Lsi04G015550.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G015550.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ulp1 protease family, carboxy-terminal domain protein
Location	chr04 : 23113569 .. 23113981 (+)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATTGAAAATTTGGCAAGTTAAACATGATCTCCAACACCATCGCTCTAATCCAGTTTGGAAACCTGTAAAGGTAAATTTGCATTGATACTTTGACGAATTCTTTTAATTGAAATATATGAGTAATTTATTTTTAGTATTTTTACATGTAGTGCCCTCGCCAATTGGATTCTGTAGGATGCGGATACTATGTCCAAAAGTATATACGCAAAATAGTGCATAATTCTAGTACTCCTATTAGTAATCTCGTACGTAAATTATTTATTTATGATATGATACAGTTTAATAAATGATCTAAGCTTATGTTGTGTTTAACTTTCCTTTTCTTTGTAGTTCAATACAAAAACTGCAAATAGTCAAGAAGAGATTGATGAGGTTCGAACAGAATGGGCAAGCTTTGTTGGACGATTTGTG

mRNA sequence

GGATTGAAAATTTGGCAAGTTAAACATGATCTCCAACACCATCGCTCTAATCCAGTTTGGAAACCTGTAAAGTGCCCTCGCCAATTGGATTCTGTAGGATGCGGATACTATGTCCAAAAGTATATACGCAAAATAGTGCATAATTCTAGTACTCCTATTAGTAATCTCTTCAATACAAAAACTGCAAATAGTCAAGAAGAGATTGATGAGGTTCGAACAGAATGGGCAAGCTTTGTTGGACGATTTGTG

Coding sequence (CDS)

GGATTGAAAATTTGGCAAGTTAAACATGATCTCCAACACCATCGCTCTAATCCAGTTTGGAAACCTGTAAAGTGCCCTCGCCAATTGGATTCTGTAGGATGCGGATACTATGTCCAAAAGTATATACGCAAAATAGTGCATAATTCTAGTACTCCTATTAGTAATCTCTTCAATACAAAAACTGCAAATAGTCAAGAAGAGATTGATGAGGTTCGAACAGAATGGGCAAGCTTTGTTGGACGATTTGTG

Protein sequence

GLKIWQVKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQEEIDEVRTEWASFVGRFV

Homology

[Close]

BLAST of Lsi04G015550.1 vs. TrEMBL
Match: V4UTE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012877mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 7   VKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQE 66
           VK     ++    W  VK PRQ  +V CG+YV  Y++ I+ ++S    + F  KT N +E
Sbjct: 109 VKESASSNKVKVNWATVKAPRQPGNVECGFYVMSYMQDIIADNSVLKEDFFGKKTYN-EE 168

Query: 67  EIDEVRTEWASFV 80
           EIDE+R EWASFV
Sbjct: 169 EIDEIRKEWASFV 180

[Close]

BLAST of Lsi04G015550.1 vs. TrEMBL
Match: M5VL30_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015016mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 615 LKIYNT-HIARARRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 674

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 675 NQEASYPQEAIDEVRNEWAEFVFQII 699

[Close]

BLAST of Lsi04G015550.1 vs. TrEMBL
Match: M5XWE4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023585mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 626 LKIYNT-HIARARRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 685

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 686 NQEASYPQEAIDEVRNEWAEFVFQII 710

[Close]

BLAST of Lsi04G015550.1 vs. TrEMBL
Match: M5X3E2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020062mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 352 LKIYNT-HIARARRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 411

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 412 NQEASYPQEAIDEVRNEWAEFVFQII 436

[Close]

BLAST of Lsi04G015550.1 vs. TrEMBL
Match: M5XRF0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015902mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 626 LKIYNT-HIARAGRKNVIWKTLSGTPKQSSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 685

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 686 NQEASYPQEAIDEVRNEWAEFVFQII 710

[Close]

BLAST of Lsi04G015550.1 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-23
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 2   LKIWQVKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKT 61
           LK WQ +H  +H+RS   WKP+KCPR L S+ CGYYVQKY+R++V N++T I+NLFNT  
Sbjct: 632 LKHWQFEHSPKHYRSRIRWKPIKCPRPLGSIECGYYVQKYLRELVKNANTRINNLFNTIH 691

Query: 62  ANSQEEIDEVRTEWASFVGRFV 84
           A  QEEID VR EWA FV RFV
Sbjct: 692 AYGQEEIDAVRVEWAEFVARFV 713

[Close]

