Lsi03G012350.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G012350.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHomeobox associated leucine zipper protein
Locationchr03 : 22919024 .. 22920848 (-)
Sequence length588
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTCACATATAATAAATATGAGTCTTGAAATCCAAGGTAACTAATTTCACTTCCTTGAAAAATTTTAAACTTTGTTTCTTGGCTTCATCCTCTGATGATTGTTTTCTTAAATGTAACGAATAAGGTTCTCAATAATTCTCTACCTAATGAACAATGGTCATAATTCTCTCACTTTTTTTTTCCAAAAAAAGTAATATTCTGGGTTCTCAAGACTGGCACCCGTCTCCATACATCTCTTTTCAATAGAAAAGAGTGCGTATATTTTTTTCTTTTAAAAAAAATTATCATGTTACAATTTATGACTGAACACTTGAATAGTTTGTACAAAGATGGATGCATCCTGGAATACTGCAAAGAATTTGAGGGGTTTTTTTTGTTATATGATTAGAGAGTATTGTTGGAAAAAACCTCACACTTCTACCGCATGAATAAACAAAAAAATAATTGAGAAATTAAAAGAAAGCCGTAAAACTAAAAACATAAGAATTAACGTGGAAAACTCCCAACTCGGAGAAACACATGAACCAGAAAAAAATTCACTATGTAAAAAATTGTTACAATCACATAGAATAAATCTCTCTCCCGATCCCAATTACACCCTAAACCCTAAACCCTACTCACACCATTTTCCACTCTCAAATTAGAGAATACATAAAGAGAATTTGACTTGAAACTAGAGACATAGACTCCTTCTAGGCTTGGAGTTCATTCCTATTATTCAATTTAACTAATGTGGGACAACTACACTTCTACTATTTTGTTAAAAACTCAATAGATATAGTCCAAAATGTATCTCAATATAAAAATAAAAGAAAAAAAAAAGATAAATATACTTTTTCTCTTGTTTCTAATCAAAAGCTTTGGAGTCTATTCAGCTGGTTTCTAAAGCTCTCTTATAAATTTGATTGATCCATTCAGAATAATTTTCTTCTGTGTTTGTGTTGAATGGAGTTGGGTTTGAGATTAGGAAATGATCCTCCATTTGGATTCCCTCAAAAACCTCCTTCTTCATCTTCACACCCAACACCCCTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCACTCCATGAAGATCGCAAACACCACAACCACCTCCTTCCCCATTCTCTTCACTCTCCTCCGCCACCCGACGCCGCCTCTCGCCGATCTTCTCAAACTGGTACTTCACTTCCTACTCCAATGGATCAAAACCCTTTTTTTTTCTCTCTCCTTTTTAATCTTACTGTAAAACTAGTTCATTTCTTGCCCTTCATTTTTTTCCACATAATATCAACTGTATTGATCTTGAATATTATATAACATGTATTTTTAGGTTTAGTTTGAGTTTTTAAGCCTCTGATACCATGATATAAACGAAATAATTCATCCATTGTTTGAGGTATAGAGACATAAGGAAGGTATATATTTAAAAAGCATAATTATGTGATGGGTGACATTGGTTTATGACAAGTAAATAGAAGGATCAGAAGGAGGAGGAGGTGTTTTTACAGAGGTGATAAGCGGAGCAACGGCGGCGGCAGACGGTGGCGGAGGAGGAGGAGAATTGGGAAGAAGATCAAACGGAATAGTTTGGTCGATAAGAAAGAATAGGGAAGAAAGAGAGGGGAAGAGTGAGAATGAAGAAGAAGAAGAAGAAATGAATTTGTGTGGTAGAAAAAAACTGCGGCTTTCAAGACAACAATCGGCGTTTCTTGAAGAAAGCTTCAAACAACATCATACGCTCTACCCTGTAAACTCTCTCTCTCTCTTTCTCTCACATCCTCTCCTTCTTTATTTTTTTTAATATAAATTAGGAGTCAGAAGATTTGAGCTAA

