourd (USVL1VR-Ls)lsilsiB080
Lsi05G002340Bottle gourd (USVL1VR-Ls)lsilsiB132
Lsi05G002340Cucumber (Gy14) v1cgylsiB369
Lsi05G002340Cucumber (Gy14) v1cgylsiB404
Lsi05G002340Cucurbita maxima (Rimu)cmalsiB127
Lsi05G002340Cucurbita maxima (Rimu)cmalsiB316
Lsi05G002340Cucurbita maxima (Rimu)cmalsiB493
Lsi05G002340Cucurbita maxima (Rimu)cmalsiB690
Lsi05G002340Cucurbita moschata (Rifu)cmolsiB116
Lsi05G002340Cucurbita moschata (Rifu)cmolsiB304
Lsi05G002340Cucurbita moschata (Rifu)cmolsiB478
Lsi05G002340Cucurbita moschata (Rifu)cmolsiB683
Lsi05G002340Cucurbita pepo (Zucchini)cpelsiB177
Lsi05G002340Cucurbita pepo (Zucchini)cpelsiB369
Lsi05G002340Cucurbita pepo (Zucchini)cpelsiB554
Lsi05G002340Wild cucumber (PI 183967)cpilsiB209
Lsi05G002340Wild cucumber (PI 183967)cpilsiB541
Lsi05G002340Cucumber (Chinese Long) v2culsiB211
Lsi05G002340Cucumber (Chinese Long) v2culsiB527
Lsi05G002340Melon (DHL92) v3.5.1lsimeB346
Lsi05G002340Melon (DHL92) v3.5.1lsimeB368
Lsi05G002340Melon (DHL92) v3.5.1lsimeB388
Lsi05G002340Watermelon (Charleston Gray)lsiwcgB330
Lsi05G002340Watermelon (Charleston Gray)lsiwcgB332
Lsi05G002340Watermelon (97103) v1lsiwmB380
Lsi05G002340Cucumber (Gy14) v2cgyblsiB198
Lsi05G002340Cucumber (Gy14) v2cgyblsiB496
Lsi05G002340Melon (DHL92) v3.6.1lsimedB363
Lsi05G002340Melon (DHL92) v3.6.1lsimedB384
Lsi05G002340Melon (DHL92) v3.6.1lsimedB409
Lsi05G002340Silver-seed gourdcarlsiB270
Lsi05G002340Silver-seed gourdcarlsiB346
Lsi05G002340Cucumber (Chinese Long) v3cuclsiB230
Lsi05G002340Cucumber (Chinese Long) v3cuclsiB562
Lsi05G002340Watermelon (97103) v2lsiwmbB326
Lsi05G002340Watermelon (97103) v2lsiwmbB317
Lsi05G002340Watermelon (97103) v2lsiwmbB329
Lsi05G002340Wax gourdlsiwgoB431
Lsi05G002340Wax gourdlsiwgoB458
Lsi05G002340Wax gourdlsiwgoB468