Lsi04G006520.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G006520.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 5959399 .. 5959672 (+)
Sequence length	187

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTGGAATTATTTTTTAATGACAGCAATTTTTGCAGCACCCATTTCATTTTTTGATGTGAAACCATCAAGCCAAATCCTTACCAAGGTTAATACTATCTTATTTTGTGTTCAAAATCATCTCATTTATCAAACATTTGCATTGTCTCAATAATTCTAATTTTAACTCATTCAGCTGTTGAGTATCATCATCCTAATATCCAAGGTTGCATCGCAAATTTTTCCGCTCTTCCTCGCTGTCTTTGCTATCTCTATATGGTATCAGGCAAGAACA

mRNA sequence

TTGCTGGAATTATTTTTTAATGACAGCAATTTTTGCAGCACCCATTTCATTTTTTGATGTGAAACCATCAAGCCAAATCCTTACCAAGCTGTTGAGTATCATCATCCTAATATCCAAGGTTGCATCGCAAATTTTTCCGCTCTTCCTCGCTGTCTTTGCTATCTCTATATGGTATCAGGCAAGAACA

Coding sequence (CDS)

ATGACAGCAATTTTTGCAGCACCCATTTCATTTTTTGATGTGAAACCATCAAGCCAAATCCTTACCAAGCTGTTGAGTATCATCATCCTAATATCCAAGGTTGCATCGCAAATTTTTCCGCTCTTCCTCGCTGTCTTTGCTATCTCTATATGGTATCAGGCAAGAACA

Protein sequence

MTAIFAAPISFFDVKPSSQILTKLLSIIILISKVASQIFPLFLAVFAISIWYQART

Homology

[Close]

BLAST of Lsi04G006520.1 vs. TrEMBL
Match: A0A0A0KS22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590160 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-08
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 54
            +T+IFAAPISFFD KPSSQIL +                         LLSIIIL+SKVA
Sbjct: 961  VTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVA 1020

[Close]

BLAST of Lsi04G006520.1 vs. TrEMBL
Match: A0A067H2T4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000475mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-06
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 1


Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 56
            +T++F APISFFD  PSS+IL +                         LLSIIIL+S+ A
Sbjct: 967  ITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026

[Close]

BLAST of Lsi04G006520.1 vs. NCBI nr
Match: gi|659090570|ref|XP_008446087.1| (PREDICTED: putative ABC transporter C family member 15 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-08
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 54
            +T+IFAAPISFFD KPSSQIL++                         LLSIIIL+SKVA
Sbjct: 961  VTSIFAAPISFFDAKPSSQILSRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVA 1020

[Close]

BLAST of Lsi04G006520.1 vs. NCBI nr
Match: gi|778704735|ref|XP_004135511.2| (PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 54
            +T+IFAAPISFFD KPSSQIL +                         LLSIIIL+SKVA
Sbjct: 961  VTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVA 1020

[Close]

BLAST of Lsi04G006520.1 vs. NCBI nr
Match: gi|297738346|emb|CBI27547.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-06
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 3   AIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVASQ 57
           A+F AP+SFFD  PSSQIL +                         LLSII+L+S+VA Q
Sbjct: 883 AVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSIIVLMSQVAWQ 942

[Close]

BLAST of Lsi04G006520.1 vs. NCBI nr
Match: gi|641863346|gb|KDO82032.1| (hypothetical protein CISIN_1g000475mg [Citrus sinensis])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-06
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 1


Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 56
            +T++F APISFFD  PSS+IL +                         LLSIIIL+S+ A
Sbjct: 967  ITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026

The following BLAST results are available for this feature:

BLAST of Lsi04G006520.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G006520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS22_CUCSA	1.8e-08	55.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590160 PE=4 SV=1	[more]
A0A067H2T4_CITSI	5.0e-06	46.25	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000475mg PE=4 SV=1	[more]

BLAST of Lsi04G006520.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G006520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090570\|ref\|XP_008446087.1\|	2.0e-08	55.13	PREDICTED: putative ABC transporter C family member 15 [Cucumis melo]	[more]
gi\|778704735\|ref\|XP_004135511.2\|	2.6e-08	55.13	PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus]	[more]
gi\|297738346\|emb\|CBI27547.3\|	5.5e-06	46.84	unnamed protein product [Vitis vinifera]	[more]
gi\|641863346\|gb\|KDO82032.1\|	7.2e-06	46.25	hypothetical protein CISIN_1g000475mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G006520	Lsi04G006520	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G006520.1.five_prime_UTR.1	Lsi04G006520.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G006520.1.CDS.1	Lsi04G006520.1.CDS.1	CDS
Lsi04G006520.1.CDS.2	Lsi04G006520.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G006520.1	Lsi04G006520.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24223	FAMILY NOT NAMED	coord: 1..54 score: 1.6
None	No IPR available	PANTHER	PTHR24223:SF222	SUBFAMILY NOT NAMED	coord: 1..54 score: 1.6