Lsi04G023140.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G023140.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ergosterol biosynthetic protein 28
Location	chr04 : 30355329 .. 30358068 (+)
Sequence length	569

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTCCATTTTGTGAGATCGAGAGACGGGAATTCCTGTAGATCTCGGTGAAATGAAGCTGCTAGGATGGTGGCTGATGCTGGTAGGTTCGCTCCGATTGGCCTCCGTTTGGTTTGGATTCTTCGACATATGGGCCTTGAGGCTCGCCGTCTTCTCAAACACTACCAGTAATCTCCCTCTCTCGAAAATCTCAGTCATTCATTAGTTTAGGTTCTGCAACTCATGTTCAAAATGTGCATTCTCGTTCTATTGCATCCAGATGAATGAATCTAGTACTGTTATCTCTCTGGTACTCCCGTGACTAATTGAATTCCACCGAAATCAAAATTCGTAGTATGTCTTTTATTGCGATGACGATGTGTTATCACGGATTGGAGTTGTTGTCCTCTGTTTTGATCCGTGACCTAAGGCCGAAGACCTTTTGGCTGAACTTTTGTTGTCAGAATTCATTTTTTTTTCTTCTAGGCAATGCTTAACTCTGTATGCATATTTCATATTTTATAAATCAAAGAGGTGTAAAGTCGGAAGAAGGACGAATTTTTTAGGTTCCTTATGATCGCGTTTCTTTCTACATCGATAGTGAAATTCGTAAATTGGAAGCTAATTACCTCTTTGAAGTTTCTTTTCTTGAGCATACTGGCTTGCCTACAAAGTCAATCCACTTAATCAATTCTTAAGCCTGAAAAATGAGTTCAAACAGATACTTCGGTTGTAGTTTTTGAACTCGAAATCATATGGTAATCTAGTCTGCCATTCTGTTGCTCCTTTAGTACACCGAGTATCGAGTTTTCTCCAATTGTGGGATAATGGAATTATCAATTTCCTCTATAATTTCATGCCATGCGTACATCCGTTTTGACTAATTTCATGCGTACATCCGTTTTCACACTAAATGTGATGTATGTATACAGTATCCCCTGATTGGAAATTTGTATATCTTCTCATTTATAAACTTCTATAGTTGTATTACATAGTCGATATTCTTTATAGGAGGAAGTATAGACTATCAAGATGGCAAGATGGCAGATTTTTATTAATTTTTACTTTTATTTTTTTTGCTTGGGAAAATTGTGTTAAAAGGAAAAGCTAGCATGGTTAGGAATAAGGATATATCCTGGTGCTAAAGTTTTATTCGTCTGCCATATGAACTTGAAGGTGGATGGAGTAGTGTGTTAATTTGTTTTGATAACCATGCCATAATCAAATGACACCATGGCTCCTAGTCTGACGCAACATACAATATGCTCATTACCAGAATTTTATCGAACTAGATATTAGTGAAATGTTTTCCCCTTTCTGTAAGTTTCTCCATTTTTCCAATTTTGTTTGGCTATTTTATCCTGTTTTAAATTTTAATCAATGAATGTGTTAGTTTTTGTACAAATATTATGTTTCATTGTTATGGAGATGTAAAATTATTACTGATTAAGAAACTTTACCTATGACATTATGATTGGTTTCTTCATTCATTTATTTTGTTTTAAATATTTTTCACTGTGAACTCAAACTTTACTTTGATCAATGAAGTTTAAAATATAGATTATTAGTTTTAAAATTGGAAATTATAATTTGTGGTTTACATATAAGATCTCAGAATTTAATGTCATGTTAATTTATTAATAACACTAGAAGCTTAGACTATTATGTTAGATAAAAATTGTTTATTTAAAGTGTTTCTTAATCTTCTCTTTATGTATGGACTCAAAACATTTGTGATAATTATTTTTAGTTCTAGAAGCATAGACTTTATGTTGGAGAAAATTTCTTCTATCTTCTTCACATATGCGTGGGCTTAAATTTCACGCTGATTAATAAATTTAACATGTGGGATGGTATTATAGTAAATAGGAAAATAACTATGTATGGATTTCAATGTGAGGTCCCCTATTATAATGTTTAAATTATTTTTAAATTCTAATTTATTTTTCAAGTTAAGGTTAATGTAACTATGTAAATTATTCCTGGTGCCTATTCATGTCAATATCTTATGGCATGCTTAATCCTGAATATTCTTCTCTCTTGCTGTCTTTTGTGATAGTGACTGAAGTTCATGGAAGGACATTCGGAGTGTGGACTCTCTTAACTTGCACCCTTTGCATTCTCTGTGCACTCAACCTTGAGAATAGGCCCATTTATTTGGCGACATTTTTGTCGTTCATCTATGCTTTGGGGCATTTCTTAACCGAATACTTGATATATCATACCATGTCCATTGCAAATTTGACAACTGTTGGCATCTTTGCGGGTATGATCGCTAGAATTAAATCCATCACATCATATGTTGAGTTGGATTTGAACTTTTCTCACACCTTTTGCTCTGGTATTTTTAAATCTTGAACTAAAACAAAAAGTTTATCACAAGAATTTATCTGGCTGAGCCTATATATACTACTATCAGATCTAATGTGTAACTACTGTAAAGCTGAGTACTCTTTCTCATGACACGATAATAAATTAATTGGCCATTTCAGTCGATCGAAGACTGATTATGTATTGTTCCCATTCATAGTATTGCTTATATTCTGAAACATGATATTTGTTACTCAACAAGAGAAGAAATAATGCATGTTGTTTAGCCTTTTGTTTCTGCCGTCAAACTTTGATTAGACATAAAGATAATTTATTGATGTTAAACTTTTTGTTAACAGGTACATCAATAATTTGGATGCTGCTCCAGTGGAATGCACACCAAAAAATTCACCCCAAACATTCTTGATACGAGTAGATGCACAAATTTGA

