Lsi04G023080 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G023080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBnaC05g27570D protein
Locationchr04 : 30267770 .. 30270099 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGTAGCTAATGTTAAGATTTTAGAGACTAATCTTATTAACATCCAAAGATAATTCCTTTTTAAGAGTCCCACCATCTTTGGTAATGACAATCCCAAGCAAGCGACAAGGTTGGGCTTCTTCAAGCATTTGAACAACACTTCTCATTGTGGGTCTCAAAGTGGGAAGCCTGGCTGTGCACAATATTGCAATTCTTAATACCTTTATTGCATCTTCTTTAAATGCATCTGGAATTCTTGAATCTACTAAGCTTAATACACTTTCTCTTGTTTTCAAATTCTTCGATACCCATTGAACAATCTCCTTGTTCTCTCCAAACTCTGCATCTATTGCTTTTTTTCCACTCACTAACTCCATCAATACCACTCCAAAACTATACACATCGCTCTTTTCGTCGACTTTGTAAGTGTATCCATACTCTGCATAACATTAATTCAACGTTAAAAACACACATCCACCTTTATGCATATTAAATCGAATAACAACAATGACAATAATTTAAAGTATGTTTATTGACTTTTTGAATAATTTTAGATGATAAAAATGTTTTTTCAATCTTAATAAACAATGTTAAATCACCGATCAATCCAAAAGGTTCACTTGATGGATAGGGTTGTGGATGTTTGATTATTATAGTGGTTCAAACGTGTAAGACGTCATCTTCTCTAATTAACCCAGAAACTTTAATGAATAGGTTATAGTAAATTTAAATTATATAAATATTTCAACAAATAACAAATAAAAAATACACTTTGGTCTTGTATCATACACGCCTCAAATGATTTATAGTATGTTTGGAAGTGATTTCAAAAGGATTAAAATCATTTTTTACATTTTTTATTAAAAGAACAAAAAATTTAGTGCAGTCTAGGCCGCTATTACATAGCCCAGTCAAACCAGATAAAAAATTGTCATAGGGCTTCCCTTTTTATAATCATTATGAAAGATAATTTTAATTGTTCAAACCCAATTTTACTTAATTTTCAAGTGATTAAAGAAGTGATTTTGAATATTATAAAAGTGATTTTAACAATTTCAAAATTAGTATTAAATATTTATTTAAAATTGATTTTTTTTCAATCAATTTTTTCTCTCGTTCATCTTTACATATTATTAAGTTGATAGATTATAGTAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGTCTGTCCCATAAGCTTCCATTTGGCATGTATTCGTACACCAACAGGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTAAGTCTTCTTCCTCCCCTCGTACGGATCGGTGTTCCAAATGTGCTTCACGGCGAACTCTTTTCCGTTTCCGACGGTCACTTTGTAAACGTTGCCGGAACCTCCTTTTCCGATTAGATTCTCGTCTTTAATGGAATCGAGGATTTCGTCCTCTGTGAACGTCATTACGTGGAATGATTTTAGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTGTAAGCTCCGTTTGAGAGCGCTTGAGGTACTGGACCGGTTAATTGATTGTTGGAAAGATCGAGAAAACTCAATTTCAGATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

mRNA sequence

ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

Coding sequence (CDS)

ATGATTATAAATTTAATTGGTAACAAGTTTACCTGGTGCGATGTAGCCCGGAGTGCCTGCAATGACATGGCTGGTCTCGTTGAACCCAGTTGTGTGAAGAATTTTGGCAAGACCAAAATCCGCGATTCTGGGCTTCAGAAATTCATCCAAAAGTATGTTACTCGACTTAACATCCCGGTGGATCACCGGCCGATCACAGCCGTGATGAAGATACTCCAATCCCTTCGCCGCTCCGACGGCAATTTCGTATCTTGTTTCCCAATCCAACTCCATTTTTCTCGACGTGTGAAGCTCGAAACCTCGCTCGTGATGCTGCAATACAGCTTCACCACGTTCACATGGCGGATCGAGCTCAGAGTCTTCACCTCCGAGTCAAATTCCGACGACTTCGTTCTCTGTTTCACCAGAATCGGCGATGAACTCCGGTCCCACGATTCCTCTTTAAGCGACCAATCTCTATCTTTTCCGCTCTTTCTCAAGGTTATGAAGCACCACAACGTCACGCTGAGAAGAATTAATCCGATGGCGAAACAGATGACAAGTGTTTTGACGTCCTTCGACGCGCCAGAACTCTGTGAACATCGCCGTATAAAGTCATCGGCCTCACTGCAGAGGCCAGGGTTTCCGGCAAAGCTTTCTTTATGCGAAAATGTCGAGGGGATTTCACCTGATAGGTCGTTATTGGAGAGATTCAAAGAGTTTAGAACTGGAAGAAAGCCCAGCGACGAAGGTATCTGTCCAGAGAAGAAATTCTCCGCCAGATTGACGATACTCAAAGAATTACACAAGCCGATCGTCTCTGGAATCGAACCGGAAAATTTATTCCCCTGCAATTCGAAGCTATCGAGATTCTTCAAGTCACCAATAGTCGTCGGAAGTTCATCAGAGAATTGA

