Lsi03G012350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G012350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHomeobox associated leucine zipper protein
Locationchr03 : 22919024 .. 22920848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTCACATATAATAAATATGAGTCTTGAAATCCAAGGTAACTAATTTCACTTCCTTGAAAAATTTTAAACTTTGTTTCTTGGCTTCATCCTCTGATGATTGTTTTCTTAAATGTAACGAATAAGGTTCTCAATAATTCTCTACCTAATGAACAATGGTCATAATTCTCTCACTTTTTTTTTCCAAAAAAAGTAATATTCTGGGTTCTCAAGACTGGCACCCGTCTCCATACATCTCTTTTCAATAGAAAAGAGTGCGTATATTTTTTTCTTTTAAAAAAAATTATCATGTTACAATTTATGACTGAACACTTGAATAGTTTGTACAAAGATGGATGCATCCTGGAATACTGCAAAGAATTTGAGGGGTTTTTTTTGTTATATGATTAGAGAGTATTGTTGGAAAAAACCTCACACTTCTACCGCATGAATAAACAAAAAAATAATTGAGAAATTAAAAGAAAGCCGTAAAACTAAAAACATAAGAATTAACGTGGAAAACTCCCAACTCGGAGAAACACATGAACCAGAAAAAAATTCACTATGTAAAAAATTGTTACAATCACATAGAATAAATCTCTCTCCCGATCCCAATTACACCCTAAACCCTAAACCCTACTCACACCATTTTCCACTCTCAAATTAGAGAATACATAAAGAGAATTTGACTTGAAACTAGAGACATAGACTCCTTCTAGGCTTGGAGTTCATTCCTATTATTCAATTTAACTAATGTGGGACAACTACACTTCTACTATTTTGTTAAAAACTCAATAGATATAGTCCAAAATGTATCTCAATATAAAAATAAAAGAAAAAAAAAAGATAAATATACTTTTTCTCTTGTTTCTAATCAAAAGCTTTGGAGTCTATTCAGCTGGTTTCTAAAGCTCTCTTATAAATTTGATTGATCCATTCAGAATAATTTTCTTCTGTGTTTGTGTTGAATGGAGTTGGGTTTGAGATTAGGAAATGATCCTCCATTTGGATTCCCTCAAAAACCTCCTTCTTCATCTTCACACCCAACACCCCTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCACTCCATGAAGATCGCAAACACCACAACCACCTCCTTCCCCATTCTCTTCACTCTCCTCCGCCACCCGACGCCGCCTCTCGCCGATCTTCTCAAACTGGTACTTCACTTCCTACTCCAATGGATCAAAACCCTTTTTTTTTCTCTCTCCTTTTTAATCTTACTGTAAAACTAGTTCATTTCTTGCCCTTCATTTTTTTCCACATAATATCAACTGTATTGATCTTGAATATTATATAACATGTATTTTTAGGTTTAGTTTGAGTTTTTAAGCCTCTGATACCATGATATAAACGAAATAATTCATCCATTGTTTGAGGTATAGAGACATAAGGAAGGTATATATTTAAAAAGCATAATTATGTGATGGGTGACATTGGTTTATGACAAGTAAATAGAAGGATCAGAAGGAGGAGGAGGTGTTTTTACAGAGGTGATAAGCGGAGCAACGGCGGCGGCAGACGGTGGCGGAGGAGGAGGAGAATTGGGAAGAAGATCAAACGGAATAGTTTGGTCGATAAGAAAGAATAGGGAAGAAAGAGAGGGGAAGAGTGAGAATGAAGAAGAAGAAGAAGAAATGAATTTGTGTGGTAGAAAAAAACTGCGGCTTTCAAGACAACAATCGGCGTTTCTTGAAGAAAGCTTCAAACAACATCATACGCTCTACCCTGTAAACTCTCTCTCTCTCTTTCTCTCACATCCTCTCCTTCTTTATTTTTTTTAATATAAATTAGGAGTCAGAAGATTTGAGCTAA

mRNA sequence

ATGACATTGGGTTTGAGATTAGGAAATGATCCTCCATTTGGATTCCCTCAAAAACCTCCTTCTTCATCTTCACACCCAACACCCCTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCACTCCATGAAGATCGCAAACACCACAACCACCTCCTTCCCCATTCTCTTCACTCTCCTCCGCCACCCGACGCCGCCTCTCGCCGATCTTCTCAAACTGGTACTTCACTTCCTACTCCAATGGATCAAAACCCTTTTTTTTTCTCTCTCCTTTTTAATCTTACTAGACATAAGGAAGGATCAGAAGGAGGAGGAGGTGTTTTTACAGAGGTGATAAGCGGAGCAACGGCGGCGGCAGACGGTGGCGGAGGAGGAGGAGAATTGGGAAGAAGATCAAACGGAATAGTTTGGTCGATAAGAAAGAATAGGGAAGAAAGAGAGGGGAAGAGTGAGAATGAAGAAGAAGAAGAAGAAATGAATTTGTGTGGTAGAAAAAAACTGCGGCTTTCAAGACAACAATCGGCGTTTCTTGAAGAAAGCTTCAAACAACATCATACGCTCTACCCTGAGTCAGAAGATTTGAGCTAA

