Lsi04G023080.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G023080.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBnaC05g27570D protein
Locationchr04 : 30267770 .. 30270099 (-)
Sequence length894
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGTAGCTAATGTTAAGATTTTAGAGACTAATCTTATTAACATCCAAAGATAATTCCTTTTTAAGAGTCCCACCATCTTTGGTAATGACAATCCCAAGCAAGCGACAAGGTTGGGCTTCTTCAAGCATTTGAACAACACTTCTCATTGTGGGTCTCAAAGTGGGAAGCCTGGCTGTGCACAATATTGCAATTCTTAATACCTTTATTGCATCTTCTTTAAATGCATCTGGAATTCTTGAATCTACTAAGCTTAATACACTTTCTCTTGTTTTCAAATTCTTCGATACCCATTGAACAATCTCCTTGTTCTCTCCAAACTCTGCATCTATTGCTTTTTTTCCACTCACTAACTCCATCAATACCACTCCAAAACTATACACATCGCTCTTTTCGTCGACTTTGTAAGTGTATCCATACTCTGCATAACATTAATTCAACGTTAAAAACACACATCCACCTTTATGCATATTAAATCGAATAACAACAATGACAATAATTTAAAGTATGTTTATTGACTTTTTGAATAATTTTAGATGATAAAAATGTTTTTTCAATCTTAATAAACAATGTTAAATCACCGATCAATCCAAAAGGTTCACTTGATGGATAGGGTTGTGGATGTTTGATTATTATAGTGGTTCAAACGTGTAAGACGTCATCTTCTCTAATTAACCCAGAAACTTTAATGAATAGGTTATAGTAAATTTAAATTATATAAATATTTCAACAAATAACAAATAAAAAATACACTTTGGTCTTGTATCATACACGCCTCAAATGATTTATAGTATGTTTGGAAGTGATTTCAAAAGGATTAAAATCATTTTTTACATTTTTTATTAAAAGAACAAAAAATTTAGTGCAGTCTAGGCCGCTATTACATAGCCCAGTCAAACCAGATAAAAAATTGTCATAGGGCTTCCCTTTTTATAATCATTATGAAAGATAATTTTAATTGTTCAAACCCAATTTTACTTAATTTTCAAGTGATTAAAGAAGTGATTTTGAATATTATAAAAGTGATTTTAACAATTTCAAAATTAGTATTAAATATTTATTTAAAATTGATTTTTTTTCAATCAATTTTTTCTCTCGTTCATCTTTACATATTATTAAGTTGATAGATTATAGTAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGTCTGTCCCATAAGCTTCCATTTGGCATGTATTCGTACACCAACAGGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTAAGTCTTCTTCCTCCCCTCGTACGGATCGGTGTTCCAAATGTGCTTCACGGCGAACTCTTTTCCGTTTCCGACGGTCACTTTGTAAACGTTGCCGGAACCTCCTTTTCCGATTAGATTCTCGTCTTTAATGGAATCGAGGATTTCGTCCTCTGTGAACGTCATTACGTGGAATGATTTTAGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTGTAAGCTCCGTTTGAGAGCGCTTGAGGTACTGGACCGGTTAATTGATTGTTGGAAAGATCGAGAAAACTCAATTTCAGATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

mRNA sequence

ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

Coding sequence (CDS)

ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

Protein sequence

MIINLIGNKFTWCDVARSACNDMAGLVEPSCVKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAVMKILQSLRRSDGNFVSCFPIQLHFSRRVKLETSLVMLQYSFTTFTWRIELRVFTSESNSDDFVLCFTRIGDELRSHDSSLSDQSLSFPLFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGSSSEN
Homology
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BLAST of Lsi04G023080.1 vs. TrEMBL
Match: A0A0E0I156_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 41/137 (29.93%), Postives = 60/137 (43.80%), Query Frame = 1 

Query: 157 LFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCE 216
           +  +VM  H+      +P ++ + S+  S D   L     I   ++L      A+ +   
Sbjct: 468 MLTRVMFRHSNMPSGTSPASELLYSMSCSSDR-SLPNVAGISPESALSARSRTARFTQSP 527

Query: 217 NVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFP 276
           +  GI PD S   R++   +   P D G  P  +F  + TI K  H PIVSGI PE  F 
Sbjct: 528 SSGGIRPDSSFCRRWRNASSESFPMDAGKLPLNRFPKKSTICKLEHSPIVSGISPEKSFS 587

Query: 277 CNSKLSRFFKSPIVVGS 294
                SRF + P   GS
Sbjct: 588 YRKSTSRFTRRPTASGS 603

The following BLAST results are available for this feature:
BLAST of Lsi04G023080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G023080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0I156_ORYNI4.1e-0629.93Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
BLAST of Lsi04G023080.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G023080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi04G023080Lsi04G023080gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G023080.1.CDS.5Lsi04G023080.1.CDS.5CDS
Lsi04G023080.1.CDS.4Lsi04G023080.1.CDS.4CDS
Lsi04G023080.1.CDS.3Lsi04G023080.1.CDS.3CDS
Lsi04G023080.1.CDS.2Lsi04G023080.1.CDS.2CDS
Lsi04G023080.1.CDS.1Lsi04G023080.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi04G023080.1Lsi04G023080.1-proteinpolypeptide