Lsi04G006520 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G006520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 5959399 .. 5959672 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCTGGAATTATTTTTTAATGACAGCAATTTTTGCAGCACCCATTTCATTTTTTGATGTGAAACCATCAAGCCAAATCCTTACCAAGGTTAATACTATCTTATTTTGTGTTCAAAATCATCTCATTTATCAAACATTTGCATTGTCTCAATAATTCTAATTTTAACTCATTCAGCTGTTGAGTATCATCATCCTAATATCCAAGGTTGCATCGCAAATTTTTCCGCTCTTCCTCGCTGTCTTTGCTATCTCTATATGGTATCAGGCAAGAACA

mRNA sequence

TTGCTGGAATTATTTTTTAATGACAGCAATTTTTGCAGCACCCATTTCATTTTTTGATGTGAAACCATCAAGCCAAATCCTTACCAAGCTGTTGAGTATCATCATCCTAATATCCAAGGTTGCATCGCAAATTTTTCCGCTCTTCCTCGCTGTCTTTGCTATCTCTATATGGTATCAGGCAAGAACA

Coding sequence (CDS)

ATGACAGCAATTTTTGCAGCACCCATTTCATTTTTTGATGTGAAACCATCAAGCCAAATCCTTACCAAGCTGTTGAGTATCATCATCCTAATATCCAAGGTTGCATCGCAAATTTTTCCGCTCTTCCTCGCTGTCTTTGCTATCTCTATATGGTATCAGGCAAGAACA

Protein sequence

MTAIFAAPISFFDVKPSSQILTKLLSIIILISKVASQIFPLFLAVFAISIWYQART
Homology
[Close]
BLAST of Lsi04G006520 vs. TrEMBL
Match: A0A0A0KS22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590160 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-08
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 54
            +T+IFAAPISFFD KPSSQIL +                         LLSIIIL+SKVA
Sbjct: 961  VTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVA 1020

[Close]
BLAST of Lsi04G006520 vs. TrEMBL
Match: A0A067H2T4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000475mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-06
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 56
            +T++F APISFFD  PSS+IL +                         LLSIIIL+S+ A
Sbjct: 967  ITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026

[Close]
BLAST of Lsi04G006520 vs. NCBI nr
Match: gi|659090570|ref|XP_008446087.1| (PREDICTED: putative ABC transporter C family member 15 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-08
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 54
            +T+IFAAPISFFD KPSSQIL++                         LLSIIIL+SKVA
Sbjct: 961  VTSIFAAPISFFDAKPSSQILSRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVA 1020

[Close]
BLAST of Lsi04G006520 vs. NCBI nr
Match: gi|778704735|ref|XP_004135511.2| (PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 43/78 (55.13%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 54
            +T+IFAAPISFFD KPSSQIL +                         LLSIIIL+SKVA
Sbjct: 961  VTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVA 1020

[Close]
BLAST of Lsi04G006520 vs. NCBI nr
Match: gi|297738346|emb|CBI27547.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-06
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 3   AIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVASQ 57
           A+F AP+SFFD  PSSQIL +                         LLSII+L+S+VA Q
Sbjct: 883 AVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSIIVLMSQVAWQ 942

[Close]
BLAST of Lsi04G006520 vs. NCBI nr
Match: gi|641863346|gb|KDO82032.1| (hypothetical protein CISIN_1g000475mg [Citrus sinensis])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-06
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 1    MTAIFAAPISFFDVKPSSQILTK-------------------------LLSIIILISKVA 56
            +T++F APISFFD  PSS+IL +                         LLSIIIL+S+ A
Sbjct: 967  ITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026

The following BLAST results are available for this feature:
BLAST of Lsi04G006520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G006520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS22_CUCSA1.8e-0855.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G590160 PE=4 SV=1[more]
A0A067H2T4_CITSI5.0e-0646.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000475mg PE=4 SV=1[more]
BLAST of Lsi04G006520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G006520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090570|ref|XP_008446087.1|2.0e-0855.13PREDICTED: putative ABC transporter C family member 15 [Cucumis melo][more]
gi|778704735|ref|XP_004135511.2|2.6e-0855.13PREDICTED: putative ABC transporter C family member 15 [Cucumis sativus][more]
gi|297738346|emb|CBI27547.3|5.5e-0646.84unnamed protein product [Vitis vinifera][more]
gi|641863346|gb|KDO82032.1|7.2e-0646.25hypothetical protein CISIN_1g000475mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G006520.1Lsi04G006520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24223FAMILY NOT NAMEDcoord: 1..54
score: 1.6
NoneNo IPR availablePANTHERPTHR24223:SF222SUBFAMILY NOT NAMEDcoord: 1..54
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G006520Carg14279Silver-seed gourdcarlsiB218
Lsi04G006520Carg21249Silver-seed gourdcarlsiB629
Lsi04G006520CsaV3_5G030540Cucumber (Chinese Long) v3cuclsiB393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G006520Bottle gourd (USVL1VR-Ls)lsilsiB149
Lsi04G006520Cucumber (Gy14) v1cgylsiB076
Lsi04G006520Cucumber (Gy14) v1cgylsiB636
Lsi04G006520Cucurbita maxima (Rimu)cmalsiB172
Lsi04G006520Cucurbita maxima (Rimu)cmalsiB383
Lsi04G006520Cucurbita maxima (Rimu)cmalsiB670
Lsi04G006520Cucurbita maxima (Rimu)cmalsiB726
Lsi04G006520Cucurbita moschata (Rifu)cmolsiB160
Lsi04G006520Cucurbita moschata (Rifu)cmolsiB368
Lsi04G006520Cucurbita moschata (Rifu)cmolsiB661
Lsi04G006520Cucurbita moschata (Rifu)cmolsiB716
Lsi04G006520Cucurbita pepo (Zucchini)cpelsiB030
Lsi04G006520Cucurbita pepo (Zucchini)cpelsiB091
Lsi04G006520Cucurbita pepo (Zucchini)cpelsiB353
Lsi04G006520Cucurbita pepo (Zucchini)cpelsiB672
Lsi04G006520Wild cucumber (PI 183967)cpilsiB116
Lsi04G006520Wild cucumber (PI 183967)cpilsiB372
Lsi04G006520Cucumber (Chinese Long) v2culsiB119
Lsi04G006520Cucumber (Chinese Long) v2culsiB368
Lsi04G006520Melon (DHL92) v3.5.1lsimeB281
Lsi04G006520Melon (DHL92) v3.5.1lsimeB303
Lsi04G006520Watermelon (Charleston Gray)lsiwcgB283
Lsi04G006520Watermelon (Charleston Gray)lsiwcgB308
Lsi04G006520Watermelon (97103) v1lsiwmB296
Lsi04G006520Watermelon (97103) v1lsiwmB312
Lsi04G006520Cucumber (Gy14) v2cgyblsiB105
Lsi04G006520Cucumber (Gy14) v2cgyblsiB337
Lsi04G006520Melon (DHL92) v3.6.1lsimedB297
Lsi04G006520Melon (DHL92) v3.6.1lsimedB317
Lsi04G006520Silver-seed gourdcarlsiB567
Lsi04G006520Cucumber (Chinese Long) v3cuclsiB131
Lsi04G006520Watermelon (97103) v2lsiwmbB284
Lsi04G006520Watermelon (97103) v2lsiwmbB305
Lsi04G006520Wax gourdlsiwgoB367
Lsi04G006520Wax gourdlsiwgoB380