mRNA sequence

ATGACATTGGGTTTGAGATTAGGAAATGATCCTCCATTTGGATTCCCTCAAAAACCTCCTTCTTCATCTTCACACCCAACACCCCTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCACTCCATGAAGATCGCAAACACCACAACCACCTCCTTCCCCATTCTCTTCACTCTCCTCCGCCACCCGACGCCGCCTCTCGCCGATCTTCTCAAACTGGTACTTCACTTCCTACTCCAATGGATCAAAACCCTTTTTTTTTCTCTCTCCTTTTTAATCTTACTAGACATAAGGAAGGATCAGAAGGAGGAGGAGGTGTTTTTACAGAGGTGATAAGCGGAGCAACGGCGGCGGCAGACGGTGGCGGAGGAGGAGGAGAATTGGGAAGAAGATCAAACGGAATAGTTTGGTCGATAAGAAAGAATAGGGAAGAAAGAGAGGGGAAGAGTGAGAATGAAGAAGAAGAAGAAGAAATGAATTTGTGTGGTAGAAAAAAACTGCGGCTTTCAAGACAACAATCGGCGTTTCTTGAAGAAAGCTTCAAACAACATCATACGCTCTACCCTGAGTCAGAAGATTTGAGCTAA

Coding sequence (CDS)

ATGACATTGGGTTTGAGATTAGGAAATGATCCTCCATTTGGATTCCCTCAAAAACCTCCTTCTTCATCTTCACACCCAACACCCCTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCACTCCATGAAGATCGCAAACACCACAACCACCTCCTTCCCCATTCTCTTCACTCTCCTCCGCCACCCGACGCCGCCTCTCGCCGATCTTCTCAAACTGGTACTTCACTTCCTACTCCAATGGATCAAAACCCTTTTTTTTTCTCTCTCCTTTTTAATCTTACTAGACATAAGGAAGGATCAGAAGGAGGAGGAGGTGTTTTTACAGAGGTGATAAGCGGAGCAACGGCGGCGGCAGACGGTGGCGGAGGAGGAGGAGAATTGGGAAGAAGATCAAACGGAATAGTTTGGTCGATAAGAAAGAATAGGGAAGAAAGAGAGGGGAAGAGTGAGAATGAAGAAGAAGAAGAAGAAATGAATTTGTGTGGTAGAAAAAAACTGCGGCTTTCAAGACAACAATCGGCGTTTCTTGAAGAAAGCTTCAAACAACATCATACGCTCTACCCTGAGTCAGAAGATTTGAGCTAA

Protein sequence

MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSILQPLHEDRKHHNHLLPHSLHSPPPPDAASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAAADGGGGGGELGRRSNGIVWSIRKNREEREGKSENEEEEEEMNLCGRKKLRLSRQQSAFLEESFKQHHTLYPESEDLS
Homology
[Close]
BLAST of Lsi03G012350.1 vs. TrEMBL
Match: A0A0A0LEY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G702640 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.8e-34
Identity = 119/204 (58.33%), Postives = 127/204 (62.25%), Query Frame = 1 

Query: 1   MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSI-LQPLHEDRKHHNHLLPHSLHS 60
           M L LRLGNDP         S SSHPTPL FSLSF SI LQ    +  H NHLL HSL+S
Sbjct: 1   MELDLRLGNDP---------SPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNS 60

Query: 61  PPPPDA-ASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAA 120
           PPPP A ASR SS T                         EGS  GGGVFTEVISGA+A 
Sbjct: 61  PPPPSAPASRPSSPT-------------------------EGS--GGGVFTEVISGASA- 120

Query: 121 ADGGGGGGELGRRSNGIVWSIRKNR--EEREGKSENEEEEEE------MNLC--GRKKLR 180
            DGGG  G  GR S GIVWSI KN   EER+GKSENE EEEE      MN+   GRKKLR
Sbjct: 121 -DGGGEIG--GRSSKGIVWSIGKNNREEERKGKSENELEEEEEQEEMDMNMISSGRKKLR 164

