Lsi04G014810 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G014810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal protein S7, chloroplastic
Locationchr04 : 22514551 .. 22514880 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGATGAAACAAAAGACAGAAACAAATCCACGAGATGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTCTGTTCCGAATTAGTGGATGCTGTCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

mRNA sequence

ATGAAAAAGATGAAACAAAAGACAGAAACAAATCCACGAGATGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTCTGTTCCGAATTAGTGGATGCTGTCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Coding sequence (CDS)

ATGAAAAAGATGAAACAAAAGACAGAAACAAATCCACGAGATGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTCTGTTCCGAATTAGTGGATGCTGTCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein sequence

MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR
Homology
[Close]
BLAST of Lsi04G014810 vs. Swiss-Prot
Match: RR7_CUCSA (30S ribosomal protein S7, chloroplastic OS=Cucumis sativus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-51
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. Swiss-Prot
Match: RR7_LOTJA (30S ribosomal protein S7, chloroplastic OS=Lotus japonicus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. Swiss-Prot
Match: RR7_EUCGG (30S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. Swiss-Prot
Match: RR7_EUOAL (30S ribosomal protein S7, chloroplastic OS=Euonymus alatus GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. Swiss-Prot
Match: RR7_MANES (30S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-50
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TrEMBL
Match: A0A0A0L6M3_CUCSA (Ribosomal protein S7 OS=Cucumis sativus GN=Csa_3G128920 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-49
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TrEMBL
Match: W8E233_9ROSI (Ribosomal protein S7 OS=Cucumis hystrix GN=rps7 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-49
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TrEMBL
Match: T1QPE6_EUCER (30S ribosomal protein S7, chloroplastic OS=Eucalyptus erythrocorys GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TrEMBL
Match: T1QLU7_EUCAR (30S ribosomal protein S7, chloroplastic OS=Eucalyptus aromaphloia GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TrEMBL
Match: M1K265_9LILI (Ribosomal protein S7 OS=Heliconia collinsiana GN=rps7 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-51
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           +KK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  LKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-51
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           +KK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  LKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. TAIR10
Match: AT2G07696.1 (AT2G07696.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 7   KTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAS-RKR 66
           +TE +   ++  A+  + P   V    V G+ + VP  +   + + LAIRW+L A+ ++R
Sbjct: 41  RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRR 100

Query: 67  PGRNMAFKFCS--ELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
               ++ + CS  E++DA +  G A RK+E  H +A  NR+FAHFR
Sbjct: 101 ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFR 146

[Close]
BLAST of Lsi04G014810 vs. TAIR10
Match: ATMG01270.1 (ATMG01270.1 mitochondrial ribosomal protein S7)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 7   KTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAS-RKR 66
           +TE +   ++  A+  + P   V    V G+ + VP  +   + + LAIRW+L A+ ++R
Sbjct: 41  RTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRR 100

Query: 67  PGRNMAFKFCS--ELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
               ++ + CS  E++DA +  G A RK+E  H +A  NR+FAHFR
Sbjct: 101 ISYRISLEKCSFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFR 146

[Close]
BLAST of Lsi04G014810 vs. NCBI nr
Match: gi|68164849|ref|YP_247645.1| (ribosomal protein S7 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-49
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFKF SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKFSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. NCBI nr
Match: gi|568244694|ref|YP_008963441.1| (ribosomal protein S7 (chloroplast) [Sedum sarmentosum])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. NCBI nr
Match: gi|317046218|ref|YP_004072507.1| (ribosomal protein S7 [Corynocarpus laevigata])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. NCBI nr
Match: gi|108802686|ref|YP_636344.1| (ribosomal protein S7 (chloroplast) [Eucalyptus globulus subsp. globulus])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of Lsi04G014810 vs. NCBI nr
Match: gi|938339596|ref|YP_009171728.1| (ribosomal protein S7 (chloroplast) [Euonymus japonicus])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MKKMKQKTETNPRDVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 60
           MKK++QKTETNP  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG
Sbjct: 47  MKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLG 106

Query: 61  ASRKRPGRNMAFKFCSELVDAVKGSGDAIRKKEETHRMAEANRAFAHFR 110
           ASRKRPGRNMAFK  SELVDA KGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 107 ASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