BLAST of Lsi04G015550.1 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 2   LKIWQVKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKT 61
           LK WQ +H  + +RS   WKP+KCPR L S+ CGYYVQKY+R++V NS++ IS+LFNT  
Sbjct: 632 LKHWQFEHSPKQYRSRIRWKPIKCPRPLGSIECGYYVQKYLRELVKNSNSHISDLFNTIH 691

Query: 62  ANSQEEIDEVRTEWASFVGRFV 84
              QEEID VR EWA FVGRFV
Sbjct: 692 TYEQEEIDAVRVEWAEFVGRFV 713

[Close]

BLAST of Lsi04G015550.1 vs. NCBI nr
Match: gi|985458812|ref|XP_015387930.1| (PREDICTED: uncharacterized protein LOC102629700 [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 28/66 (42.42%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 14  HRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQEEIDEVRT 73
           +R + VWK VKCP+Q  +  CGYYV +++++I+ N +  I NLF  + + +Q++ID+VR 
Sbjct: 734 NRKSFVWKRVKCPQQTTNTECGYYVMRFMKEIIENQADSIKNLFVGRDSFTQKDIDKVRV 793

Query: 74  EWASFV 80
           EWA ++
Sbjct: 794 EWAEYI 799

[Close]

BLAST of Lsi04G015550.1 vs. NCBI nr
Match: gi|985468253|ref|XP_015389936.1| (PREDICTED: uncharacterized protein LOC102623899 [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 14  HRSNPVWKPVKCPRQLDSVG-CGYYVQKYIRKIVHNSSTPISNLFNTKTANSQEEIDEVR 73
           +R + +WKP+KCPRQ   V  CGYYV KY+  IV N++  I   F    + +Q EIDEVR
Sbjct: 65  NRKHCIWKPMKCPRQPKYVEHCGYYVMKYMWDIVANTNVSIPEKFVKIQSYTQREIDEVR 124

Query: 74  TEWASFVGRFV 84
            EWA +  + V
Sbjct: 125 CEWARYTWQLV 135

[Close]

BLAST of Lsi04G015550.1 vs. NCBI nr
Match: gi|568855292|ref|XP_006481241.1| (PREDICTED: uncharacterized protein LOC102615334 [Citrus sinensis])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 7   VKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQE 66
           VK  +  ++    W  VK PRQ  +V CG+YV  Y++ I+ ++S    + F  KT N +E
Sbjct: 33  VKESVSSNKVKVNWATVKAPRQPGNVECGFYVMSYMQDIIADNSVLKEDFFGKKTYN-EE 92

Query: 67  EIDEVRTEWASFV 80
           EIDE+R EWASFV
Sbjct: 93  EIDEIRKEWASFV 104

The following BLAST results are available for this feature:

BLAST of Lsi04G015550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G015550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V4UTE3_9ROSI	3.6e-08	43.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012877mg PE=4 SV=1	[more]
M5VL30_PRUPE	3.0e-07	38.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015016mg PE=4 SV=1	[more]
M5XWE4_PRUPE	3.0e-07	38.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023585mg PE=4 SV=1	[more]
M5X3E2_PRUPE	3.0e-07	38.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020062mg PE=4 SV=1	[more]
M5XRF0_PRUPE	3.9e-07	38.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015902mg PE=4 SV=1	[more]

BLAST of Lsi04G015550.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G015550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101935\|ref\|XP_008451868.1\|	7.4e-23	62.20	PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo]	[more]
gi\|778691222\|ref\|XP_011653243.1\|	8.1e-22	60.98	PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus]	[more]
gi\|985458812\|ref\|XP_015387930.1\|	7.1e-10	42.42	PREDICTED: uncharacterized protein LOC102629700 [Citrus sinensis]	[more]
gi\|985468253\|ref\|XP_015389936.1\|	2.3e-08	46.48	PREDICTED: uncharacterized protein LOC102623899 [Citrus sinensis]	[more]
gi\|568855292\|ref\|XP_006481241.1\|	3.0e-08	43.84	PREDICTED: uncharacterized protein LOC102615334 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G015550	Lsi04G015550	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G015550.1.CDS.1	Lsi04G015550.1.CDS.1	CDS
Lsi04G015550.1.CDS.2	Lsi04G015550.1.CDS.2	CDS
Lsi04G015550.1.CDS.3	Lsi04G015550.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G015550.1	Lsi04G015550.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF54001	Cysteine proteinases	coord: 4..77 score: 8.0