mRNA sequence

CTTTTTCCATTTTGTGAGATCGAGAGACGGGAATTCCTGTAGATCTCGGTGAAATGAAGCTGCTAGGATGGTGGCTGATGCTGGTAGGTTCGCTCCGATTGGCCTCCGTTTGGTTTGGATTCTTCGACATATGGGCCTTGAGGCTCGCCGTCTTCTCAAACACTACCATGACTGAAGTTCATGGAAGGACATTCGGAGTGTGGACTCTCTTAACTTGCACCCTTTGCATTCTCTGTGCACTCAACCTTGAGAATAGGCCCATTTATTTGGCGACATTTTTGTCGTTCATCTATGCTTTGGGGCATTTCTTAACCGAATACTTGATATATCATACCATGTCCATTGCAAATTTGACAACTGTTGGCATCTTTGCGGGTATGATCGCTAGAATTAAATCCATCACATCATATGTTGAGTTGGATTTGAACTTTTCTCACACCTTTTGCTCTGATCTAATGTGTAACTACTGTAAAGCTGAGTACATCAATAATTTGGATGCTGCTCCAGTGGAATGCACACCAAAAAATTCACCCCAAACATTCTTGATACGAGTAGATGCACAAATTTGA

Coding sequence (CDS)

ATGAAGCTGCTAGGATGGTGGCTGATGCTGGTAGGTTCGCTCCGATTGGCCTCCGTTTGGTTTGGATTCTTCGACATATGGGCCTTGAGGCTCGCCGTCTTCTCAAACACTACCATGACTGAAGTTCATGGAAGGACATTCGGAGTGTGGACTCTCTTAACTTGCACCCTTTGCATTCTCTGTGCACTCAACCTTGAGAATAGGCCCATTTATTTGGCGACATTTTTGTCGTTCATCTATGCTTTGGGGCATTTCTTAACCGAATACTTGATATATCATACCATGTCCATTGCAAATTTGACAACTGTTGGCATCTTTGCGGGTATGATCGCTAGAATTAAATCCATCACATCATATGTTGAGTTGGATTTGAACTTTTCTCACACCTTTTGCTCTGATCTAATGTGTAACTACTGTAAAGCTGAGTACATCAATAATTTGGATGCTGCTCCAGTGGAATGCACACCAAAAAATTCACCCCAAACATTCTTGATACGAGTAGATGCACAAATTTGA