Protein sequence

MIINLIGNKFTWCDVARSACNDMAGLVEPSCVKNFGKTKIRDSGLQKFIQKYVTRLNIPVDHRPITAVMKILQSLRRSDGNFVSCFPIQLHFSRRVKLETSLVMLQYSFTTFTWRIELRVFTSESNSDDFVLCFTRIGDELRSHDSSLSDQSLSFPLFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCENVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFPCNSKLSRFFKSPIVVGSSSEN
Homology
[Close]
BLAST of Lsi04G023080 vs. TrEMBL
Match: A0A0E0I156_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 41/137 (29.93%), Postives = 60/137 (43.80%), Query Frame = 1 

Query: 157 LFLKVMKHHNVTLRRINPMAKQMTSVLTSFDAPELCEHRRIKSSASLQRPGFPAKLSLCE 216
           +  +VM  H+      +P ++ + S+  S D   L     I   ++L      A+ +   
Sbjct: 468 MLTRVMFRHSNMPSGTSPASELLYSMSCSSDR-SLPNVAGISPESALSARSRTARFTQSP 527

Query: 217 NVEGISPDRSLLERFKEFRTGRKPSDEGICPEKKFSARLTILKELHKPIVSGIEPENLFP 276
           +  GI PD S   R++   +   P D G  P  +F  + TI K  H PIVSGI PE  F 
Sbjct: 528 SSGGIRPDSSFCRRWRNASSESFPMDAGKLPLNRFPKKSTICKLEHSPIVSGISPEKSFS 587

Query: 277 CNSKLSRFFKSPIVVGS 294
                SRF + P   GS
Sbjct: 588 YRKSTSRFTRRPTASGS 603

The following BLAST results are available for this feature:
BLAST of Lsi04G023080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G023080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0I156_ORYNI4.1e-0629.93Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
BLAST of Lsi04G023080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G023080 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G023080.1Lsi04G023080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G023080Bottle gourd (USVL1VR-Ls)lsilsiB075
Lsi04G023080Bottle gourd (USVL1VR-Ls)lsilsiB147
Lsi04G023080Cucumber (Gy14) v1cgylsiB263
Lsi04G023080Cucumber (Gy14) v1cgylsiB503
Lsi04G023080Cucurbita maxima (Rimu)cmalsiB022
Lsi04G023080Cucurbita maxima (Rimu)cmalsiB169
Lsi04G023080Cucurbita maxima (Rimu)cmalsiB431
Lsi04G023080Cucurbita maxima (Rimu)cmalsiB728
Lsi04G023080Cucurbita moschata (Rifu)cmolsiB010
Lsi04G023080Cucurbita moschata (Rifu)cmolsiB159
Lsi04G023080Cucurbita moschata (Rifu)cmolsiB420
Lsi04G023080Cucurbita moschata (Rifu)cmolsiB718
Lsi04G023080Cucurbita pepo (Zucchini)cpelsiB088
Lsi04G023080Cucurbita pepo (Zucchini)cpelsiB455
Lsi04G023080Cucurbita pepo (Zucchini)cpelsiB636
Lsi04G023080Cucurbita pepo (Zucchini)cpelsiB671
Lsi04G023080Wild cucumber (PI 183967)cpilsiB189
Lsi04G023080Wild cucumber (PI 183967)cpilsiB118
Lsi04G023080Cucumber (Chinese Long) v2culsiB121
Lsi04G023080Cucumber (Chinese Long) v2culsiB191
Lsi04G023080Melon (DHL92) v3.5.1lsimeB306
Lsi04G023080Melon (DHL92) v3.5.1lsimeB310
Lsi04G023080Watermelon (Charleston Gray)lsiwcgB260
Lsi04G023080Watermelon (Charleston Gray)lsiwcgB303
Lsi04G023080Watermelon (97103) v1lsiwmB291
Lsi04G023080Watermelon (97103) v1lsiwmB334
Lsi04G023080Cucumber (Gy14) v2cgyblsiB108
Lsi04G023080Cucumber (Gy14) v2cgyblsiB175
Lsi04G023080Melon (DHL92) v3.6.1lsimedB320
Lsi04G023080Melon (DHL92) v3.6.1lsimedB324
Lsi04G023080Melon (DHL92) v3.6.1lsimedB350
Lsi04G023080Silver-seed gourdcarlsiB054
Lsi04G023080Silver-seed gourdcarlsiB366
Lsi04G023080Silver-seed gourdcarlsiB575
Lsi04G023080Silver-seed gourdcarlsiB609
Lsi04G023080Silver-seed gourdcarlsiB750
Lsi04G023080Cucumber (Chinese Long) v3cuclsiB133
Lsi04G023080Cucumber (Chinese Long) v3cuclsiB208
Lsi04G023080Cucumber (Chinese Long) v3cuclsiB485
Lsi04G023080Watermelon (97103) v2lsiwmbB259
Lsi04G023080Watermelon (97103) v2lsiwmbB267
Lsi04G023080Watermelon (97103) v2lsiwmbB303
Lsi04G023080Wax gourdlsiwgoB369
Lsi04G023080Wax gourdlsiwgoB393