Lsi04G017870.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G017870.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 25075901 .. 25076924 (-)
Sequence length246
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCAGAGAGAAGAGTTCATTGCTGCTGCATTTGAAGCCTCAACAAATCTATTTTACAATCCTGCATTAAGAGAATCTCAAAAGGCAGTTAGAGAACAAAAGAATGAGTTGCTTCGTATAATAAAGTAACACTCATTTTGCTGCAATCACCCGTGTGTTGCCGGTAGCTAATTTTCAGTCACATGAATGACAGACTTTTTTTTTTTTGACTGCTGCCTGGACAGTAGTTTGAATGTGTTGTTTCTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCATAATTTCCAATAGGCATATAGAAAGTGCTAGTGCTGCAGCTAGTAGATGAATTATGAATATTTACTTGTCAAATCTATAAAGCAAAGTAGCTAGCTGTGATTAATTAGTACCTCTTGACAATAAATTAATCAGCCTATCCAATAATAATCAAGTGGCAGGTAAAACAAAGTTGTCCAAGTTTGATGACTGGGACAAGGTAGTGTCCACACGGGACGGTTATATAAAGATTAGGAAAATACTTGAGTGCGGTTAG

mRNA sequence

ATGGTTAGAGAAGAGTTCATTGCTGCTGCATTTGAAGCCTCAACAAATCTATTTTACAATCCTGCATTAAGAGAATCTCAAAAGGCAGTTAGAGAACAAAAGAATGAGTTGCTTCGTATAATAAACCTATCCAATAATAATCAAGTGGCAGGTAAAACAAAGTTGTCCAAGTTTGATGACTGGGACAAGGTAGTGTCCACACGGGACGGTTATATAAAGATTAGGAAAATACTTGAGTGCGGTTAG

Coding sequence (CDS)

ATGGTTAGAGAAGAGTTCATTGCTGCTGCATTTGAAGCCTCAACAAATCTATTTTACAATCCTGCATTAAGAGAATCTCAAAAGGCAGTTAGAGAACAAAAGAATGAGTTGCTTCGTATAATAAACCTATCCAATAATAATCAAGTGGCAGGTAAAACAAAGTTGTCCAAGTTTGATGACTGGGACAAGGTAGTGTCCACACGGGACGGTTATATAAAGATTAGGAAAATACTTGAGTGCGGTTAG

Protein sequence

MVREEFIAAAFEASTNLFYNPALRESQKAVREQKNELLRIINLSNNNQVAGKTKLSKFDDWDKVVSTRDGYIKIRKILECG
Homology
[Close]
BLAST of Lsi04G017870.1 vs. TrEMBL
Match: A0A0A0L4F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652890 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 2   VRE-EFIAAA--FEASTNLFYNPALRESQKAVREQKNELLRIINLSNNNQVAGKTKLSKF 61
           VRE EFIA    +    NL YNPA RES+KAVREQKNE L I    +NNQV GKTKLS+F
Sbjct: 77  VREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECLPI----SNNQVTGKTKLSEF 136

Query: 62  DDWDKVVSTRD 70
           +DWDKVVST+D
Sbjct: 137 EDWDKVVSTQD 143

[Close]
BLAST of Lsi04G017870.1 vs. NCBI nr
Match: gi|700200319|gb|KGN55477.1| (hypothetical protein Csa_4G652890 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 2   VRE-EFIAAA--FEASTNLFYNPALRESQKAVREQKNELLRIINLSNNNQVAGKTKLSKF 61
           VRE EFIA    +    NL YNPA RES+KAVREQKNE L I    +NNQV GKTKLS+F
Sbjct: 77  VREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECLPI----SNNQVTGKTKLSEF 136

Query: 62  DDWDKVVSTRD 70
           +DWDKVVST+D
Sbjct: 137 EDWDKVVSTQD 143

The following BLAST results are available for this feature:
BLAST of Lsi04G017870.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G017870.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4F8_CUCSA8.0e-1366.20Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652890 PE=4 SV=1[more]
BLAST of Lsi04G017870.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G017870.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200319|gb|KGN55477.1|1.1e-1266.20hypothetical protein Csa_4G652890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi04G017870Lsi04G017870gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G017870.1.CDS.3Lsi04G017870.1.CDS.3CDS
Lsi04G017870.1.CDS.2Lsi04G017870.1.CDS.2CDS
Lsi04G017870.1.CDS.1Lsi04G017870.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi04G017870.1Lsi04G017870.1-proteinpolypeptide