Protein sequence

MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCILCALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAGMIARIKSITSYVELDLNFSHTFCSDLMCNYCKAEYINNLDAAPVECTPKNSPQTFLIRVDAQI

Homology

[Close]

BLAST of Lsi04G023140.1 vs. Swiss-Prot
Match: ERG28_ARATH (Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-48
Identity = 93/108 (86.11%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK LG+WLM+VGSLRLASVWFGFF+IWALRLAVFS TTM+EVHGRTFGVWTLLTCTLC L
Sbjct: 1   MKALGYWLMVVGSLRLASVWFGFFNIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLEN+P+YLATFLSFIYALGHFLTEYL Y TM+IANL+TVG FAG
Sbjct: 61  CAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. Swiss-Prot
Match: ERG28_HUMAN (Probable ergosterol biosynthetic protein 28 OS=Homo sapiens GN=C14orf1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGVWTLLTCTLC 60
           + +L  WL++V  + + +    F D   L   +++     +  +  RTFG+WTLL+  + 
Sbjct: 5   LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIR 64

Query: 61  ILCALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAGMIARIKSI 117
            LCA+++ N+ +Y  T  +F+ ALGHFL+E  +Y T +     T+G+ A ++    SI
Sbjct: 65  CLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLAPLMVASFSI 118

[Close]

BLAST of Lsi04G023140.1 vs. Swiss-Prot
Match: ERG28_PONAB (Probable ergosterol biosynthetic protein 28 OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGVWTLLTCTLC 60
           + +L  WL++V  + + +    F D   L   +++     +  +  RTFG+WTLL+  + 
Sbjct: 5   LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIR 64

Query: 61  ILCALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAGMIARIKSI 117
            LCA+++ N+ +Y  T  +F+ ALGHFL+E  +Y T +     T+G+ A ++    SI
Sbjct: 65  CLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLAPLMVASFSI 118

[Close]

BLAST of Lsi04G023140.1 vs. Swiss-Prot
Match: ERG28_MOUSE (Probable ergosterol biosynthetic protein 28 OS=Mus musculus GN=ORF11 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-07
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSN--TTMTEVHGRTFGVWTLLTCTLC 60
           + +L  WL++V  + + +    F D   L   +++     +  +  RTFG+WTLL+  + 
Sbjct: 5   LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIR 64

Query: 61  ILCALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAGMIARIKSI 117
            LCA+++ N+ +Y  T  +F+ ALGHFL+E  ++ T +     TVG+ A ++    SI
Sbjct: 65  CLCAIDIHNKTLYHITLWTFLLALGHFLSELFVFGTAA----PTVGVLAPLMVASFSI 118

[Close]

