Lsi03G012490 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G012490
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 23089376 .. 23089879 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAATGCCAGTGGGGAGTCCGAATGGACTGGAATGGAGGCTGACGTGGAAGGTTGGGGGTGGGGGCAATTAGGTAAATTGAGTTTGCCGTCTGGAAAAGCTGTATAAGTTTAAACGGGGAGATTTCGCTTATTCCTCCACCGAGTTGAAACCCAACGTAGCCGTTACCATTCTCTTCTACAAAGAAAAACAACGAGAAACCACTCTGTAATTTTGCGAATTGGTCTTTTCTTCTACGCCGGATATTTCCTTTTCCTTTCCGACTGACTCGCTGTAGCTTGACTCAGTGAGAACGATTCGTTTCCGACTGAGTTTTTCAAGAATCGCTGTTTTCTTTTTGTTTACTTCTGGCGGCTTGATGGTTCAGCTGATGAATTCCGGGACGGAGAAGATTCCGACGACGAAGAGGCTGAAGAAAGAGGTTGAGGATTCTTTGGAAGACCTACTCGATCAGTTTCACAAGCGATCCAAATCCGACTTCTCTTCCGAGGTGTTCCTCTGA

mRNA sequence

ATGCGAATGCCAGTGGGGAGTCCGAATGGACTGGAATGGAGGCTGACGTGGAAGCTTGACTCAGTGAGAACGATTCGTTTCCGACTGAGTTTTTCAAGAATCGCTGTTTTCTTTTTGTTTACTTCTGGCGGCTTGATGGTTCAGCTGATGAATTCCGGGACGGAGAAGATTCCGACGACGAAGAGGCTGAAGAAAGAGGTTGAGGATTCTTTGGAAGACCTACTCGATCAGTTTCACAAGCGATCCAAATCCGACTTCTCTTCCGAGGTGTTCCTCTGA

Coding sequence (CDS)

ATGCGAATGCCAGTGGGGAGTCCGAATGGACTGGAATGGAGGCTGACGTGGAAGCTTGACTCAGTGAGAACGATTCGTTTCCGACTGAGTTTTTCAAGAATCGCTGTTTTCTTTTTGTTTACTTCTGGCGGCTTGATGGTTCAGCTGATGAATTCCGGGACGGAGAAGATTCCGACGACGAAGAGGCTGAAGAAAGAGGTTGAGGATTCTTTGGAAGACCTACTCGATCAGTTTCACAAGCGATCCAAATCCGACTTCTCTTCCGAGGTGTTCCTCTGA

Protein sequence

MRMPVGSPNGLEWRLTWKLDSVRTIRFRLSFSRIAVFFLFTSGGLMVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSEVFL
Homology
[Close]
BLAST of Lsi03G012490 vs. TrEMBL
Match: A0A0A0LCI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710230 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.2e-14
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 

Query: 46 MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 90
          MVQLMNSGTEKIPT KRLKKEVEDSLEDLLDQFHKRSKSDFSSE
Sbjct: 1  MVQLMNSGTEKIPTAKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 44

[Close]
BLAST of Lsi03G012490 vs. NCBI nr
Match: gi|659125981|ref|XP_008462951.1| (PREDICTED: uncharacterized protein LOC103501212 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 

Query: 46 MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 90
          MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE
Sbjct: 1  MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 44

[Close]
BLAST of Lsi03G012490 vs. NCBI nr
Match: gi|449439751|ref|XP_004137649.1| (PREDICTED: uncharacterized protein LOC101216149 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 

Query: 46 MVQLMNSGTEKIPTTKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 90
          MVQLMNSGTEKIPT KRLKKEVEDSLEDLLDQFHKRSKSDFSSE
Sbjct: 1  MVQLMNSGTEKIPTAKRLKKEVEDSLEDLLDQFHKRSKSDFSSE 44

The following BLAST results are available for this feature:
BLAST of Lsi03G012490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G012490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI0_CUCSA8.2e-1497.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710230 PE=4 SV=1[more]
BLAST of Lsi03G012490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G012490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125981|ref|XP_008462951.1|3.1e-14100.00PREDICTED: uncharacterized protein LOC103501212 [Cucumis melo][more]
gi|449439751|ref|XP_004137649.1|1.2e-1397.73PREDICTED: uncharacterized protein LOC101216149 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G012490.1Lsi03G012490.1mRNA