Coding sequence (CDS)

ATGACATTGGGTTTGAGATTAGGAAATGATCCTCCATTTGGATTCCCTCAAAAACCTCCTTCTTCATCTTCACACCCAACACCCCTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCACTCCATGAAGATCGCAAACACCACAACCACCTCCTTCCCCATTCTCTTCACTCTCCTCCGCCACCCGACGCCGCCTCTCGCCGATCTTCTCAAACTGGTACTTCACTTCCTACTCCAATGGATCAAAACCCTTTTTTTTTCTCTCTCCTTTTTAATCTTACTAGACATAAGGAAGGATCAGAAGGAGGAGGAGGTGTTTTTACAGAGGTGATAAGCGGAGCAACGGCGGCGGCAGACGGTGGCGGAGGAGGAGGAGAATTGGGAAGAAGATCAAACGGAATAGTTTGGTCGATAAGAAAGAATAGGGAAGAAAGAGAGGGGAAGAGTGAGAATGAAGAAGAAGAAGAAGAAATGAATTTGTGTGGTAGAAAAAAACTGCGGCTTTCAAGACAACAATCGGCGTTTCTTGAAGAAAGCTTCAAACAACATCATACGCTCTACCCTGAGTCAGAAGATTTGAGCTAA

Protein sequence

MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSILQPLHEDRKHHNHLLPHSLHSPPPPDAASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAAADGGGGGGELGRRSNGIVWSIRKNREEREGKSENEEEEEEMNLCGRKKLRLSRQQSAFLEESFKQHHTLYPESEDLS
Homology
[Close]
BLAST of Lsi03G012350 vs. TrEMBL
Match: A0A0A0LEY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G702640 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.8e-34
Identity = 119/204 (58.33%), Postives = 127/204 (62.25%), Query Frame = 1 

Query: 1   MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSI-LQPLHEDRKHHNHLLPHSLHS 60
           M L LRLGNDP         S SSHPTPL FSLSF SI LQ    +  H NHLL HSL+S
Sbjct: 1   MELDLRLGNDP---------SPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNS 60

Query: 61  PPPPDA-ASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAA 120
           PPPP A ASR SS T                         EGS  GGGVFTEVISGA+A 
Sbjct: 61  PPPPSAPASRPSSPT-------------------------EGS--GGGVFTEVISGASA- 120

Query: 121 ADGGGGGGELGRRSNGIVWSIRKNR--EEREGKSENEEEEEE------MNLC--GRKKLR 180
            DGGG  G  GR S GIVWSI KN   EER+GKSENE EEEE      MN+   GRKKLR
Sbjct: 121 -DGGGEIG--GRSSKGIVWSIGKNNREEERKGKSENELEEEEEQEEMDMNMISSGRKKLR 164

Query: 181 LSRQQSAFLEESFKQHHTLYPESE 193
           LSRQQSAFLEESFK+HHTLYP+ +
Sbjct: 181 LSRQQSAFLEESFKEHHTLYPKQK 164

[Close]
BLAST of Lsi03G012350 vs. NCBI nr
Match: gi|449463785|ref|XP_004149612.1| (PREDICTED: homeobox-leucine zipper protein HOX27 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 9.8e-34
Identity = 119/204 (58.33%), Postives = 127/204 (62.25%), Query Frame = 1 

Query: 1   MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSI-LQPLHEDRKHHNHLLPHSLHS 60
           M L LRLGNDP         S SSHPTPL FSLSF SI LQ    +  H NHLL HSL+S
Sbjct: 1   MELDLRLGNDP---------SPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNS 60

Query: 61  PPPPDA-ASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAA 120
           PPPP A ASR SS T                         EGS  GGGVFTEVISGA+A 
Sbjct: 61  PPPPSAPASRPSSPT-------------------------EGS--GGGVFTEVISGASA- 120

Query: 121 ADGGGGGGELGRRSNGIVWSIRKNR--EEREGKSENEEEEEE------MNLC--GRKKLR 180
            DGGG  G  GR S GIVWSI KN   EER+GKSENE EEEE      MN+   GRKKLR
Sbjct: 121 -DGGGEIG--GRSSKGIVWSIGKNNREEERKGKSENELEEEEEQEEMDMNMISSGRKKLR 164

