Lsi04G017870 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G017870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 25075901 .. 25076924 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTCAGAGAGAAGAGTTCATTGCTGCTGCATTTGAAGCCTCAACAAATCTATTTTACAATCCTGCATTAAGAGAATCTCAAAAGGCAGTTAGAGAACAAAAGAATGAGTTGCTTCGTATAATAAAGTAACACTCATTTTGCTGCAATCACCCGTGTGTTGCCGGTAGCTAATTTTCAGTCACATGAATGACAGACTTTTTTTTTTTTGACTGCTGCCTGGACAGTAGTTTGAATGTGTTGTTTCTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCATAATTTCCAATAGGCATATAGAAAGTGCTAGTGCTGCAGCTAGTAGATGAATTATGAATATTTACTTGTCAAATCTATAAAGCAAAGTAGCTAGCTGTGATTAATTAGTACCTCTTGACAATAAATTAATCAGCCTATCCAATAATAATCAAGTGGCAGGTAAAACAAAGTTGTCCAAGTTTGATGACTGGGACAAGGTAGTGTCCACACGGGACGGTTATATAAAGATTAGGAAAATACTTGAGTGCGGTTAG

mRNA sequence

ATGGTTAGAGAAGAGTTCATTGCTGCTGCATTTGAAGCCTCAACAAATCTATTTTACAATCCTGCATTAAGAGAATCTCAAAAGGCAGTTAGAGAACAAAAGAATGAGTTGCTTCGTATAATAAACCTATCCAATAATAATCAAGTGGCAGGTAAAACAAAGTTGTCCAAGTTTGATGACTGGGACAAGGTAGTGTCCACACGGGACGGTTATATAAAGATTAGGAAAATACTTGAGTGCGGTTAG

Coding sequence (CDS)

ATGGTTAGAGAAGAGTTCATTGCTGCTGCATTTGAAGCCTCAACAAATCTATTTTACAATCCTGCATTAAGAGAATCTCAAAAGGCAGTTAGAGAACAAAAGAATGAGTTGCTTCGTATAATAAACCTATCCAATAATAATCAAGTGGCAGGTAAAACAAAGTTGTCCAAGTTTGATGACTGGGACAAGGTAGTGTCCACACGGGACGGTTATATAAAGATTAGGAAAATACTTGAGTGCGGTTAG

Protein sequence

MVREEFIAAAFEASTNLFYNPALRESQKAVREQKNELLRIINLSNNNQVAGKTKLSKFDDWDKVVSTRDGYIKIRKILECG

Homology

[Close]

BLAST of Lsi04G017870 vs. TrEMBL
Match: A0A0A0L4F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652890 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-13
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 2   VRE-EFIAAA--FEASTNLFYNPALRESQKAVREQKNELLRIINLSNNNQVAGKTKLSKF 61
           VRE EFIA    +    NL YNPA RES+KAVREQKNE L I    +NNQV GKTKLS+F
Sbjct: 77  VREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECLPI----SNNQVTGKTKLSEF 136

Query: 62  DDWDKVVSTRD 70
           +DWDKVVST+D
Sbjct: 137 EDWDKVVSTQD 143

[Close]

BLAST of Lsi04G017870 vs. NCBI nr
Match: gi|700200319|gb|KGN55477.1| (hypothetical protein Csa_4G652890 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 2   VRE-EFIAAA--FEASTNLFYNPALRESQKAVREQKNELLRIINLSNNNQVAGKTKLSKF 61
           VRE EFIA    +    NL YNPA RES+KAVREQKNE L I    +NNQV GKTKLS+F
Sbjct: 77  VREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECLPI----SNNQVTGKTKLSEF 136

Query: 62  DDWDKVVSTRD 70
           +DWDKVVST+D
Sbjct: 137 EDWDKVVSTQD 143

The following BLAST results are available for this feature:

BLAST of Lsi04G017870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G017870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4F8_CUCSA	8.0e-13	66.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652890 PE=4 SV=1	[more]

BLAST of Lsi04G017870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G017870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200319\|gb\|KGN55477.1\|	1.1e-12	66.20	hypothetical protein Csa_4G652890 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G017870.1	Lsi04G017870.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G017870	Csa4G652890	Cucumber (Chinese Long) v2	culsiB284
Lsi04G017870	CsGy4G025010	Cucumber (Gy14) v2	cgyblsiB264
Lsi04G017870	CsaV3_4G037040	Cucumber (Chinese Long) v3	cuclsiB305

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G017870	Watermelon (97103) v2	lsiwmbB291
Lsi04G017870	Wax gourd	lsiwgoB403
Lsi04G017870	Bottle gourd (USVL1VR-Ls)	lsilsiB054
Lsi04G017870	Bottle gourd (USVL1VR-Ls)	lsilsiB078
Lsi04G017870	Bottle gourd (USVL1VR-Ls)	lsilsiB143
Lsi04G017870	Cucumber (Gy14) v1	cgylsiB436
Lsi04G017870	Cucumber (Gy14) v1	cgylsiB528
Lsi04G017870	Cucurbita maxima (Rimu)	cmalsiB024
Lsi04G017870	Cucurbita maxima (Rimu)	cmalsiB424
Lsi04G017870	Cucurbita moschata (Rifu)	cmolsiB012
Lsi04G017870	Cucurbita moschata (Rifu)	cmolsiB412
Lsi04G017870	Cucurbita pepo (Zucchini)	cpelsiB462
Lsi04G017870	Cucurbita pepo (Zucchini)	cpelsiB638
Lsi04G017870	Wild cucumber (PI 183967)	cpilsiB284
Lsi04G017870	Melon (DHL92) v3.5.1	lsimeB323
Lsi04G017870	Watermelon (Charleston Gray)	lsiwcgB290
Lsi04G017870	Watermelon (97103) v1	lsiwmB319
Lsi04G017870	Melon (DHL92) v3.6.1	lsimedB339
Lsi04G017870	Silver-seed gourd	carlsiB094
Lsi04G017870	Silver-seed gourd	carlsiB324
Lsi04G017870	Silver-seed gourd	carlsiB588
Lsi04G017870	Cucumber (Chinese Long) v3	cuclsiB480