Lsi04G015550 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G015550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUlp1 protease family, carboxy-terminal domain protein
Locationchr04 : 23113569 .. 23113981 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTGAAAATTTGGCAAGTTAAACATGATCTCCAACACCATCGCTCTAATCCAGTTTGGAAACCTGTAAAGGTAAATTTGCATTGATACTTTGACGAATTCTTTTAATTGAAATATATGAGTAATTTATTTTTAGTATTTTTACATGTAGTGCCCTCGCCAATTGGATTCTGTAGGATGCGGATACTATGTCCAAAAGTATATACGCAAAATAGTGCATAATTCTAGTACTCCTATTAGTAATCTCGTACGTAAATTATTTATTTATGATATGATACAGTTTAATAAATGATCTAAGCTTATGTTGTGTTTAACTTTCCTTTTCTTTGTAGTTCAATACAAAAACTGCAAATAGTCAAGAAGAGATTGATGAGGTTCGAACAGAATGGGCAAGCTTTGTTGGACGATTTGTG

mRNA sequence

GGATTGAAAATTTGGCAAGTTAAACATGATCTCCAACACCATCGCTCTAATCCAGTTTGGAAACCTGTAAAGTGCCCTCGCCAATTGGATTCTGTAGGATGCGGATACTATGTCCAAAAGTATATACGCAAAATAGTGCATAATTCTAGTACTCCTATTAGTAATCTCTTCAATACAAAAACTGCAAATAGTCAAGAAGAGATTGATGAGGTTCGAACAGAATGGGCAAGCTTTGTTGGACGATTTGTG

Coding sequence (CDS)

GGATTGAAAATTTGGCAAGTTAAACATGATCTCCAACACCATCGCTCTAATCCAGTTTGGAAACCTGTAAAGTGCCCTCGCCAATTGGATTCTGTAGGATGCGGATACTATGTCCAAAAGTATATACGCAAAATAGTGCATAATTCTAGTACTCCTATTAGTAATCTCTTCAATACAAAAACTGCAAATAGTCAAGAAGAGATTGATGAGGTTCGAACAGAATGGGCAAGCTTTGTTGGACGATTTGTG

Protein sequence

GLKIWQVKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQEEIDEVRTEWASFVGRFV
Homology
[Close]
BLAST of Lsi04G015550 vs. TrEMBL
Match: V4UTE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012877mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 7   VKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQE 66
           VK     ++    W  VK PRQ  +V CG+YV  Y++ I+ ++S    + F  KT N +E
Sbjct: 109 VKESASSNKVKVNWATVKAPRQPGNVECGFYVMSYMQDIIADNSVLKEDFFGKKTYN-EE 168

Query: 67  EIDEVRTEWASFV 80
           EIDE+R EWASFV
Sbjct: 169 EIDEIRKEWASFV 180

[Close]
BLAST of Lsi04G015550 vs. TrEMBL
Match: M5VL30_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015016mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 615 LKIYNT-HIARARRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 674

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 675 NQEASYPQEAIDEVRNEWAEFVFQII 699

[Close]
BLAST of Lsi04G015550 vs. TrEMBL
Match: M5XWE4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023585mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 626 LKIYNT-HIARARRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 685

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 686 NQEASYPQEAIDEVRNEWAEFVFQII 710

[Close]
BLAST of Lsi04G015550 vs. TrEMBL
Match: M5X3E2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020062mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 352 LKIYNT-HIARARRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 411

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 412 NQEASYPQEAIDEVRNEWAEFVFQII 436

[Close]
BLAST of Lsi04G015550 vs. TrEMBL
Match: M5XRF0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015902mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-07
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 2   LKIWQVKHDLQHHRSNPVWKPVK-CPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLF--- 61
           LKI+   H  +  R N +WK +   P+Q  +V CGYYV +++R I+ + S    N +   
Sbjct: 626 LKIYNT-HIARAGRKNVIWKTLSGTPKQSSNVECGYYVMRFMRDIIMDPSLGFENKYAKG 685

Query: 62  NTKTANSQEEIDEVRTEWASFVGRFV 84
           N + +  QE IDEVR EWA FV + +
Sbjct: 686 NQEASYPQEAIDEVRNEWAEFVFQII 710

[Close]
BLAST of Lsi04G015550 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-23
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 

