Lsi05G001260.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001260.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 1923877 .. 1925554 (-)
Sequence length	258

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATATCAAAGTAAAATATTTGATTTATTCACTCCATTGAAGGTTGTTTTATCATTATTACCCAAATTTGTAGTTGGTTAGTATAGTACTTACCATAAATATTAGGAAAGTGGTAATTTTTAAAACCAAACATTCACCTCACCCCATAATTGAGCCAAGCTCAGATTTTACTATTTGAGATTTAGTTTTATTGATTAATTTTTTTTCCAGATTTTAAATGGTTAATATCTATTTTTCTCAAATACTCATATGTCTATTAATCAATTTAAAATAATTATGAAGTGAACTTTTCAATTAAATTTTGAAAGTGATAAAAATAGTAAAACTTGTTTAATTATAATTTTTTTAATAAAAAATCGAGATAAAAATGTAAAATCTCATAATATAGGGATTAAATTGAAAAAAATTAAATTTTAAGAGTAAAATTGTAATATTATAAAAGTAACCGAATAAATTGGAATGAAATTTAAAACTAAAAGAAAGTGATATTTTGAAACTAAGGTAAAGCAAATNCTCCACGTATTGTTTAAGAAGAATTGATGGCAAATATCAAAGTAAAATATTTGATTTATTCACTCCATTGAAGGTTGTTTTATCATTATTACCCAAATTTGTAGTTGGTTAGTATAGTACTTACCATAAATATTAGGAAAGTGGTAATTTTTAAAACCAAACATTCACCTCACCCCATAATTGAGCCAAGCTCAGATTTTACTATTTGAGATTTAGTTTATTTCAATTTGATTAATTTTTTTTCCAGATTTTAAATGGTTAATATCGATTTTTCTCAAATACTCATATTTAATCATTGACATCAACGTCTATTAATCAATTTAAAATAATTATGAAGTGAACTTTTCAATTAAATTTTGAAAGTGATAAAAATAGTAAAACTTGATTAATTATAATTTTTTTAATAAAAAATCGAGATAAAAATGTAAAATCTCATAACATAGGGATTAAATTGAAAAAAATTAAATTTTAAGAGTAAAATTGTAATATTATAAAAGTAACCGAATAAATTGGAATGAAATTTAAAACTAAAAGAAAGTGATATTTTGAAACTAAGGTAAAGCAAATATTTTTTTTTCTCATAATATTATTAAAAACAATGTTGAATGGATAAATTGGAGGGTTGGGTATGAATTATGAATTATTATATGAAATTATGAATGATGATGATGATGATGCGGCGTCGTTTTAAGGAATAATCCGTGAAGAAGAGCAAAAAGTTAAAAAGAATCTGGGAGGGACGAGACTTGTTGACGGAGTAATCCAGTTGTTGTGAGTGTTTCTTCTTCTTCATCTCCATTCTTTCTGAAATTCTGCATCTACAGAAAGAGAGAGAGACACAAACAAATGGAAGTTCTCTCCTTCTGTTCTCTTCTCGCAACTTGTAAAACCTAACCCCATGCCCTCGCCTTTCATAGCTTTCACTTCCATTACCTTCACTTTCCAAGGTCTACACTAGTTCCAAGGATAAGGTACCAAGATCTGTATCTTCTTCCCCCTCTATGATTGCCTCCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCCTCTTCTCCCGGATGATGGCCGGGACACGCCCCAATGCAGCCGTCGCGGTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGTAA

mRNA sequence

ATGGCAAATATCAAACTTTCACTTCCATTACCTTCACTTTCCAAGGTCTACACTAGTTCCAAGGATAAGGTACCAAGATCTGTATCTTCTTCCCCCTCTATGATTGCCTCCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCCTCTTCTCCCGGATGATGGCCGGGACACGCCCCAATGCAGCCGTCGCGGTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGTAA

Coding sequence (CDS)

ATGGCAAATATCAAACTTTCACTTCCATTACCTTCACTTTCCAAGGTCTACACTAGTTCCAAGGATAAGGTACCAAGATCTGTATCTTCTTCCCCCTCTATGATTGCCTCCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCCTCTTCTCCCGGATGATGGCCGGGACACGCCCCAATGCAGCCGTCGCGGTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGTAA

Protein sequence

MANIKLSLPLPSLSKVYTSSKDKVPRSVSSSPSMIASGTDIAPSFGVGGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR

Homology

[Close]

BLAST of Lsi05G001260.1 vs. TrEMBL
Match: A0A0A0L793_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238090 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-12
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 34 MIASGTDIAPSFGV---GGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR 86
          MIASGTDI+ SFGV   GGGLFSR+MA TRPNAAVA TALAGLAVV VLFYSASR
Sbjct: 1  MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASR 55

[Close]

BLAST of Lsi05G001260.1 vs. NCBI nr
Match: gi|778680382|ref|XP_011651302.1| (PREDICTED: small G protein signaling modulator 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-12
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 34 MIASGTDIAPSFGV---GGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR 86
          MIASGTDI+ SFGV   GGGLFSR+MA TRPNAAVA TALAGLAVV VLFYSASR
Sbjct: 1  MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASR 55

[Close]

BLAST of Lsi05G001260.1 vs. NCBI nr
Match: gi|659111972|ref|XP_008456003.1| (PREDICTED: TBC1 domain family member 15-like isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-12
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 34 MIASGTDIAPSFGV---GGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR 86
          MIASGTDI+ SFGV   GGGLFSR+MA TRPNAAVA TALAGLAVV VLFYSASR
Sbjct: 1  MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASR 55

The following BLAST results are available for this feature:

BLAST of Lsi05G001260.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G001260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L793_CUCSA	5.4e-12	83.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238090 PE=4 SV=1	[more]

BLAST of Lsi05G001260.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G001260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680382\|ref\|XP_011651302.1\|	7.8e-12	83.64	PREDICTED: small G protein signaling modulator 1 isoform X2 [Cucumis sativus]	[more]
gi\|659111972\|ref\|XP_008456003.1\|	7.8e-12	83.64	PREDICTED: TBC1 domain family member 15-like isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G001260	Lsi05G001260	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G001260.1.CDS.2	Lsi05G001260.1.CDS.2	CDS
Lsi05G001260.1.CDS.1	Lsi05G001260.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G001260.1	Lsi05G001260.1-protein	polypeptide