Lsi03G012490.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G012490.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 23089376 .. 23089879 (-)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAATGCCAGTGGGGAGTCCGAATGGACTGGAATGGAGGCTGACGTGGAAGGTTGGGGGTGGGGGCAATTAGGTAAATTGAGTTTGCCGTCTGGAAAAGCTGTATAAGTTTAAACGGGGAGATTTCGCTTATTCCTCCACCGAGTTGAAACCCAACGTAGCCGTTACCATTCTCTTCTACAAAGAAAAACAACGAGAAACCACTCTGTAATTTTGCGAATTGGTCTTTTCTTCTACGCCGGATATTTCCTTTTCCTTTCCGACTGACTCGCTGTAGCTTGACTCAGTGAGAACGATTCGTTTCCGACTGAGTTTTTCAAGAATCGCTGTTTTCTTTTTGTTTACTTCTGGCGGCTTGATGGTTCAGCTGATGAATTCCGGGACGGAGAAGATTCCGACGACGAAGAGGCTGAAGAAAGAGGTTGAGGATTCTTTGGAAGACCTACTCGATCAGTTTCACAAGCGATCCAAATCCGACTTCTCTTCCGAGGTGTTCCTCTGA

mRNA sequence

ATGCGAATGCCAGTGGGGAGTCCGAATGGACTGGAATGGAGGCTGACGTGGAAGCTTGACTCAGTGAGAACGATTCGTTTCCGACTGAGTTTTTCAAGAATCGCTGTTTTCTTTTTGTTTACTTCTGGCGGCTTGATGGTTCAGCTGATGAATTCCGGGACGGAGAAGATTCCGACGACGAAGAGGCTGAAGAAAGAGGTTGAGGATTCTTTGGAAGACCTACTCGATCAGTTTCACAAGCGATCCAAATCCGACTTCTCTTCCGAGGTGTTCCTCTGA

Coding sequence (CDS)

ATGCGAATGCCAGTGGGGAGTCCGAATGGACTGGAATGGAGGCTGACGTGGAAGCTTGACTCAGTGAGAACGATTCGTTTCCGACTGAGTTTTTCAAGAATCGCTGTTTTCTTTTTGTTTACTTCTGGCGGCTTGATGGTTCAGCTGATGAATTCCGGGACGGAGAAGATTCCGACGACGAAGAGGCTGAAGAAAGAGGTTGAGGATTCTTTGGAAGACCTACTCGATCAGTTTCACAAGCGATCCAAATCCGACTTCTCTTCCGAGGTGTTCCTCTGA

Protein sequence

MRMPVGSPNGLEWRLTWKLDSVRTIRFRLSFSRIAVFFLFTSGGLMVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSEVFL

Homology

[Close]

BLAST of Lsi03G012490.1 vs. TrEMBL
Match: A0A0A0LCI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710230 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.2e-14
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 46 MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 90
          MVQLMNSGTEKIPT KRLKKEVEDSLEDLLDQFHKRSKSDFSSE
Sbjct: 1  MVQLMNSGTEKIPTAKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 44

[Close]

BLAST of Lsi03G012490.1 vs. NCBI nr
Match: gi|659125981|ref|XP_008462951.1| (PREDICTED: uncharacterized protein LOC103501212 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1


Query: 46 MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 90
          MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE
Sbjct: 1  MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 44

[Close]

BLAST of Lsi03G012490.1 vs. NCBI nr
Match: gi|449439751|ref|XP_004137649.1| (PREDICTED: uncharacterized protein LOC101216149 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1


Query: 46 MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 90
          MVQLMNSGTEKIPT KRLKKEVEDSLEDLLDQFHKRSKSDFSSE
Sbjct: 1  MVQLMNSGTEKIPTAKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 44

The following BLAST results are available for this feature:

BLAST of Lsi03G012490.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G012490.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI0_CUCSA	8.2e-14	97.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710230 PE=4 SV=1	[more]

BLAST of Lsi03G012490.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G012490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125981\|ref\|XP_008462951.1\|	3.1e-14	100.00	PREDICTED: uncharacterized protein LOC103501212 [Cucumis melo]	[more]
gi\|449439751\|ref\|XP_004137649.1\|	1.2e-13	97.73	PREDICTED: uncharacterized protein LOC101216149 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G012490	Lsi03G012490	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G012490.1.CDS.2	Lsi03G012490.1.CDS.2	CDS
Lsi03G012490.1.CDS.1	Lsi03G012490.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G012490.1	Lsi03G012490.1-protein	polypeptide