The following BLAST results are available for this feature:
BLAST of Lsi04G014810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR7_CUCSA2.9e-5194.5030S ribosomal protein S7, chloroplastic OS=Cucumis sativus GN=rps7-A PE=3 SV=1[more]
RR7_LOTJA1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Lotus japonicus GN=rps7-A PE=3 SV=1[more]
RR7_EUCGG1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus G... [more]
RR7_EUOAL1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Euonymus alatus GN=rps7 PE=3 SV=1[more]
RR7_MANES1.4e-5093.5830S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1[more]
BLAST of Lsi04G014810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6M3_CUCSA3.2e-4994.50Ribosomal protein S7 OS=Cucumis sativus GN=Csa_3G128920 PE=3 SV=1[more]
W8E233_9ROSI3.2e-4994.50Ribosomal protein S7 OS=Cucumis hystrix GN=rps7 PE=3 SV=1[more]
T1QPE6_EUCER1.6e-4893.5830S ribosomal protein S7, chloroplastic OS=Eucalyptus erythrocorys GN=rps7 PE=3 ... [more]
T1QLU7_EUCAR1.6e-4893.5830S ribosomal protein S7, chloroplastic OS=Eucalyptus aromaphloia GN=rps7 PE=3 S... [more]
M1K265_9LILI1.6e-4893.58Ribosomal protein S7 OS=Heliconia collinsiana GN=rps7 PE=3 SV=1[more]
BLAST of Lsi04G014810 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01240.11.8e-5192.66ATCG01240.1 ribosomal protein S7[more]
ATCG00900.11.8e-5192.66ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
AT2G07696.15.8e-1033.96 Ribosomal protein S7p/S5e family protein[more]
ATMG01270.15.8e-1033.96ATMG01270.1 mitochondrial ribosomal protein S7[more]
BLAST of Lsi04G014810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|68164849|ref|YP_247645.1|4.6e-4994.50ribosomal protein S7 [Cucumis sativus][more]
gi|568244694|ref|YP_008963441.1|2.3e-4893.58ribosomal protein S7 (chloroplast) [Sedum sarmentosum][more]
gi|317046218|ref|YP_004072507.1|2.3e-4893.58ribosomal protein S7 [Corynocarpus laevigata][more]
gi|108802686|ref|YP_636344.1|2.3e-4893.58ribosomal protein S7 (chloroplast) [Eucalyptus globulus subsp. globulus][more]
gi|938339596|ref|YP_009171728.1|2.3e-4893.58ribosomal protein S7 (chloroplast) [Euonymus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023798Ribosomal_S7_dom
IPR005717Ribosomal_S7_bac/org-type
IPR000235Ribosomal_S5/S7
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G014810.1Lsi04G014810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 1..109
score: 3.0
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 1..109
score: 1.1
IPR005717Ribosomal protein S7, bacterial/organellar-typeTIGRFAMsTIGR01029TIGR01029coord: 1..109
score: 5.1
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 1..109
score: 3.3
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 2..103
score: 2.8
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 2..106
score: 8.63
NoneNo IPR availablePANTHERPTHR11205:SF2230S RIBOSOMAL PROTEIN S7, CHLOROPLASTICcoord: 1..109
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G014810Bottle gourd (USVL1VR-Ls)lsilsiB076
Lsi04G014810Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi04G014810Cucumber (Gy14) v1cgylsiB128
Lsi04G014810Cucumber (Gy14) v1cgylsiB570
Lsi04G014810Cucumber (Gy14) v1cgylsiB635
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB024
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB174
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB424
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB613
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB674
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB724
Lsi04G014810Cucurbita maxima (Rimu)cmalsiB803
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB012
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB166
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB298
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB412
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB601
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB666
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB715
Lsi04G014810Cucurbita moschata (Rifu)cmolsiB789
Lsi04G014810Cucurbita pepo (Zucchini)cpelsiB085
Lsi04G014810Cucurbita pepo (Zucchini)cpelsiB406
Lsi04G014810Cucurbita pepo (Zucchini)cpelsiB462
Lsi04G014810Cucurbita pepo (Zucchini)cpelsiB638
Lsi04G014810Cucurbita pepo (Zucchini)cpelsiB675
Lsi04G014810Wild cucumber (PI 183967)cpilsiB114
Lsi04G014810Wild cucumber (PI 183967)cpilsiB291
Lsi04G014810Wild cucumber (PI 183967)cpilsiB463
Lsi04G014810Cucumber (Chinese Long) v2culsiB117
Lsi04G014810Cucumber (Chinese Long) v2culsiB291
Lsi04G014810Cucumber (Chinese Long) v2culsiB456
Lsi04G014810Melon (DHL92) v3.5.1lsimeB301
Lsi04G014810Melon (DHL92) v3.5.1lsimeB314
Lsi04G014810Melon (DHL92) v3.5.1lsimeB335
Lsi04G014810Watermelon (Charleston Gray)lsiwcgB273
Lsi04G014810Watermelon (Charleston Gray)lsiwcgB287
Lsi04G014810Watermelon (Charleston Gray)lsiwcgB305
Lsi04G014810Watermelon (97103) v1lsiwmB293
Lsi04G014810Watermelon (97103) v1lsiwmB316
Lsi04G014810Watermelon (97103) v1lsiwmB327
Lsi04G014810Cucumber (Gy14) v2cgyblsiB104
Lsi04G014810Cucumber (Gy14) v2cgyblsiB269
Lsi04G014810Cucumber (Gy14) v2cgyblsiB425
Lsi04G014810Melon (DHL92) v3.6.1lsimedB315
Lsi04G014810Melon (DHL92) v3.6.1lsimedB330
Lsi04G014810Melon (DHL92) v3.6.1lsimedB351
Lsi04G014810Silver-seed gourdcarlsiB002
Lsi04G014810Silver-seed gourdcarlsiB162
Lsi04G014810Silver-seed gourdcarlsiB294
Lsi04G014810Silver-seed gourdcarlsiB365
Lsi04G014810Silver-seed gourdcarlsiB413
Lsi04G014810Silver-seed gourdcarlsiB414
Lsi04G014810Silver-seed gourdcarlsiB708
Lsi04G014810Cucumber (Chinese Long) v3cuclsiB129
Lsi04G014810Cucumber (Chinese Long) v3cuclsiB312
Lsi04G014810Cucumber (Chinese Long) v3cuclsiB486
Lsi04G014810Cucumber (Chinese Long) v3cuclsiB558
Lsi04G014810Watermelon (97103) v2lsiwmbB260
Lsi04G014810Watermelon (97103) v2lsiwmbB277
Lsi04G014810Watermelon (97103) v2lsiwmbB288
Lsi04G014810Watermelon (97103) v2lsiwmbB304
Lsi04G014810Wax gourdlsiwgoB363
Lsi04G014810Wax gourdlsiwgoB371
Lsi04G014810Wax gourdlsiwgoB394