Query: 181 LSRQQSAFLEESFKQHHTLYPESE 193
           LSRQQSAFLEESFK+HHTLYP+ +
Sbjct: 181 LSRQQSAFLEESFKEHHTLYPKQK 164

[Close]
BLAST of Lsi03G012350.1 vs. NCBI nr
Match: gi|449463785|ref|XP_004149612.1| (PREDICTED: homeobox-leucine zipper protein HOX27 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 9.8e-34
Identity = 119/204 (58.33%), Postives = 127/204 (62.25%), Query Frame = 1 

Query: 1   MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSI-LQPLHEDRKHHNHLLPHSLHS 60
           M L LRLGNDP         S SSHPTPL FSLSF SI LQ    +  H NHLL HSL+S
Sbjct: 1   MELDLRLGNDP---------SPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNS 60

Query: 61  PPPPDA-ASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAA 120
           PPPP A ASR SS T                         EGS  GGGVFTEVISGA+A 
Sbjct: 61  PPPPSAPASRPSSPT-------------------------EGS--GGGVFTEVISGASA- 120

Query: 121 ADGGGGGGELGRRSNGIVWSIRKNR--EEREGKSENEEEEEE------MNLC--GRKKLR 180
            DGGG  G  GR S GIVWSI KN   EER+GKSENE EEEE      MN+   GRKKLR
Sbjct: 121 -DGGGEIG--GRSSKGIVWSIGKNNREEERKGKSENELEEEEEQEEMDMNMISSGRKKLR 164

Query: 181 LSRQQSAFLEESFKQHHTLYPESE 193
           LSRQQSAFLEESFK+HHTLYP+ +
Sbjct: 181 LSRQQSAFLEESFKEHHTLYPKQK 164

[Close]
BLAST of Lsi03G012350.1 vs. NCBI nr
Match: gi|659123630|ref|XP_008461760.1| (PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 113/202 (55.94%), Postives = 126/202 (62.38%), Query Frame = 1 

Query: 1   MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSI-LQPLHEDRKHHNHLLPHSLHS 60
           M L LRLGNDP         S SSHPTPL FSLSFSS+ LQ    +  H NHLL HSL+S
Sbjct: 1   MELDLRLGNDP---------SPSSHPTPLHFSLSFSSLELQHQARNHIHQNHLLLHSLNS 60

Query: 61  PPPPDAASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAAA 120
           PPPP A++ R S      PT   +                     G VFTEVIS ATA  
Sbjct: 61  PPPPAASASRPSS-----PTERSR---------------------GKVFTEVISEATA-- 120

Query: 121 DGGGGGGELGRRSN-GIVWSIRKNR--EEREGKSENEEEEEE----MNLC--GRKKLRLS 180
               GGGE+GRRS+ GIVWSI KN   EEREGKSENEEEEE+    MN+   GRKKLRLS
Sbjct: 121 ---DGGGEIGRRSSKGIVWSIGKNNSEEEREGKSENEEEEEQEEMDMNMISGGRKKLRLS 162

Query: 181 RQQSAFLEESFKQHHTLYPESE 193
           R+QSAFLEESFKQHHTLYP+ +
Sbjct: 181 RRQSAFLEESFKQHHTLYPKQK 162

The following BLAST results are available for this feature:
BLAST of Lsi03G012350.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G012350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEY4_CUCSA6.8e-3458.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G702640 PE=4 SV=1[more]
BLAST of Lsi03G012350.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G012350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463785|ref|XP_004149612.1|9.8e-3458.33PREDICTED: homeobox-leucine zipper protein HOX27 [Cucumis sativus][more]
gi|659123630|ref|XP_008461760.1|1.3e-3355.94PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi03G012350Lsi03G012350gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G012350.1.CDS.5Lsi03G012350.1.CDS.5CDS
Lsi03G012350.1.CDS.4Lsi03G012350.1.CDS.4CDS
Lsi03G012350.1.CDS.3Lsi03G012350.1.CDS.3CDS
Lsi03G012350.1.CDS.2Lsi03G012350.1.CDS.2CDS
Lsi03G012350.1.CDS.1Lsi03G012350.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi03G012350.1Lsi03G012350.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 60..106
score: 9.1E-13coord: 140..189
score: 9.1
NoneNo IPR availablePANTHERPTHR24326:SF243HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14coord: 140..189
score: 9.1E-13coord: 60..106
score: 9.1