Query: 2   LKIWQVKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKT 61
           LK WQ +H  +H+RS   WKP+KCPR L S+ CGYYVQKY+R++V N++T I+NLFNT  
Sbjct: 632 LKHWQFEHSPKHYRSRIRWKPIKCPRPLGSIECGYYVQKYLRELVKNANTRINNLFNTIH 691

Query: 62  ANSQEEIDEVRTEWASFVGRFV 84
           A  QEEID VR EWA FV RFV
Sbjct: 692 AYGQEEIDAVRVEWAEFVARFV 713

[Close]
BLAST of Lsi04G015550 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1 

Query: 2   LKIWQVKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKT 61
           LK WQ +H  + +RS   WKP+KCPR L S+ CGYYVQKY+R++V NS++ IS+LFNT  
Sbjct: 632 LKHWQFEHSPKQYRSRIRWKPIKCPRPLGSIECGYYVQKYLRELVKNSNSHISDLFNTIH 691

Query: 62  ANSQEEIDEVRTEWASFVGRFV 84
              QEEID VR EWA FVGRFV
Sbjct: 692 TYEQEEIDAVRVEWAEFVGRFV 713

[Close]
BLAST of Lsi04G015550 vs. NCBI nr
Match: gi|985458812|ref|XP_015387930.1| (PREDICTED: uncharacterized protein LOC102629700 [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 28/66 (42.42%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 14  HRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQEEIDEVRT 73
           +R + VWK VKCP+Q  +  CGYYV +++++I+ N +  I NLF  + + +Q++ID+VR 
Sbjct: 734 NRKSFVWKRVKCPQQTTNTECGYYVMRFMKEIIENQADSIKNLFVGRDSFTQKDIDKVRV 793

Query: 74  EWASFV 80
           EWA ++
Sbjct: 794 EWAEYI 799

[Close]
BLAST of Lsi04G015550 vs. NCBI nr
Match: gi|985468253|ref|XP_015389936.1| (PREDICTED: uncharacterized protein LOC102623899 [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 14  HRSNPVWKPVKCPRQLDSVG-CGYYVQKYIRKIVHNSSTPISNLFNTKTANSQEEIDEVR 73
           +R + +WKP+KCPRQ   V  CGYYV KY+  IV N++  I   F    + +Q EIDEVR
Sbjct: 65  NRKHCIWKPMKCPRQPKYVEHCGYYVMKYMWDIVANTNVSIPEKFVKIQSYTQREIDEVR 124

Query: 74  TEWASFVGRFV 84
            EWA +  + V
Sbjct: 125 CEWARYTWQLV 135

[Close]
BLAST of Lsi04G015550 vs. NCBI nr
Match: gi|568855292|ref|XP_006481241.1| (PREDICTED: uncharacterized protein LOC102615334 [Citrus sinensis])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 7   VKHDLQHHRSNPVWKPVKCPRQLDSVGCGYYVQKYIRKIVHNSSTPISNLFNTKTANSQE 66
           VK  +  ++    W  VK PRQ  +V CG+YV  Y++ I+ ++S    + F  KT N +E
Sbjct: 33  VKESVSSNKVKVNWATVKAPRQPGNVECGFYVMSYMQDIIADNSVLKEDFFGKKTYN-EE 92

