Lsi04G014810.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G014810.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal protein S7, chloroplastic
Locationchr04 : 22514551 .. 22514880 (-)
Sequence length330
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGATGAAACAAAAGACAGAAACAAATCCACGAGATGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTCTGTTCCGAATTAGTGGATGCTGTCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

mRNA sequence

ATGAAAAAGATGAAACAAAAGACAGAAACAAATCCACGAGATGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTCTGTTCCGAATTAGTGGATGCTGTCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Coding sequence (CDS)

ATGAAAAAGATGAAACAAAAGACAGAAACAAATCCACGAGATGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTCTGTTCCGAATTAGTGGATGCTGTCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein sequence

MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR
Homology
[Close]
BLAST of Lsi04G014810.1 vs. Swiss-Prot
Match: RR7_CUCSA (30S ribosomal protein S7, chloroplastic OS=Cucumis sativus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-51
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. Swiss-Prot
Match: RR7_LOTJA (30S ribosomal protein S7, chloroplastic OS=Lotus japonicus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. Swiss-Prot
Match: RR7_EUCGG (30S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. Swiss-Prot
Match: RR7_EUOAL (30S ribosomal protein S7, chloroplastic OS=Euonymus alatus GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. Swiss-Prot
Match: RR7_MANES (30S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TrEMBL
Match: A0A0A0L6M3_CUCSA (Ribosomal protein S7 OS=Cucumis sativus GN=Csa_3G128920 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-49
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TrEMBL
Match: W8E233_9ROSI (Ribosomal protein S7 OS=Cucumis hystrix GN=rps7 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-49
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TrEMBL
Match: T1QPE6_EUCER (30S ribosomal protein S7, chloroplastic OS=Eucalyptus erythrocorys GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TrEMBL
Match: T1QLU7_EUCAR (30S ribosomal protein S7, chloroplastic OS=Eucalyptus aromaphloia GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TrEMBL
Match: M1K265_9LILI (Ribosomal protein S7 OS=Heliconia collinsiana GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-51
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           +KK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  LKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-51
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           +KK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  LKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. TAIR10
Match: AT2G07696.1 (AT2G07696.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 7   KTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAS-RKR 66
           +TE +   ++  A+  + P   V    V G+ + VP  +   + + LAIRW+L A+ ++R
Sbjct: 41  RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRR 100

Query: 67  PGRNMAFKFCS--ELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
               ++ + CS  E++DA +  G A RK+E  H +A  NR+FAHFR
Sbjct: 101 ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFR 146

[Close]
BLAST of Lsi04G014810.1 vs. TAIR10
Match: ATMG01270.1 (ATMG01270.1 mitochondrial ribosomal protein S7)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 7   KTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAS-RKR 66
           +TE +   ++  A+  + P   V    V G+ + VP  +   + + LAIRW+L A+ ++R
Sbjct: 41  RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRR 100

Query: 67  PGRNMAFKFCS--ELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
               ++ + CS  E++DA +  G A RK+E  H +A  NR+FAHFR
Sbjct: 101 ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFR 146

[Close]
BLAST of Lsi04G014810.1 vs. NCBI nr
Match: gi|68164849|ref|YP_247645.1| (ribosomal protein S7 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-49
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. NCBI nr
Match: gi|568244694|ref|YP_008963441.1| (ribosomal protein S7 (chloroplast) [Sedum sarmentosum])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. NCBI nr
Match: gi|317046218|ref|YP_004072507.1| (ribosomal protein S7 [Corynocarpus laevigata])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. NCBI nr
Match: gi|108802686|ref|YP_636344.1| (ribosomal protein S7 (chloroplast) [Eucalyptus globulus subsp. globulus])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810.1 vs. NCBI nr
Match: gi|938339596|ref|YP_009171728.1| (ribosomal protein S7 (chloroplast) [Euonymus japonicus])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

The following BLAST results are available for this feature:
BLAST of Lsi04G014810.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR7_CUCSA2.9e-5194.5030S ribosomal protein S7, chloroplastic OS=Cucumis sativus GN=rps7-A PE=3 SV=1[more]
RR7_LOTJA1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Lotus japonicus GN=rps7-A PE=3 SV=1[more]
RR7_EUCGG1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus G... [more]
RR7_EUOAL1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Euonymus alatus GN=rps7 PE=3 SV=1[more]
RR7_MANES1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1[more]
BLAST of Lsi04G014810.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6M3_CUCSA3.2e-4994.50Ribosomal protein S7 OS=Cucumis sativus GN=Csa_3G128920 PE=3 SV=1[more]
W8E233_9ROSI3.2e-4994.50Ribosomal protein S7 OS=Cucumis hystrix GN=rps7 PE=3 SV=1[more]
T1QPE6_EUCER1.6e-4893.5830S ribosomal protein S7, chloroplastic OS=Eucalyptus erythrocorys GN=rps7 PE=3 ... [more]
T1QLU7_EUCAR1.6e-4893.5830S ribosomal protein S7, chloroplastic OS=Eucalyptus aromaphloia GN=rps7 PE=3 S... [more]
M1K265_9LILI1.6e-4893.58Ribosomal protein S7 OS=Heliconia collinsiana GN=rps7 PE=3 SV=1[more]
BLAST of Lsi04G014810.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01240.11.8e-5192.66ATCG01240.1 ribosomal protein S7[more]
ATCG00900.11.8e-5192.66ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
AT2G07696.15.8e-1033.96 Ribosomal protein S7p/S5e family protein[more]
ATMG01270.15.8e-1033.96ATMG01270.1 mitochondrial ribosomal protein S7[more]
BLAST of Lsi04G014810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|68164849|ref|YP_247645.1|4.6e-4994.50ribosomal protein S7 [Cucumis sativus][more]
gi|568244694|ref|YP_008963441.1|2.3e-4893.58ribosomal protein S7 (chloroplast) [Sedum sarmentosum][more]
gi|317046218|ref|YP_004072507.1|2.3e-4893.58ribosomal protein S7 [Corynocarpus laevigata][more]
gi|108802686|ref|YP_636344.1|2.3e-4893.58ribosomal protein S7 (chloroplast) [Eucalyptus globulus subsp. globulus][more]
gi|938339596|ref|YP_009171728.1|2.3e-4893.58ribosomal protein S7 (chloroplast) [Euonymus japonicus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023798Ribosomal_S7_dom
IPR005717Ribosomal_S7_bac/org-type
IPR000235Ribosomal_S5/S7
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0000028 ribosomal small subunit assembly
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi04G014810Lsi04G014810gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G014810.1.CDS.1Lsi04G014810.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi04G014810.1Lsi04G014810.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 1..109
score: 3.0
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 1..109
score: 1.1
IPR005717Ribosomal protein S7, bacterial/organellar-typeTIGRFAMsTIGR01029TIGR01029coord: 1..109
score: 5.1
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 1..109
score: 3.3
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 2..103
score: 2.8
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 2..106
score: 8.63
NoneNo IPR availablePANTHERPTHR11205:SF2230S RIBOSOMAL PROTEIN S7, CHLOROPLASTICcoord: 1..109
score: 1.1