BLAST of Lsi04G023140.1 vs. TrEMBL
Match: A0A0A0LGZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G894520 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-50
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK+LGWWLMLVGSLRLASVWFGFFDIWALRLAVFSN TMTEVHGRTF  WTLLTCTLCIL
Sbjct: 1   MKVLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNATMTEVHGRTFIGWTLLTCTLCIL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLEN+PIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG
Sbjct: 61  CAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. TrEMBL
Match: A0A068TYI0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034463001 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-49
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MKLLGWWLMLVGSLRLASVWFGF DIWALRLAVFS TTMTEVHGRTFG+WTLLTCTLCIL
Sbjct: 1   MKLLGWWLMLVGSLRLASVWFGFVDIWALRLAVFSQTTMTEVHGRTFGIWTLLTCTLCIL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NL+N+P+YLATFLSFIYA GHFLTEYLIYHTM+I NLTTVGIFAG
Sbjct: 61  CAFNLDNKPLYLATFLSFIYAFGHFLTEYLIYHTMAIGNLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. TrEMBL
Match: V4T1C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002836mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.6e-49
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK LGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFG+WTLLTCTLC L
Sbjct: 1   MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWTLLTCTLCFL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLENRP+Y ATFLSFIYA GHFLTEYLIY TM+I NLTTVGIFAG
Sbjct: 61  CAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. TrEMBL
Match: A0A067H1C1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032986mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.6e-49
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK LGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFG+WTLLTCTLC L
Sbjct: 1   MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWTLLTCTLCFL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLENRP+Y ATFLSFIYA GHFLTEYLIY TM+I NLTTVGIFAG
Sbjct: 61  CAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. TrEMBL
Match: A0A022R826_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015958mg PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.6e-49
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           M+LLGWWLMLVG+LRLASVWFGFFDIWALRLAVFS TTM+EVHGRTFGVWTLLTCTLC L
Sbjct: 11  MELLGWWLMLVGTLRLASVWFGFFDIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFL 70

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CALNLEN+P+YLATFLSFIYALGHFLTEYLIYHTM+I NL TVG FAG
Sbjct: 71  CALNLENKPLYLATFLSFIYALGHFLTEYLIYHTMTIGNLATVGFFAG 118

[Close]

BLAST of Lsi04G023140.1 vs. TAIR10
Match: AT1G10030.1 (AT1G10030.1 homolog of yeast ergosterol28)

HSP 1 Score: 191.4 bits (485), Expect = 4.5e-49
Identity = 93/108 (86.11%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK LG+WLM+VGSLRLASVWFGFF+IWALRLAVFS TTM+EVHGRTFGVWTLLTCTLC L
Sbjct: 1   MKALGYWLMVVGSLRLASVWFGFFNIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLEN+P+YLATFLSFIYALGHFLTEYL Y TM+IANL+TVG FAG
Sbjct: 61  CAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. NCBI nr
Match: gi|659132238|ref|XP_008466094.1| (PREDICTED: ergosterol biosynthetic protein 28 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL
Sbjct: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLEN+PIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG
Sbjct: 61  CAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. NCBI nr
Match: gi|449436908|ref|XP_004136234.1| (PREDICTED: ergosterol biosynthetic protein 28 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 8.5e-50
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK+LGWWLMLVGSLRLASVWFGFFDIWALRLAVFSN TMTEVHGRTF  WTLLTCTLCIL
Sbjct: 1   MKVLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNATMTEVHGRTFIGWTLLTCTLCIL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLEN+PIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG
Sbjct: 61  CAFNLENKPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. NCBI nr
Match: gi|747056120|ref|XP_011074315.1| (PREDICTED: ergosterol biosynthetic protein 28 [Sesamum indicum])

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MKLLGWWLMLVG+LRLASVWFGFFDIWALRLAVFS TTMTEVHGRTFGVWTLLTCTLC L
Sbjct: 1   MKLLGWWLMLVGTLRLASVWFGFFDIWALRLAVFSQTTMTEVHGRTFGVWTLLTCTLCFL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NL+N+P+YLATFLSFIYA GHFLTEYLIYHTM+I NLTTVGIFAG
Sbjct: 61  CAFNLDNKPLYLATFLSFIYAFGHFLTEYLIYHTMAIGNLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. NCBI nr
Match: gi|661895179|emb|CDP00984.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 203.4 bits (516), Expect = 3.2e-49
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MKLLGWWLMLVGSLRLASVWFGF DIWALRLAVFS TTMTEVHGRTFG+WTLLTCTLCIL
Sbjct: 1   MKLLGWWLMLVGSLRLASVWFGFVDIWALRLAVFSQTTMTEVHGRTFGIWTLLTCTLCIL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NL+N+P+YLATFLSFIYA GHFLTEYLIYHTM+I NLTTVGIFAG
Sbjct: 61  CAFNLDNKPLYLATFLSFIYAFGHFLTEYLIYHTMAIGNLTTVGIFAG 108