Query: 67  EIDEVRTEWASFV 80
           EIDE+R EWASFV
Sbjct: 93  EIDEIRKEWASFV 104

The following BLAST results are available for this feature:
BLAST of Lsi04G015550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G015550 vs. TrEMBL
Match NameE-valueIdentityDescription
V4UTE3_9ROSI3.6e-0843.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012877mg PE=4 SV=1[more]
M5VL30_PRUPE3.0e-0738.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015016mg PE=4 SV=1[more]
M5XWE4_PRUPE3.0e-0738.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023585mg PE=4 SV=1[more]
M5X3E2_PRUPE3.0e-0738.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020062mg PE=4 SV=1[more]
M5XRF0_PRUPE3.9e-0738.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015902mg PE=4 SV=1[more]
BLAST of Lsi04G015550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G015550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101935|ref|XP_008451868.1|7.4e-2362.20PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo][more]
gi|778691222|ref|XP_011653243.1|8.1e-2260.98PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus][more]
gi|985458812|ref|XP_015387930.1|7.1e-1042.42PREDICTED: uncharacterized protein LOC102629700 [Citrus sinensis][more]
gi|985468253|ref|XP_015389936.1|2.3e-0846.48PREDICTED: uncharacterized protein LOC102623899 [Citrus sinensis][more]
gi|568855292|ref|XP_006481241.1|3.0e-0843.84PREDICTED: uncharacterized protein LOC102615334 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G015550.1Lsi04G015550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF54001Cysteine proteinasescoord: 4..77
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G015550Melon (DHL92) v3.6.1lsimedB315
Lsi04G015550Melon (DHL92) v3.6.1lsimedB330
Lsi04G015550Melon (DHL92) v3.6.1lsimedB349
Lsi04G015550Silver-seed gourdcarlsiB162
Lsi04G015550Silver-seed gourdcarlsiB708
Lsi04G015550Cucumber (Chinese Long) v3cuclsiB129
Lsi04G015550Cucumber (Chinese Long) v3cuclsiB312
Lsi04G015550Cucumber (Chinese Long) v3cuclsiB484
Lsi04G015550Watermelon (97103) v2lsiwmbB257
Lsi04G015550Watermelon (97103) v2lsiwmbB288
Lsi04G015550Watermelon (97103) v2lsiwmbB304
Lsi04G015550Wax gourdlsiwgoB363
Lsi04G015550Wax gourdlsiwgoB394
Lsi04G015550Bottle gourd (USVL1VR-Ls)lsilsiB074
Lsi04G015550Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi04G015550Cucumber (Gy14) v1cgylsiB126
Lsi04G015550Cucumber (Gy14) v1cgylsiB570
Lsi04G015550Cucumber (Gy14) v1cgylsiB635
Lsi04G015550Cucurbita maxima (Rimu)cmalsiB024
Lsi04G015550Cucurbita maxima (Rimu)cmalsiB174
Lsi04G015550Cucurbita maxima (Rimu)cmalsiB424
Lsi04G015550Cucurbita maxima (Rimu)cmalsiB613
Lsi04G015550Cucurbita maxima (Rimu)cmalsiB724
Lsi04G015550Cucurbita maxima (Rimu)cmalsiB803
Lsi04G015550Cucurbita moschata (Rifu)cmolsiB012
Lsi04G015550Cucurbita moschata (Rifu)cmolsiB412
Lsi04G015550Cucurbita moschata (Rifu)cmolsiB601
Lsi04G015550Cucurbita moschata (Rifu)cmolsiB715
Lsi04G015550Cucurbita moschata (Rifu)cmolsiB789
Lsi04G015550Cucurbita pepo (Zucchini)cpelsiB085
Lsi04G015550Cucurbita pepo (Zucchini)cpelsiB406
Lsi04G015550Cucurbita pepo (Zucchini)cpelsiB462
Lsi04G015550Cucurbita pepo (Zucchini)cpelsiB638
Lsi04G015550Wild cucumber (PI 183967)cpilsiB114
Lsi04G015550Wild cucumber (PI 183967)cpilsiB291
Lsi04G015550Wild cucumber (PI 183967)cpilsiB461
Lsi04G015550Cucumber (Chinese Long) v2culsiB117
Lsi04G015550Cucumber (Chinese Long) v2culsiB291
Lsi04G015550Cucumber (Chinese Long) v2culsiB454
Lsi04G015550Melon (DHL92) v3.5.1lsimeB301
Lsi04G015550Melon (DHL92) v3.5.1lsimeB314
Lsi04G015550Melon (DHL92) v3.5.1lsimeB333
Lsi04G015550Watermelon (Charleston Gray)lsiwcgB270
Lsi04G015550Watermelon (Charleston Gray)lsiwcgB287
Lsi04G015550Watermelon (Charleston Gray)lsiwcgB305
Lsi04G015550Watermelon (97103) v1lsiwmB293
Lsi04G015550Watermelon (97103) v1lsiwmB316
Lsi04G015550Watermelon (97103) v1lsiwmB324
Lsi04G015550Cucumber (Gy14) v2cgyblsiB104
Lsi04G015550Cucumber (Gy14) v2cgyblsiB269
Lsi04G015550Cucumber (Gy14) v2cgyblsiB422