Lsi05G001260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G001260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 1923877 .. 1925554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATATCAAAGTAAAATATTTGATTTATTCACTCCATTGAAGGTTGTTTTATCATTATTACCCAAATTTGTAGTTGGTTAGTATAGTACTTACCATAAATATTAGGAAAGTGGTAATTTTTAAAACCAAACATTCACCTCACCCCATAATTGAGCCAAGCTCAGATTTTACTATTTGAGATTTAGTTTTATTGATTAATTTTTTTTCCAGATTTTAAATGGTTAATATCTATTTTTCTCAAATACTCATATGTCTATTAATCAATTTAAAATAATTATGAAGTGAACTTTTCAATTAAATTTTGAAAGTGATAAAAATAGTAAAACTTGTTTAATTATAATTTTTTTAATAAAAAATCGAGATAAAAATGTAAAATCTCATAATATAGGGATTAAATTGAAAAAAATTAAATTTTAAGAGTAAAATTGTAATATTATAAAAGTAACCGAATAAATTGGAATGAAATTTAAAACTAAAAGAAAGTGATATTTTGAAACTAAGGTAAAGCAAATNCTCCACGTATTGTTTAAGAAGAATTGATGGCAAATATCAAAGTAAAATATTTGATTTATTCACTCCATTGAAGGTTGTTTTATCATTATTACCCAAATTTGTAGTTGGTTAGTATAGTACTTACCATAAATATTAGGAAAGTGGTAATTTTTAAAACCAAACATTCACCTCACCCCATAATTGAGCCAAGCTCAGATTTTACTATTTGAGATTTAGTTTATTTCAATTTGATTAATTTTTTTTCCAGATTTTAAATGGTTAATATCGATTTTTCTCAAATACTCATATTTAATCATTGACATCAACGTCTATTAATCAATTTAAAATAATTATGAAGTGAACTTTTCAATTAAATTTTGAAAGTGATAAAAATAGTAAAACTTGATTAATTATAATTTTTTTAATAAAAAATCGAGATAAAAATGTAAAATCTCATAACATAGGGATTAAATTGAAAAAAATTAAATTTTAAGAGTAAAATTGTAATATTATAAAAGTAACCGAATAAATTGGAATGAAATTTAAAACTAAAAGAAAGTGATATTTTGAAACTAAGGTAAAGCAAATATTTTTTTTTCTCATAATATTATTAAAAACAATGTTGAATGGATAAATTGGAGGGTTGGGTATGAATTATGAATTATTATATGAAATTATGAATGATGATGATGATGATGCGGCGTCGTTTTAAGGAATAATCCGTGAAGAAGAGCAAAAAGTTAAAAAGAATCTGGGAGGGACGAGACTTGTTGACGGAGTAATCCAGTTGTTGTGAGTGTTTCTTCTTCTTCATCTCCATTCTTTCTGAAATTCTGCATCTACAGAAAGAGAGAGAGACACAAACAAATGGAAGTTCTCTCCTTCTGTTCTCTTCTCGCAACTTGTAAAACCTAACCCCATGCCCTCGCCTTTCATAGCTTTCACTTCCATTACCTTCACTTTCCAAGGTCTACACTAGTTCCAAGGATAAGGTACCAAGATCTGTATCTTCTTCCCCCTCTATGATTGCCTCCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCCTCTTCTCCCGGATGATGGCCGGGACACGCCCCAATGCAGCCGTCGCGGTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGTAA

mRNA sequence

ATGGCAAATATCAAACTTTCACTTCCATTACCTTCACTTTCCAAGGTCTACACTAGTTCCAAGGATAAGGTACCAAGATCTGTATCTTCTTCCCCCTCTATGATTGCCTCCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCCTCTTCTCCCGGATGATGGCCGGGACACGCCCCAATGCAGCCGTCGCGGTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGTAA

Coding sequence (CDS)

ATGGCAAATATCAAACTTTCACTTCCATTACCTTCACTTTCCAAGGTCTACACTAGTTCCAAGGATAAGGTACCAAGATCTGTATCTTCTTCCCCCTCTATGATTGCCTCCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCCTCTTCTCCCGGATGATGGCCGGGACACGCCCCAATGCAGCCGTCGCGGTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGTAA

Protein sequence

MANIKLSLPLPSLSKVYTSSKDKVPRSVSSSPSMIASGTDIAPSFGVGGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR
Homology
[Close]
BLAST of Lsi05G001260 vs. TrEMBL
Match: A0A0A0L793_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238090 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-12
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 34 MIASGTDIAPSFGV---GGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR 86
          MIASGTDI+ SFGV   GGGLFSR+MA TRPNAAVA TALAGLAVV VLFYSASR
Sbjct: 1  MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASR 55

[Close]
BLAST of Lsi05G001260 vs. NCBI nr
Match: gi|778680382|ref|XP_011651302.1| (PREDICTED: small G protein signaling modulator 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-12
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 34 MIASGTDIAPSFGV---GGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR 86
          MIASGTDI+ SFGV   GGGLFSR+MA TRPNAAVA TALAGLAVV VLFYSASR
Sbjct: 1  MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASR 55

[Close]
BLAST of Lsi05G001260 vs. NCBI nr
Match: gi|659111972|ref|XP_008456003.1| (PREDICTED: TBC1 domain family member 15-like isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-12
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 34 MIASGTDIAPSFGV---GGGLFSRMMAGTRPNAAVAVTALAGLAVVVVLFYSASR 86
          MIASGTDI+ SFGV   GGGLFSR+MA TRPNAAVA TALAGLAVV VLFYSASR
Sbjct: 1  MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASR 55

The following BLAST results are available for this feature:
BLAST of Lsi05G001260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G001260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L793_CUCSA5.4e-1283.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238090 PE=4 SV=1[more]
BLAST of Lsi05G001260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G001260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680382|ref|XP_011651302.1|7.8e-1283.64PREDICTED: small G protein signaling modulator 1 isoform X2 [Cucumis sativus][more]
gi|659111972|ref|XP_008456003.1|7.8e-1283.64PREDICTED: TBC1 domain family member 15-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001260.1Lsi05G001260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G001260Wild cucumber (PI 183967)cpilsiB209
Lsi05G001260Cucumber (Chinese Long) v2culsiB211
Lsi05G001260Melon (DHL92) v3.5.1lsimeB368
Lsi05G001260Watermelon (Charleston Gray)lsiwcgB332
Lsi05G001260Watermelon (97103) v1lsiwmB361
Lsi05G001260Cucumber (Gy14) v2cgyblsiB198
Lsi05G001260Melon (DHL92) v3.6.1lsimedB384
Lsi05G001260Cucumber (Chinese Long) v3cuclsiB230
Lsi05G001260Watermelon (97103) v2lsiwmbB329
Lsi05G001260Wax gourdlsiwgoB431
Lsi05G001260Cucumber (Gy14) v1cgylsiB003