[Close]

BLAST of Lsi04G023140.1 vs. NCBI nr
Match: gi|567882277|ref|XP_006433697.1| (hypothetical protein CICLE_v10002836mg [Citrus clementina])

HSP 1 Score: 201.8 bits (512), Expect = 9.4e-49
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 1   MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGVWTLLTCTLCIL 60
           MK LGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFG+WTLLTCTLC L
Sbjct: 1   MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWTLLTCTLCFL 60

Query: 61  CALNLENRPIYLATFLSFIYALGHFLTEYLIYHTMSIANLTTVGIFAG 109
           CA NLENRP+Y ATFLSFIYA GHFLTEYLIY TM+I NLTTVGIFAG
Sbjct: 61  CAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAG 108

The following BLAST results are available for this feature:

BLAST of Lsi04G023140.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERG28_ARATH	8.0e-48	86.11	Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=...	[more]
ERG28_HUMAN	1.4e-07	30.51	Probable ergosterol biosynthetic protein 28 OS=Homo sapiens GN=C14orf1 PE=1 SV=1	[more]
ERG28_PONAB	1.4e-07	30.51	Probable ergosterol biosynthetic protein 28 OS=Pongo abelii PE=2 SV=1	[more]
ERG28_MOUSE	3.1e-07	30.51	Probable ergosterol biosynthetic protein 28 OS=Mus musculus GN=ORF11 PE=2 SV=1	[more]

BLAST of Lsi04G023140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGZ9_CUCSA	5.9e-50	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G894520 PE=4 SV=1	[more]
A0A068TYI0_COFCA	2.3e-49	90.74	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034463001 PE=4 SV=1	[more]
V4T1C7_9ROSI	6.6e-49	90.74	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002836mg PE=4 SV=1	[more]
A0A067H1C1_CITSI	6.6e-49	90.74	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032986mg PE=4 SV=1	[more]
A0A022R826_ERYGU	8.6e-49	89.81	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015958mg PE=4 SV=1	[more]

BLAST of Lsi04G023140.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10030.1	4.5e-49	86.11	homolog of yeast ergosterol28	[more]

BLAST of Lsi04G023140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132238\|ref\|XP_008466094.1\|	1.1e-52	98.15	PREDICTED: ergosterol biosynthetic protein 28 [Cucumis melo]	[more]
gi\|449436908\|ref\|XP_004136234.1\|	8.5e-50	94.44	PREDICTED: ergosterol biosynthetic protein 28 [Cucumis sativus]	[more]
gi\|747056120\|ref\|XP_011074315.1\|	2.5e-49	90.74	PREDICTED: ergosterol biosynthetic protein 28 [Sesamum indicum]	[more]
gi\|661895179\|emb\|CDP00984.1\|	3.2e-49	90.74	unnamed protein product [Coffea canephora]	[more]
gi\|567882277\|ref\|XP_006433697.1\|	9.4e-49	90.74	hypothetical protein CICLE_v10002836mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR005352	Erg28

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G023140	Lsi04G023140	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G023140.1.five_prime_UTR.1	Lsi04G023140.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G023140.1.CDS.1	Lsi04G023140.1.CDS.1	CDS
Lsi04G023140.1.CDS.2	Lsi04G023140.1.CDS.2	CDS
Lsi04G023140.1.CDS.3	Lsi04G023140.1.CDS.3	CDS
Lsi04G023140.1.CDS.4	Lsi04G023140.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G023140.1	Lsi04G023140.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005352	Erg28	PFAM	PF03694	Erg28	coord: 3..100 score: 4.0
None	No IPR available	PANTHER	PTHR15451	FAMILY NOT NAMED	coord: 1..109 score: 3.2