Lsi03G013110.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G013110.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 23912642 .. 23913856 (+)
Sequence length453
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGACAGTGAGTGGTTCGTTCAAATATCAACTGTTATCCACGGGCACCGTCGCGGTTGAGAGGGCGAACTGAACTCCCTCGCACTGTCTCGAAATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGTTCTTCTTTTACTTTGAATTGTGGGAAATCACTTGCTCCTCTTTACTTCGTTAGAATAGAAAGGCGTTTTCTTCTTAGTCAATGTTAGTTAATTATCGATTTTGGTAAAGAGCTATATGTAGTTGGATGGCAGCAAGAAAATTCTAGTGCTAGATTTTAGATGGAATTGTGTTGACAATGGATGATAGATGTAACCACGTAGGCCCAGGATTCACACCAAGATTCGAATTTTGGATTCAACACTTGACGGCCTTGACATTTACTACATTCTTGCGACCTGGCAATCCTTACTTGTTTTGAACTGTTTCTAGGTGTGAAAACTATCCCACATACCAAGAGTACTTTCAACATGCTTGGTTTTTTTCTTCTAATATCCGTGAGTGTCCGGCCAACTTGGTTCTCATTCACATGCTTCCTAGGAATATTTTTAGGAGGTTGCCTAACATAGAATTGCTCTAAGCTAAACACACTTAAATTTGGAGTTCCTATGATTGAGCCACCGAAAAAGAAAGTGCACTTTGTTTGTATACCGTGGATCTGTGGGGCTTGAAGATTTGTTGGACTCAAGCTCAAAAACAACAGATTTAACCTCTTCCTCGGCGAAGGCGGTAGAATGATGCTGATGTAGTTCGAGGCTTTGTTTTTAGCTTTTGGGTGAATTCTGTTTTCCCCTGTTTTTAGTACTCTGTTTTGGTTATTTCAGTTTGGGTTTTAAGTTGTATTTGTAGTTACCGTATAGTAACTTTGTTGGTTGCTATCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACTAATAAGATCTTGA

mRNA sequence

CGGACAGTGAGTGGTTCGTTCAAATATCAACTGTTATCCACGGGCACCGTCGCGGTTGAGAGGGCGAACTGAACTCCCTCGCACTGTCTCGAAATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACTAATAAGATCTTGA

Coding sequence (CDS)

ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACTAATAAGATCTTGA

Protein sequence

MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALARSCLVIPSGWLVFKELAPISLIRS
Homology
[Close]
BLAST of Lsi03G013110.1 vs. TrEMBL
Match: A0A0A0LI66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.1e-38
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 1   MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
           MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR---SCLVIPSGWLV 108
           KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR   S L     W++
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYLFATCSWIL 110

[Close]
BLAST of Lsi03G013110.1 vs. NCBI nr
Match: gi|659130040|ref|XP_008464969.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 1 

Query: 1  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
          MELS++GNGYHRHVLRTRLPTP SVMASASHAVP LKNN SNS+AILPKEPQFLP S   
Sbjct: 1  MELSLVGNGYHRHVLRTRLPTPYSVMASASHAVPSLKNNQSNSVAILPKEPQFLPGSSNS 60

Query: 61 KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR 97
          KLFNG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Sbjct: 61 KLFNGAQKRHSKSYLERQSAIAQVKDCSELAPALAR 96

[Close]
BLAST of Lsi03G013110.1 vs. NCBI nr
Match: gi|700204613|gb|KGN59746.1| (hypothetical protein Csa_3G842680 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 1   MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
           MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   
Sbjct: 1   MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61  KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR---SCLVIPSGWLV 108
           KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR   S L     W++
Sbjct: 61  KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALARFFFSYLFATCSWIL 110

[Close]
BLAST of Lsi03G013110.1 vs. NCBI nr
Match: gi|449446895|ref|XP_004141206.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 1 

Query: 1  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKG 60
          MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   
Sbjct: 1  MELSLVANGYHRHVLRTRLPTPSSVMASASHAVTTIKNNQSNSVAILPKEPQFLPGSSNA 60

Query: 61 KLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR 97
          KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Sbjct: 61 KLINGAQKRHSKSYLERQSAIAQVKDCSELAPALAR 96

The following BLAST results are available for this feature:
BLAST of Lsi03G013110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G013110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI66_CUCSA8.1e-3876.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842680 PE=4 SV=1[more]
BLAST of Lsi03G013110.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G013110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130040|ref|XP_008464969.1|2.1e-3987.50PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
gi|700204613|gb|KGN59746.1|1.2e-3776.36hypothetical protein Csa_3G842680 [Cucumis sativus][more]
gi|449446895|ref|XP_004141206.1|1.5e-3784.38PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi03G013110Lsi03G013110gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G013110.1.five_prime_UTR.1Lsi03G013110.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G013110.1.CDS.1Lsi03G013110.1.CDS.1CDS
Lsi03G013110.1.CDS.2Lsi03G013110.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi03G013110.1Lsi03G013110.1-proteinpolypeptide