Query: 181 LSRQQSAFLEESFKQHHTLYPESE 193
           LSRQQSAFLEESFK+HHTLYP+ +
Sbjct: 181 LSRQQSAFLEESFKEHHTLYPKQK 164

[Close]
BLAST of Lsi03G012350 vs. NCBI nr
Match: gi|659123630|ref|XP_008461760.1| (PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 113/202 (55.94%), Postives = 126/202 (62.38%), Query Frame = 1 

Query: 1   MTLGLRLGNDPPFGFPQKPPSSSSHPTPLDFSLSFSSI-LQPLHEDRKHHNHLLPHSLHS 60
           M L LRLGNDP         S SSHPTPL FSLSFSS+ LQ    +  H NHLL HSL+S
Sbjct: 1   MELDLRLGNDP---------SPSSHPTPLHFSLSFSSLELQHQARNHIHQNHLLLHSLNS 60

Query: 61  PPPPDAASRRSSQTGTSLPTPMDQNPFFFSLLFNLTRHKEGSEGGGGVFTEVISGATAAA 120
           PPPP A++ R S      PT   +                     G VFTEVIS ATA  
Sbjct: 61  PPPPAASASRPSS-----PTERSR---------------------GKVFTEVISEATA-- 120

Query: 121 DGGGGGGELGRRSN-GIVWSIRKNR--EEREGKSENEEEEEE----MNLC--GRKKLRLS 180
               GGGE+GRRS+ GIVWSI KN   EEREGKSENEEEEE+    MN+   GRKKLRLS
Sbjct: 121 ---DGGGEIGRRSSKGIVWSIGKNNSEEEREGKSENEEEEEQEEMDMNMISGGRKKLRLS 162

Query: 181 RQQSAFLEESFKQHHTLYPESE 193
           R+QSAFLEESFKQHHTLYP+ +
Sbjct: 181 RRQSAFLEESFKQHHTLYPKQK 162

The following BLAST results are available for this feature:
BLAST of Lsi03G012350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G012350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEY4_CUCSA6.8e-3458.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G702640 PE=4 SV=1[more]
BLAST of Lsi03G012350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G012350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463785|ref|XP_004149612.1|9.8e-3458.33PREDICTED: homeobox-leucine zipper protein HOX27 [Cucumis sativus][more]
gi|659123630|ref|XP_008461760.1|1.3e-3355.94PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G012350.1Lsi03G012350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 60..106
score: 9.1E-13coord: 140..189
score: 9.1
NoneNo IPR availablePANTHERPTHR24326:SF243HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14coord: 140..189
score: 9.1E-13coord: 60..106
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G012350MELO3C023937.2Melon (DHL92) v3.6.1lsimedB273
Lsi03G012350Cla97C10G195530Watermelon (97103) v2lsiwmbB218
Lsi03G012350Bhi11G001218Wax gourdlsiwgoB292
Lsi03G012350CsaV3_3G032480Cucumber (Chinese Long) v3cuclsiB200
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G012350Cucumber (Gy14) v1cgylsiB297
Lsi03G012350Cucurbita maxima (Rimu)cmalsiB240
Lsi03G012350Cucurbita maxima (Rimu)cmalsiB351
Lsi03G012350Cucurbita maxima (Rimu)cmalsiB422
Lsi03G012350Cucurbita maxima (Rimu)cmalsiB831
Lsi03G012350Cucurbita moschata (Rifu)cmolsiB228
Lsi03G012350Cucurbita moschata (Rifu)cmolsiB340
Lsi03G012350Cucurbita moschata (Rifu)cmolsiB409
Lsi03G012350Cucurbita moschata (Rifu)cmolsiB817
Lsi03G012350Cucurbita pepo (Zucchini)cpelsiB116
Lsi03G012350Cucurbita pepo (Zucchini)cpelsiB266
Lsi03G012350Cucurbita pepo (Zucchini)cpelsiB452
Lsi03G012350Cucurbita pepo (Zucchini)cpelsiB500
Lsi03G012350Wild cucumber (PI 183967)cpilsiB181
Lsi03G012350Cucumber (Chinese Long) v2culsiB183
Lsi03G012350Melon (DHL92) v3.5.1lsimeB260
Lsi03G012350Watermelon (Charleston Gray)lsiwcgB219
Lsi03G012350Watermelon (97103) v1lsiwmB240
Lsi03G012350Cucumber (Gy14) v2cgyblsiB168
Lsi03G012350Cucumber (Gy14) v2cgyblsiB483
Lsi03G012350Silver-seed gourdcarlsiB322
Lsi03G012350Silver-seed gourdcarlsiB410
Lsi03G012350Silver-seed gourdcarlsiB699
Lsi03G012350Silver-seed gourdcarlsiB748